IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
210	 52.70	0	245840..246655	-	271	152968792	metQ	KPN_00211	-	DL-methionine transporter substrate-binding subunit
211	 57.03	0	246699..247352	-	217	152968793	metI	KPN_00212	-	DL-methionine transporter permease subunit
212	 56.10	0	247345..248376	-	343	152968794	metN	KPN_00213	-	DL-methionine transporter ATP-binding subunit
213	 53.07	0	248514..249131	+	205	152968795	gmhB	KPN_00214	-	D,D-heptose 1,7-bisphosphate phosphatase
214	 55.47	0	254892..255695	+	267	152968796	dkgB	KPN_00221	-	2,5-diketo-D-gluconate reductase B
215	 58.83	0	255741..256646	-	301	152968797	yafC	KPN_00222	-	LysR family transcriptional regulator
216	 60.20	0	256751..257941	+	396	152968798	-	KPN_00223	-	putative drug efflux protein
217	 58.56	0	258065..258841	+	258	152968799	yafD	KPN_00224	-	hypothetical protein
218	 58.63	0	258933..259703	+	256	152968800	yafE	KPN_00225	-	putative biotin synthesis protein
219	 55.70	0	259761..261128	-	455	152968801	mltD	KPN_00226	-	membrane-bound lytic murein transglycosylase D
220	 43.92	-2	261200..261955	-	251	152968802	gloB	KPN_00227	-	hydroxyacylglutathione hydrolase
221	 57.25	0	262042..262710	+	222	152968803	yafS	KPN_00228	-	putative methyltransferase
222	 56.62	0	262707..263174	-	155	152968804	rnhA	KPN_00229	-	ribonuclease H
223	 54.51	0	263239..263970	+	243	152968805	dnaQ	KPN_00230	-	DNA polymerase III subunit epsilon
224	 58.84	0	264240..265121	-	293	152968806	-	KPN_00232	-	LysR family transcriptional regulator
225	 56.01	0	265225..265815	+	196	152968807	-	KPN_00233	-	neutral amino-acid efflux protein
226	 58.14	0	265846..266631	-	261	152968808	yafV	KPN_00234	-	hypothetical protein
227	 59.47	0	266795..269239	-	814	152968809	fadE	KPN_00235	-	acyl-CoA dehydrogenase
228	 55.33	0	269479..270060	+	193	152968810	lpcA	KPN_00236	-	phosphoheptose isomerase
229	 57.29	0	270135..270902	+	255	152968811	yafJ	KPN_00237	-	putative amidotransferase
230	 54.12	0	270873..271613	-	246	152968812	yafK	KPN_00238	-	hypothetical protein
231	 61.38	0	272025..273368	+	447	152968813	-	KPN_00239	-	Na(+)-translocating NADH-quinone reductase subunit A
232	 60.21	0	273372..274610	+	412	152968814	-	KPN_00240	-	Na(+)-translocating NADH-quinone reductase subunit B
233	 59.42	0	274603..275016	+	137	152968815	-	KPN_00241	-	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC
234	 58.69	0	275388..276026	+	212	152968816	-	KPN_00242	-	Na(+)-translocating NADH-quinone reductase subunit D
235	 57.62	0	276033..276629	+	198	152968817	-	KPN_00243	-	Na(+)-translocating NADH-quinone reductase subunit E
236	 55.96	0	276642..277865	+	407	152968818	-	KPN_00244	-	Na(+)-translocating NADH-quinone reductase subunit F
237	 59.72	0	277868..278083	+	71	152968819	-	KPN_00245	-	hypothetical protein
238	 59.00	0	278306..279166	-	286	152968820	-	KPN_00246	-	hypothetical protein
239	 57.85	0	279293..280381	+	362	152968821	dinB	KPN_00247	-	DNA polymerase IV
240	 60.71	0	280384..280836	+	150	152968822	yafP	KPN_00248	-	hypothetical protein
241	 58.52	0	280879..282228	-	449	152968823	pepD	KPN_00249	-	aminoacyl-histidine dipeptidase (peptidase D)
242	 56.43	0	282594..283052	+	152	152968824	gpt	KPN_00250	-	xanthine-guanine phosphoribosyltransferase
243	 58.80	0	283158..284402	+	414	152968825	yafA	KPN_00251	-	fermentation/respiration switch protein
244	 53.88	0	284460..284858	+	132	152968826	crl	KPN_00252	-	DNA-binding transcriptional regulator Crl
245	 62.77	0	284944..285636	-	230	152968827	ygaE	KPN_00253	-	DNA-binding transcriptional regulator CsiR
246	 58.12	0	285682..287085	-	467	152968828	gabP	KPN_00254	-	gamma-aminobutyrate transporter
247	 63.63	0	287232..288515	-	427	152968829	gabT	KPN_00255	-	4-aminobutyrate aminotransferase
248	 62.87	0	288528..289976	-	482	152968830	gabD	KPN_00256	-	succinate-semialdehyde dehydrogenase I
249	 62.49	0	290002..291270	-	422	152968831	ygaF	KPN_00257	-	hypothetical protein
250	 58.51	0	291298..292314	-	338	152968832	csiD	KPN_00258	-	hypothetical protein
251	 55.04	0	292737..292994	+	85	152968833	xdhC	KPN_00259	-	hypothetical protein
252	 63.20	0	293052..293801	+	249	152968834	-	KPN_00260	-	KpLE2 phage-like element; putative methyltransferase
253	 51.61	-1	294073..294537	+	154	152968835	-	KPN_00261	-	hypothetical protein
254	 53.33	0	294732..295466	-	244	152968836	stbE	KPN_00262	-	putative fimbriae; chaparone
255	 52.96	0	295432..296766	-	444	152968837	stbD	KPN_00263	-	putative fimbriae; usher
256	 55.83	0	296771..299326	-	851	152968838	stbC	KPN_00264	-	putative fimbriae; usher
257	 51.52	-1	299310..300068	-	252	152968839	stbB	KPN_00265	-	putative fimbriae; chaparone
258	 49.35	-1	300128..300664	-	178	152968840	stbA	KPN_00266	-	putative fimbriae; major subunit
259	 38.99	-2	300984..301142	-	52	152968841	-	KPN_00267	-	hypothetical protein
260	 47.88	-1	302470..303981	+	503	152968842	-	KPN_00268	-	diguanylate cyclase/phosphodiesterase domain-containing protein
261	 41.55	-2	305359..305979	+	206	152968843	-	KPN_00269	-	putative outer membrane protein
262	 48.46	-1	306218..306574	+	118	152968844	-	KPN_00270	-	hypothetical protein
263	 39.03	-2	306831..307304	-	157	152968845	-	KPN_00271	-	hypothetical protein
264	 40.12	-2	307297..308121	-	274	152968846	-	KPN_00272	-	putative sensory transducer
265	 55.25	0	308354..309334	-	326	152968847	-	KPN_00273	-	hypothetical protein
266	 45.71	-2	309928..310323	+	131	152968848	-	KPN_00274	-	hypothetical protein
267	 52.41	0	311624..312142	+	172	152968849	-	KPN_00275	-	fimbrial subunit
268	 43.92	-2	312191..312889	+	232	152968850	-	KPN_00276	-	putative fimbrial chaparone
269	 52.98	0	312969..315452	+	827	152968851	-	KPN_00277	-	putativie fimbrial usher
270	 49.87	-1	315503..316657	+	384	152968852	-	KPN_00278	-	hypothetical protein
271	 62.52	0	317320..318573	-	417	152968853	proA	KPN_00280	-	gamma-glutamyl phosphate reductase
272	 63.13	0	318584..319687	-	367	152968854	proB	KPN_00281	-	gamma-glutamyl kinase
273	 54.91	0	320001..321029	+	342	152968855	phoE	KPN_00282	-	outer membrane phosphoporin protein E
274	 59.52	0	321074..321535	-	153	152968856	nlpC	KPN_00283	-	lipoprotein
275	 66.67	+1	324274..324444	-	56	152968857	yeiE	KPN_00284	-	putative transcriptional regulator (LysR familiy)
276	 67.20	+1	324595..324780	-	61	152968858	yhhM	KPN_00285	-	putative receptor
277	 64.18	+1	324994..325878	-	294	152968859	phnE	KPN_00286	-	membrane channel protein component of Pn transporter
278	 61.63	0	325875..326747	-	290	152968860	-	KPN_00287	-	hypothetical protein
279	 60.53	0	327775..328638	-	287	152968861	phnC	KPN_00288	-	ATP-binding component of phosphonate transport
280	 55.30	0	328747..328878	+	43	152968862	yfeU	KPN_00289	-	hypothetical protein
281	 41.07	-2	329466..330008	+	180	152968863	ykgK	KPN_00290	-	putative regulator
282	 57.99	0	330083..330670	+	195	152968864	yagZ	KPN_00291	-	hypothetical protein
283	 59.79	0	330729..331397	+	222	152968865	yagY	KPN_00292	-	hypothetical protein
284	 62.22	0	331474..333948	+	824	152968866	yagX	KPN_00293	-	putative enzyme
285	 57.79	0	333938..335581	+	547	152968867	yagW	KPN_00294	-	putative receptor
286	 61.74	0	335550..336260	+	236	152968868	yagV	KPN_00295	-	hypothetical protein
287	 66.52	+1	336264..336953	-	229	152968869	yhdY	KPN_00296	-	amino acid ABC transporter membrane protein
288	 65.46	+1	336943..337686	-	247	152968870	gltJ	KPN_00297	-	glutamate/aspartate ABC transporter membrane protein
289	 63.98	+1	337692..338510	-	272	152968871	gltL	KPN_00298	-	ATP-binding protein of glutamate/aspartate transport system
290	 60.62	0	338512..339321	-	269	152968872	fliY	KPN_00299	-	cysteine ABC transporter periplasmic substrate binding protein
291	 57.89	0	339656..339826	+	56	152968873	umuC	KPN_00300	-	DNA polymerase IV
292	 61.64	0	339943..340638	-	231	152968874	livF	KPN_00301	-	ATP-binding component of leucine transport
293	 60.79	0	340631..341413	-	260	152968875	livG	KPN_00302	-	ATP-binding component of high-affinity branched-chain amino acid transport system
294	 61.05	0	341400..342449	-	349	152968876	livM	KPN_00303	-	high-affinity branched-chain amino acid transport
295	 59.44	0	342449..343348	-	299	152968877	livH	KPN_00304	-	high-affinity branched-chain amino acid ABC transporter membrane protein
296	 58.90	0	343368..344474	-	368	152968878	livJ	KPN_00305	-	high-affinity branched-chain amino acid ABC transporter periplasmic substrate-binding protein
297	 65.64	+1	345049..345825	-	258	152968879	eutC	KPN_00306	-	ethanolamine ammonia-lyase small subunit
298	 62.99	0	345822..347210	-	462	152968880	eutB	KPN_00307	-	ethanolamine ammonia-lyase, heavy chain
299	 64.42	+1	347220..348599	-	459	152968881	yhfM	KPN_00308	-	putative amino acid/amine transport protein
300	 61.13	0	348873..350282	+	469	152968882	mmuP	KPN_00309	-	S-methylmethionine transporter
301	 67.52	+1	350269..351201	+	310	152968883	mmuM	KPN_00310	-	homocysteine methyltransferase
302	 61.27	0	351442..352404	+	320	152968884	tauA	KPN_00311	-	taurine ABC transporter periplasmic substrate-binding protein
303	 61.98	0	352416..353183	+	255	152968885	tauB	KPN_00312	-	taurine transporter ATP-binding subunit
304	 64.98	+1	353180..354007	+	275	152968886	tauC	KPN_00313	-	taurine transporter subunit
305	 60.33	0	354004..354855	+	283	152968887	tauD	KPN_00314	-	taurine dioxygenase
306	 61.37	0	355011..356729	-	572	152968888	yhjT	KPN_00315	-	hypothetical protein
307	 59.08	0	356933..357907	-	324	152968889	hemB	KPN_00316	-	delta-aminolevulinic acid dehydratase
308	 61.76	0	358014..359174	-	386	152968890	ampH	KPN_00317	-	beta-lactamase/D-alanine carboxypeptidase
309	 59.55	0	359373..359906	+	177	152968891	-	KPN_00318	-	isochorismatase family protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.