IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2241	 41.87	-2	2492703..2492948	-	81	152970823	-	KPN_02276	-	hypothetical protein
2242	 53.40	0	2493386..2494018	+	210	152970824	-	KPN_02277	-	putative nucleoprotein/polynucleotide-associated enzyme
2243	 63.89	+1	2494044..2494835	-	263	152970825	-	KPN_02278	-	putative ribosomal large subunit pseudouridine synthase A
2244	 49.48	-1	2494933..2495415	+	160	152970826	-	KPN_02279	-	cold shock protein E
2245	 61.56	0	2495525..2496424	+	299	152970827	-	KPN_02280	-	LysR family transcriptional regulator
2246	 65.80	+1	2496399..2497208	-	269	152970828	-	KPN_02281	-	molybdate ABC transporter periplasmic substrate-binding protein
2247	 60.06	0	2497220..2498611	-	463	152970829	-	KPN_02282	-	major facilitator superfamily permease
2248	 64.51	+1	2498819..2499745	-	308	152970830	-	KPN_02283	-	transcriptional regulator LysR
2249	 59.12	0	2499844..2500320	+	158	152970831	-	KPN_02284	-	putative acetyltransferase
2250	 61.78	0	2500370..2501986	-	538	152970832	pckA	KPN_02285	-	phosphoenolpyruvate carboxykinase
2251	 52.35	0	2502297..2503190	+	297	152970833	yjiE	KPN_02286	-	LysR family transcriptional regulator
2252	 64.03	+1	2503196..2503915	-	239	152970834	livF	KPN_02287	-	ATP-binding component of leucine transport
2253	 61.53	0	2503912..2504787	-	291	152970835	livG	KPN_02288	-	ATP-binding component of high-affinity branched-chain amino acid transport system
2254	 62.39	0	2504784..2506070	-	428	152970836	livM	KPN_02289	-	high-affinity branched-chain amino acid transport
2255	 62.15	0	2506080..2507054	-	324	152970837	livH	KPN_02290	-	high-affinity branched-chain amino acid ABC transporter membrane protein
2256	 62.16	0	2507104..2508168	-	354	152970838	livJ	KPN_02291	-	high-affinity branched-chain amino acid ABC transporter periplasmic substrate-binding protein
2257	 62.10	0	2508650..2510950	-	766	152970839	tdcE	KPN_02292	-	formate acetyltransferase 3
2258	 65.59	+1	2510973..2512181	-	402	152970840	tdcD	KPN_02293	-	propionate/acetate kinase
2259	 56.91	0	2512209..2513540	-	443	152970841	tdcC	KPN_02294	-	threonine/serine transporter TdcC
2260	 53.64	0	2513566..2514555	-	329	152970842	tdcB	KPN_02295	-	threonine dehydratase
2261	 55.41	0	2514649..2515590	-	313	152970843	tdcA	KPN_02296	-	DNA-binding transcriptional activator TdcA
2262	 61.79	0	2516208..2516330	+	40	152970844	-	KPN_02297	-	putative nitrilotriacetate monooxygenase
2263	 62.82	0	2517161..2518174	-	337	152970845	-	KPN_02298	-	putative fatty acid desaturase
2264	 59.27	0	2518586..2519329	-	247	152970846	-	KPN_02299	-	hypothetical protein
2265	 62.25	0	2519346..2520161	-	271	152970847	-	KPN_02300	-	hypothetical protein
2266	 60.54	0	2520158..2521087	-	309	152970848	-	KPN_02301	-	hypothetical protein
2267	 60.69	0	2521081..2522520	-	479	152970849	-	KPN_02302	-	hypothetical protein
2268	 62.31	0	2522905..2524650	+	581	152970850	treA	KPN_02303	-	trehalase
2269	 62.80	0	2524904..2527024	+	706	152970851	-	KPN_02304	-	putative ferrioxamine receptor
2270	 61.31	0	2527066..2527569	-	167	152970852	mltE	KPN_02305	-	lytic murein endotransglycosylase E, membrane-bound
2271	 65.57	+1	2527853..2528767	+	304	152970853	ldcA	KPN_02306	-	L,D-carboxypeptidase A
2272	 63.09	0	2528860..2530593	+	577	152970854	ycgO	KPN_02307	-	potassium/proton antiporter
2273	 65.17	+1	2530610..2531680	-	356	152970855	alr	KPN_02308	-	alanine racemase
2274	 63.82	+1	2531690..2532988	-	432	152970856	dadA	KPN_02309	-	D-amino acid dehydrogenase small subunit
2275	 54.89	0	2533247..2534842	+	531	152970857	ycgB	KPN_02310	-	hypothetical protein
2276	 57.08	0	2534917..2535636	-	239	152970858	fadR	KPN_02311	-	fatty acid metabolism regulator
2277	 60.83	0	2535843..2537435	+	530	152970859	nhaB	KPN_02312	-	sodium/proton antiporter
2278	 57.71	0	2537615..2538094	+	159	152970860	dsbB	KPN_02313	-	disulfide bond formation protein B
2279	 56.52	0	2538245..2538589	+	114	152970861	-	KPN_02314	-	hypothetical protein
2280	 57.94	0	2538596..2539042	-	148	152970862	ycgN	KPN_02315	-	hypothetical protein
2281	 58.33	0	2539137..2539796	-	219	152970863	ycgM	KPN_02316	-	hypothetical protein
2282	 47.87	-1	2539813..2540094	-	93	152970864	ycgL	KPN_02317	-	hypothetical protein
2283	 53.36	0	2540221..2540919	+	232	152970865	minC	KPN_02318	-	septum formation inhibitor
2284	 54.24	0	2540943..2541755	+	270	152970866	minD	KPN_02319	-	cell division inhibitor MinD
2285	 52.96	0	2541759..2542028	+	89	152970867	minE	KPN_02320	-	cell division topological specificity factor MinE
2286	 62.46	0	2542106..2543221	-	371	152970868	rnd	KPN_02321	-	ribonuclease D
2287	 56.89	0	2543303..2545021	-	572	152970869	fadD	KPN_02322	-	long-chain-fatty-acid--CoA ligase
2288	 62.54	0	2545194..2545775	-	193	152970870	yeaY	KPN_02323	-	putative outer membrane protein
2289	 63.79	+1	2545814..2546509	-	231	152970871	yeaZ	KPN_02324	-	putative glycoprotein endopeptidase
2290	 62.85	0	2546655..2548565	-	636	152970872	yoaA	KPN_02325	-	putative ATP-dependent helicase, SOS repair
2291	 56.81	0	2548696..2549040	+	114	152970873	yoaB	KPN_02326	-	hypothetical protein
2292	 56.45	0	2549041..2549226	-	61	152970874	yoaH	KPN_02327	-	hypothetical protein
2293	 61.80	0	2549315..2550670	+	451	152970875	pabB	KPN_02328	-	para-aminobenzoate synthase component I
2294	 65.80	+1	2550674..2551252	+	192	152970876	yeaB	KPN_02329	-	hypothetical protein
2295	 59.74	0	2551481..2552779	+	432	152970877	sdaA	KPN_02330	-	L-serine deaminase
2296	 58.65	0	2552962..2554545	+	527	152970878	yoaD	KPN_02331	-	hypothetical protein
2297	 59.10	0	2554579..2556138	-	519	152970879	yoaE	KPN_02332	-	putative transmembrane protein
2298	 54.63	0	2556585..2557556	+	323	152970880	manX	KPN_02333	-	PTS enzyme IIAB, mannose-specific
2299	 58.80	0	2557613..2558413	+	266	152970881	manY	KPN_02334	-	PTS enzyme IIC, mannose-specific
2300	 55.87	0	2558417..2559277	+	286	152970882	manZ	KPN_02335	-	mannose-specific PTS system protein IID
2301	 50.33	-1	2559340..2559798	+	152	152970883	yobD	KPN_02336	-	hypothetical protein
2302	 59.51	0	2560253..2560783	+	176	152970884	yebN	KPN_02337	-	putative membrane protein, terpenoid synthase-like protein
2303	 62.64	0	2560787..2561581	-	264	152970885	rrmA	KPN_02338	-	23S rRNA m1G745 methyltransferase
2304	 60.21	0	2561643..2563391	-	582	152970886	-	KPN_02339	-	division-specific transpeptidase, penicillin-binding protein 3
2305	 47.14	-1	2563579..2563788	-	69	152970887	cspC	KPN_02340	-	cold shock-like protein CspC
2306	 55.33	0	2564536..2564826	-	96	152970888	yebO	KPN_02341	-	hypothetical protein
2307	 50.00	-1	2565204..2565443	+	79	152970889	-	KPN_02342	-	putative outer membrane or exported
2308	 54.67	0	2565500..2566291	-	263	152970890	kdgR	KPN_02343	-	IclR family transcriptional regulator
2309	 62.22	0	2566469..2567839	+	456	152970891	yebQ	KPN_02344	-	putative transport protein
2310	 56.84	0	2567905..2568789	-	294	152970892	htpX	KPN_02345	-	heat shock protein HtpX
2311	 55.69	0	2569024..2571072	-	682	152970893	prc	KPN_02346	-	carboxy-terminal protease
2312	 56.49	0	2571092..2571769	-	225	152970894	proQ	KPN_02347	-	putative solute/DNA competence effector
2313	 57.83	0	2571867..2572364	-	165	152970895	yebR	KPN_02348	-	hypothetical protein
2314	 58.96	0	2572536..2573780	+	414	152970896	yebS	KPN_02349	-	hypothetical protein
2315	 59.45	0	2573749..2576382	+	877	152970897	-	KPN_02350	-	hypothetical protein
2316	 62.49	0	2576551..2577939	+	462	152970898	yebU	KPN_02351	-	rRNA (cytosine-C(5)-)-methyltransferase RsmF
2317	 54.58	0	2578055..2578294	+	79	152970899	yebV	KPN_02352	-	hypothetical protein
2318	 52.08	0	2578392..2578583	+	63	152970900	yebW	KPN_02353	-	hypothetical protein
2319	 61.01	0	2578580..2579233	-	217	152970901	pphA	KPN_02354	-	serine/threonine protein phosphatase 1
2320	 58.82	0	2579390..2580358	+	322	152970902	-	KPN_02355	-	putative enzyme
2321	 55.75	0	2581241..2581579	-	112	152970903	yebY	KPN_02356	-	hypothetical protein
2322	 63.33	0	2581596..2582465	-	289	152970904	yebZ	KPN_02357	-	putative resistance protein
2323	 60.16	0	2582469..2582852	-	127	152970905	yobA	KPN_02358	-	hypothetical protein
2324	 53.42	0	2582953..2583186	+	77	152970906	holE	KPN_02359	-	DNA polymerase III subunit theta
2325	 57.73	0	2583265..2583924	+	219	152970907	exoX	KPN_02360	-	exodeoxyribonuclease X
2326	 57.45	0	2583928..2585955	-	675	152970908	ptrB	KPN_02361	-	protease 2
2327	 61.06	0	2586109..2586768	-	219	152970909	yebE	KPN_02362	-	hypothetical protein
2328	 60.06	0	2586908..2587255	-	115	152970910	yebG	KPN_02363	-	SOS regulon DNA damage-inducible protein
2329	 63.70	+1	2587400..2588578	+	392	152970911	purT	KPN_02364	-	phosphoribosylglycinamide formyltransferase 2
2330	 60.90	0	2588635..2589276	-	213	152970912	eda	KPN_02365	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
2331	 61.17	0	2589315..2591114	-	599	152970913	edd	KPN_02366	-	phosphogluconate dehydratase
2332	 56.84	0	2591349..2592824	-	491	152970914	zwf	KPN_02367	-	glucose-6-phosphate 1-dehydrogenase
2333	 54.05	0	2593162..2594049	+	295	152970915	yebK	KPN_02368	-	DNA-binding transcriptional regulator HexR
2334	 59.53	0	2594175..2595617	+	480	152970916	pykA	KPN_02369	-	pyruvate kinase
2335	 57.03	0	2595658..2596632	-	324	152970917	msbB	KPN_02370	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
2336	 60.30	0	2596750..2598006	-	418	152970918	yebA	KPN_02371	-	hypothetical protein
2337	 54.74	0	2598085..2598981	-	298	152970919	znuA	KPN_02372	-	high-affinity zinc transporter periplasmic component
2338	 61.35	0	2599108..2599860	+	250	152970920	znuC	KPN_02373	-	high-affinity zinc transporter ATPase
2339	 61.83	0	2599860..2600645	+	261	152970921	znuB	KPN_02374	-	high-affinity zinc transporter membrane component
2340	 61.13	0	2600709..2601719	-	336	152970922	ruvB	KPN_02375	-	Holliday junction DNA helicase B
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.