IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2162	 59.30	0	2402481..2403389	-	302	152970744	oppC	KPN_02195	-	oligopeptide transport permease protein
2163	 55.92	0	2403404..2404324	-	306	152970745	oppB	KPN_02196	-	oligopeptide transporter permease
2164	 53.52	0	2404410..2406044	-	544	152970746	oppA	KPN_02197	-	oligopeptide ABC transporter periplasmic substrate-binding protein
2165	 55.09	0	2406782..2407429	-	215	152970747	ychE	KPN_02198	-	hypothetical protein
2166	 54.75	0	2407906..2410581	+	891	152970748	adhE	KPN_02199	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2167	 54.17	0	2410729..2411256	-	175	152970749	tdk	KPN_02200	-	thymidine kinase
2168	 48.53	-1	2411908..2412315	+	135	152970750	hns	KPN_02201	-	global DNA-binding transcriptional dual regulator H-NS
2169	 51.94	-1	2412437..2413339	-	300	152970751	galU	KPN_02202	-	UTP--glucose-1-phosphate uridylyltransferase subunit GalU
2170	 52.17	0	2413537..2414550	-	337	152970752	hnr	KPN_02203	-	response regulator of RpoS
2171	 56.70	0	2414640..2415542	-	300	152970753	ychK	KPN_02204	-	hypothetical protein
2172	 50.83	-1	2415754..2416113	+	119	152970754	ychJ	KPN_02205	-	hypothetical protein
2173	 53.74	0	2416156..2416998	+	280	152970755	purU	KPN_02206	-	formyltetrahydrofolate deformylase
2174	 59.91	0	2418183..2418626	-	147	152970756	-	KPN_02209	-	putative regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
2175	 60.47	0	2418734..2419282	+	182	152970757	-	KPN_02210	-	hypothetical protein
2176	 59.59	0	2419627..2420304	-	225	152970758	narI	KPN_02211	-	nitrate reductase 1, cytochrome b(NR), gamma subunit
2177	 60.62	0	2420304..2421014	-	236	152970759	narJ	KPN_02212	-	nitrate reductase 1, delta subunit, assembly function
2178	 57.88	0	2421011..2422546	-	511	152970760	narH	KPN_02213	-	nitrate reductase 1, Fe-S (beta) subunit
2179	 58.84	0	2422543..2426286	-	1247	152970761	narG	KPN_02214	-	nitrate reductase 1, alpha subunit
2180	 58.96	0	2426692..2428080	-	462	152970762	narK	KPN_02215	-	nitrite extrusion protein
2181	 60.71	0	2428392..2430170	+	592	152970763	narX	KPN_02216	-	nitrate/nitrite sensor protein NarX
2182	 58.22	0	2430181..2430831	+	216	152970764	narL	KPN_02217	-	transcriptional regulator NarL
2183	 60.88	0	2430828..2432210	-	460	152970765	ychP	KPN_02218	-	hypothetical protein
2184	 67.67	+1	2432362..2434962	-	866	152970766	-	KPN_02219	-	putative nitrate reductase
2185	 65.40	+1	2434962..2439065	-	1367	152970767	-	KPN_02220	-	putative nitrite reductase [NAD(P)H] large subunit
2186	 61.85	0	2439040..2439828	-	262	152970768	nasD	KPN_02221	-	putative nitrate transport protein nasD
2187	 64.29	+1	2439838..2440722	-	294	152970769	nasE	KPN_02222	-	putative nitrate transporter component; NasE
2188	 65.25	+1	2440724..2442067	-	447	152970770	nasF	KPN_02223	-	nitrate transporter component; NasF
2189	 63.28	0	2442223..2443404	-	393	152970771	-	KPN_02224	-	nitrate regulatory protein
2190	 62.99	0	2443472..2443825	+	117	152970772	ychN	KPN_02225	-	putative phosphatase
2191	 58.02	0	2444063..2444305	+	80	152970773	-	KPN_02226	-	hypothetical protein
2192	 64.24	+1	2444523..2445182	-	219	152970774	chaC	KPN_02227	-	cation transport regulator
2193	 50.00	-1	2445340..2445591	-	83	152970775	chaB	KPN_02228	-	cation transport regulator
2194	 58.76	0	2445834..2446934	+	366	152970776	chaA	KPN_02229	-	calcium/sodium:proton antiporter
2195	 57.31	0	2447021..2447875	-	284	152970777	kdsA	KPN_02230	-	2-dehydro-3-deoxyphosphooctonate aldolase
2196	 58.30	0	2447915..2448727	-	270	152970778	ychA	KPN_02231	-	putative transcriptional regulator
2197	 54.45	0	2448731..2449123	-	130	152970779	ychQ	KPN_02232	-	putative transcriptional regulator
2198	 65.73	+1	2449123..2449974	-	283	152970780	hemK	KPN_02233	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2199	 61.68	0	2449971..2451053	-	360	152970781	prfA	KPN_02234	-	peptide chain release factor 1
2200	 60.46	0	2451096..2452352	-	418	152970782	hemA	KPN_02235	-	glutamyl-tRNA reductase
2201	 60.62	0	2452623..2453234	+	203	152970783	lolB	KPN_02236	-	outer membrane lipoprotein LolB
2202	 59.98	0	2453231..2454082	+	283	152970784	ispE	KPN_02237	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2203	 53.99	0	2454275..2455213	+	312	152970785	prsA	KPN_02238	-	ribose-phosphate pyrophosphokinase
2204	 62.79	0	2455365..2457017	+	550	152970786	ychM	KPN_02239	-	putative sulfate transporter YchM
2205	 62.85	0	2457018..2458064	-	348	152970787	-	KPN_02240	-	putative albicidin resistance protein
2206	 55.80	0	2458286..2458561	-	91	152970788	ychH	KPN_02241	-	hypothetical protein
2207	 57.78	0	2458834..2459418	+	194	152970789	pth	KPN_02242	-	peptidyl-tRNA hydrolase
2208	 56.68	0	2459536..2460627	+	363	152970790	ychF	KPN_02243	-	translation-associated GTPase
2209	 58.18	0	2460709..2461038	-	109	152970791	-	KPN_02244	-	hypothetical protein
2210	 56.08	0	2461122..2461631	-	169	152970792	-	KPN_02245	-	hypothetical protein
2211	 60.75	0	2461639..2461959	+	106	152970793	-	KPN_02246	-	hypothetical protein
2212	 65.18	+1	2462169..2463584	-	471	152970794	-	KPN_02247	-	hypothetical protein
2213	 58.66	0	2464050..2464586	-	178	152970795	-	KPN_02248	-	hypothetical protein
2214	 61.99	0	2464567..2465613	-	348	152970796	-	KPN_02249	-	hypothetical protein
2215	 60.60	0	2465613..2467376	-	587	152970797	-	KPN_02250	-	hypothetical protein
2216	 60.77	0	2467510..2470920	-	1136	152970798	-	KPN_02251	-	hypothetical protein
2217	 55.09	0	2470904..2472061	-	385	152970799	-	KPN_02252	-	hypothetical protein
2218	 53.56	0	2472065..2472331	-	88	152970800	-	KPN_02253	-	hypothetical protein
2219	 38.26	-2	2472629..2472892	-	87	152970801	-	KPN_02254	-	hypothetical protein
2220	 39.42	-2	2473075..2473419	-	114	152970802	-	KPN_02255	-	hypothetical protein
2221	 43.06	-2	2473552..2474445	-	297	152970803	-	KPN_02256	-	hypothetical protein
2222	 42.17	-2	2474629..2475522	-	297	152970804	-	KPN_02257	-	sulfatase modifying factor 1 precursor-like protein
2223	 40.20	-2	2475544..2475849	-	101	152970805	-	KPN_02258	-	hypothetical protein
2224	 46.68	-1	2475873..2477063	-	396	152970806	-	KPN_02259	-	hypothetical protein
2225	 32.24	-2	2477087..2477269	-	60	152970807	-	KPN_02260	-	hypothetical protein
2226	 35.70	-2	2477363..2477869	-	168	152970808	-	KPN_02261	-	hypothetical protein
2227	 38.43	-2	2477866..2478375	-	169	152970809	-	KPN_02262	-	hypothetical protein
2228	 49.12	-1	2478376..2479731	-	451	152970810	-	KPN_02263	-	hypothetical protein
2229	 36.67	-2	2480025..2480534	-	169	152970811	-	KPN_02264	-	hypothetical protein
2230	 35.95	-2	2480524..2480676	-	50	152970812	-	KPN_02265	-	hypothetical protein
2231	 39.64	-2	2480771..2481277	-	168	152970813	-	KPN_02266	-	hypothetical protein
2232	 37.45	-2	2481274..2481783	-	169	152970814	-	KPN_02267	-	hypothetical protein
2233	 49.41	-1	2481784..2483139	-	451	152970815	-	KPN_02268	-	hypothetical protein
2234	 39.90	-2	2483433..2483630	-	65	152970816	-	KPN_02269	-	hypothetical protein
2235	 34.86	-2	2483617..2483943	-	108	152970817	-	KPN_02270	-	hypothetical protein
2236	 38.04	-2	2483940..2484449	-	169	152970818	-	KPN_02271	-	hypothetical protein
2237	 48.37	-1	2484450..2485832	-	460	152970819	-	KPN_02272	-	hypothetical protein
2238	 57.14	0	2485829..2488315	-	828	152970820	-	KPN_02273	-	hypothetical protein
2239	 65.96	+1	2488774..2490471	-	565	152970821	-	KPN_02274	-	hypothetical protein
2240	 63.52	0	2491125..2492492	-	455	152970822	-	KPN_02275	-	hypothetical protein
2241	 41.87	-2	2492703..2492948	-	81	152970823	-	KPN_02276	-	hypothetical protein
2242	 53.40	0	2493386..2494018	+	210	152970824	-	KPN_02277	-	putative nucleoprotein/polynucleotide-associated enzyme
2243	 63.89	+1	2494044..2494835	-	263	152970825	-	KPN_02278	-	putative ribosomal large subunit pseudouridine synthase A
2244	 49.48	-1	2494933..2495415	+	160	152970826	-	KPN_02279	-	cold shock protein E
2245	 61.56	0	2495525..2496424	+	299	152970827	-	KPN_02280	-	LysR family transcriptional regulator
2246	 65.80	+1	2496399..2497208	-	269	152970828	-	KPN_02281	-	molybdate ABC transporter periplasmic substrate-binding protein
2247	 60.06	0	2497220..2498611	-	463	152970829	-	KPN_02282	-	major facilitator superfamily permease
2248	 64.51	+1	2498819..2499745	-	308	152970830	-	KPN_02283	-	transcriptional regulator LysR
2249	 59.12	0	2499844..2500320	+	158	152970831	-	KPN_02284	-	putative acetyltransferase
2250	 61.78	0	2500370..2501986	-	538	152970832	pckA	KPN_02285	-	phosphoenolpyruvate carboxykinase
2251	 52.35	0	2502297..2503190	+	297	152970833	yjiE	KPN_02286	-	LysR family transcriptional regulator
2252	 64.03	+1	2503196..2503915	-	239	152970834	livF	KPN_02287	-	ATP-binding component of leucine transport
2253	 61.53	0	2503912..2504787	-	291	152970835	livG	KPN_02288	-	ATP-binding component of high-affinity branched-chain amino acid transport system
2254	 62.39	0	2504784..2506070	-	428	152970836	livM	KPN_02289	-	high-affinity branched-chain amino acid transport
2255	 62.15	0	2506080..2507054	-	324	152970837	livH	KPN_02290	-	high-affinity branched-chain amino acid ABC transporter membrane protein
2256	 62.16	0	2507104..2508168	-	354	152970838	livJ	KPN_02291	-	high-affinity branched-chain amino acid ABC transporter periplasmic substrate-binding protein
2257	 62.10	0	2508650..2510950	-	766	152970839	tdcE	KPN_02292	-	formate acetyltransferase 3
2258	 65.59	+1	2510973..2512181	-	402	152970840	tdcD	KPN_02293	-	propionate/acetate kinase
2259	 56.91	0	2512209..2513540	-	443	152970841	tdcC	KPN_02294	-	threonine/serine transporter TdcC
2260	 53.64	0	2513566..2514555	-	329	152970842	tdcB	KPN_02295	-	threonine dehydratase
2261	 55.41	0	2514649..2515590	-	313	152970843	tdcA	KPN_02296	-	DNA-binding transcriptional activator TdcA
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.