IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2099	 56.81	0	2336142..2336354	-	70	152970681	ydhZ	KPN_02132	-	hypothetical protein
2100	 56.40	0	2336860..2338272	+	470	152970682	pykF	KPN_02133	-	pyruvate kinase
2101	 51.90	-1	2338585..2338821	+	78	152970683	lpp	KPN_02134	-	murein lipoprotein
2102	 60.59	0	2338883..2339869	-	328	152970684	ynhG	KPN_02135	-	putative ATP synthase subunit
2103	 56.35	0	2339969..2340385	-	138	152970685	sufE	KPN_02136	-	cysteine desufuration protein SufE
2104	 64.21	+1	2340397..2341617	-	406	152970686	sufS	KPN_02137	-	selenocysteine lyase
2105	 62.51	0	2341614..2342888	-	424	152970687	sufD	KPN_02138	-	cysteine desulfurase activator complex subunit SufD
2106	 54.89	0	2342863..2343609	-	248	152970688	sufC	KPN_02139	-	cysteine desulfurase ATPase component
2107	 57.93	0	2343626..2345113	-	495	152970689	sufB	KPN_02140	-	cysteine desulfurase activator complex subunit SufB
2108	 56.35	0	2345116..2345493	-	125	152970690	-	KPN_02141	-	iron-sulfur cluster assembly scaffold protein
2109	 53.54	0	2345976..2346173	-	65	152970691	-	KPN_02142	-	hypothetical protein
2110	 63.88	+1	2346553..2347737	+	394	152970692	-	KPN_02143	-	L-lactate dehydrogenase
2111	 62.98	0	2347793..2350885	-	1030	152970693	-	KPN_02144	-	putative efflux protein
2112	 70.09	+2	2350882..2351991	-	369	152970694	-	KPN_02145	-	HlyD family secretion protein
2113	 58.29	0	2352066..2352602	-	178	152970695	-	KPN_02146	-	putative regulatory protein  TetR
2114	 65.26	+1	2352776..2353771	-	331	152970696	-	KPN_02147	-	hypothetical protein
2115	 64.80	+1	2353868..2354779	+	303	152970697	-	KPN_02148	-	LysR family transcriptional regulator
2116	 57.38	0	2354968..2355936	+	322	152970698	-	KPN_02149	-	putative ABC transporter periplasmic solute-binding protein
2117	 64.55	+1	2355936..2356973	+	345	152970699	-	KPN_02150	-	iron ABC transporter, permease protein, putative
2118	 60.10	0	2356973..2357734	+	253	152970700	-	KPN_02151	-	ATP-binding component of citrate-dependent iron(III) transport protein
2119	 58.43	0	2359061..2360092	-	343	152970701	-	KPN_02152	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2120	 48.22	-1	2360116..2361096	-	326	152970702	-	KPN_02153	-	hypothetical protein
2121	 38.89	-2	2361444..2361515	+	23	152970703	-	KPN_02154	-	hypothetical protein
2122	 62.31	0	2361664..2361984	+	106	152970704	-	KPN_02155	-	hypothetical protein
2123	 49.80	-1	2362082..2362330	-	82	152970705	yeaQ	KPN_02156	-	hypothetical protein
2124	 60.83	0	2362535..2362945	-	136	152970706	ydiI	KPN_02157	-	hypothetical protein
2125	 60.88	0	2362942..2365998	-	1018	152970707	ydiJ	KPN_02158	-	putative oxidase
2126	 61.64	0	2366217..2367329	+	370	152970708	ydiK	KPN_02159	-	putative inner membrane protein
2127	 59.31	0	2367712..2370090	-	792	152970709	ppsA	KPN_02160	-	phosphoenolpyruvate synthase
2128	 57.41	0	2370421..2371263	+	280	152970710	ydiA	KPN_02161	-	hypothetical protein
2129	 62.18	0	2371418..2372464	+	348	152970711	aroH	KPN_02162	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2130	 50.00	-1	2372572..2372799	+	75	152970712	ydiE	KPN_02163	-	hypothetical protein
2131	 63.20	0	2372829..2374271	-	480	152970713	ydiU	KPN_02164	-	hypothetical protein
2132	 62.37	0	2374385..2374849	-	154	152970714	nlpC	KPN_02165	-	lipoprotein
2133	 64.13	+1	2374929..2375678	-	249	152970715	btuD	KPN_02166	-	vitamin B12-transporter ATPase
2134	 57.61	0	2375678..2376229	-	183	152970716	btuE	KPN_02167	-	putative glutathione peroxidase
2135	 54.06	0	2376466..2377266	+	266	152970717	-	KPN_02168	-	putative outer membrane lipoprotein
2136	 64.66	+1	2377303..2378298	-	331	152970718	btuC	KPN_02169	-	vtamin B12-transporter permease
2137	 58.16	0	2378413..2379846	-	477	152970719	-	KPN_02170	-	putative H+/gluconate symporter and related permeases
2138	 57.81	0	2380127..2381041	+	304	152970720	-	KPN_02171	-	LysR family transcriptional regulator
2139	 58.77	0	2381091..2382344	+	417	152970721	-	KPN_02172	-	putative glycine/D-amino acid oxidases (deaminating)
2140	 55.37	0	2382341..2382694	+	117	152970722	-	KPN_02173	-	putative translation initiation inhibitor
2141	 51.33	-1	2382747..2383046	-	99	152970723	himA	KPN_02174	-	integration host factor subunit alpha
2142	 59.46	0	2383051..2385438	-	795	152970724	pheT	KPN_02175	-	phenylalanyl-tRNA synthetase subunit beta
2143	 57.42	0	2385454..2386437	-	327	152970725	pheS	KPN_02176	-	phenylalanyl-tRNA synthetase subunit alpha
2144	 48.46	-1	2386744..2387100	-	118	152970726	rplT	KPN_02177	-	50S ribosomal protein L20
2145	 47.89	-1	2387151..2387363	-	70	152970727	rpmI	KPN_02178	-	50S ribosomal protein L35
2146	 47.95	-1	2387441..2387782	-	113	152970728	infC	KPN_02179	-	translation initiation factor IF-3
2147	 52.22	0	2387987..2389855	-	622	152970729	thrS	KPN_02180	-	threonyl-tRNA synthetase
2148	 55.98	0	2390348..2390581	-	77	152970730	-	KPN_02181	-	hypothetical protein
2149	 56.89	0	2390853..2391578	-	241	152970731	ydiY	KPN_02182	-	hypothetical protein
2150	 63.02	0	2391967..2392899	+	310	152970732	pfkB	KPN_02183	-	6-phosphofructokinase 2
2151	 58.60	0	2392994..2393278	+	94	152970733	ydiZ	KPN_02184	-	hypothetical protein
2152	 56.56	0	2393357..2394256	+	299	152970734	yniA	KPN_02185	-	protein kinase-like protein
2153	 60.37	0	2394300..2395046	-	248	152970735	tonB	KPN_02186	-	transport protein TonB
2154	 56.23	0	2395257..2395553	+	98	152970736	yciI	KPN_02187	-	YciI-like protein
2155	 43.98	-2	2396235..2396882	+	215	152970737	-	KPN_02188	-	hypothetical protein
2156	 56.90	0	2397368..2397541	-	57	152970738	-	KPN_02189	-	hypothetical protein
2157	 58.11	0	2397685..2399145	+	486	152970739	cls	KPN_02190	-	cardiolipin synthetase
2158	 53.94	0	2399180..2399509	+	109	152970740	yciU	KPN_02191	-	dsDNA-mimic protein
2159	 54.23	0	2399572..2400399	-	275	152970741	kch	KPN_02192	-	putative potassium channel protein
2160	 57.41	0	2400455..2401459	-	334	152970742	oppF	KPN_02193	-	ATP-binding protein of oligopeptide ABC transport system
2161	 58.48	0	2401456..2402469	-	337	152970743	oppD	KPN_02194	-	oligopeptide transporter ATP-binding component
2162	 59.30	0	2402481..2403389	-	302	152970744	oppC	KPN_02195	-	oligopeptide transport permease protein
2163	 55.92	0	2403404..2404324	-	306	152970745	oppB	KPN_02196	-	oligopeptide transporter permease
2164	 53.52	0	2404410..2406044	-	544	152970746	oppA	KPN_02197	-	oligopeptide ABC transporter periplasmic substrate-binding protein
2165	 55.09	0	2406782..2407429	-	215	152970747	ychE	KPN_02198	-	hypothetical protein
2166	 54.75	0	2407906..2410581	+	891	152970748	adhE	KPN_02199	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2167	 54.17	0	2410729..2411256	-	175	152970749	tdk	KPN_02200	-	thymidine kinase
2168	 48.53	-1	2411908..2412315	+	135	152970750	hns	KPN_02201	-	global DNA-binding transcriptional dual regulator H-NS
2169	 51.94	-1	2412437..2413339	-	300	152970751	galU	KPN_02202	-	UTP--glucose-1-phosphate uridylyltransferase subunit GalU
2170	 52.17	0	2413537..2414550	-	337	152970752	hnr	KPN_02203	-	response regulator of RpoS
2171	 56.70	0	2414640..2415542	-	300	152970753	ychK	KPN_02204	-	hypothetical protein
2172	 50.83	-1	2415754..2416113	+	119	152970754	ychJ	KPN_02205	-	hypothetical protein
2173	 53.74	0	2416156..2416998	+	280	152970755	purU	KPN_02206	-	formyltetrahydrofolate deformylase
2174	 59.91	0	2418183..2418626	-	147	152970756	-	KPN_02209	-	putative regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
2175	 60.47	0	2418734..2419282	+	182	152970757	-	KPN_02210	-	hypothetical protein
2176	 59.59	0	2419627..2420304	-	225	152970758	narI	KPN_02211	-	nitrate reductase 1, cytochrome b(NR), gamma subunit
2177	 60.62	0	2420304..2421014	-	236	152970759	narJ	KPN_02212	-	nitrate reductase 1, delta subunit, assembly function
2178	 57.88	0	2421011..2422546	-	511	152970760	narH	KPN_02213	-	nitrate reductase 1, Fe-S (beta) subunit
2179	 58.84	0	2422543..2426286	-	1247	152970761	narG	KPN_02214	-	nitrate reductase 1, alpha subunit
2180	 58.96	0	2426692..2428080	-	462	152970762	narK	KPN_02215	-	nitrite extrusion protein
2181	 60.71	0	2428392..2430170	+	592	152970763	narX	KPN_02216	-	nitrate/nitrite sensor protein NarX
2182	 58.22	0	2430181..2430831	+	216	152970764	narL	KPN_02217	-	transcriptional regulator NarL
2183	 60.88	0	2430828..2432210	-	460	152970765	ychP	KPN_02218	-	hypothetical protein
2184	 67.67	+1	2432362..2434962	-	866	152970766	-	KPN_02219	-	putative nitrate reductase
2185	 65.40	+1	2434962..2439065	-	1367	152970767	-	KPN_02220	-	putative nitrite reductase [NAD(P)H] large subunit
2186	 61.85	0	2439040..2439828	-	262	152970768	nasD	KPN_02221	-	putative nitrate transport protein nasD
2187	 64.29	+1	2439838..2440722	-	294	152970769	nasE	KPN_02222	-	putative nitrate transporter component; NasE
2188	 65.25	+1	2440724..2442067	-	447	152970770	nasF	KPN_02223	-	nitrate transporter component; NasF
2189	 63.28	0	2442223..2443404	-	393	152970771	-	KPN_02224	-	nitrate regulatory protein
2190	 62.99	0	2443472..2443825	+	117	152970772	ychN	KPN_02225	-	putative phosphatase
2191	 58.02	0	2444063..2444305	+	80	152970773	-	KPN_02226	-	hypothetical protein
2192	 64.24	+1	2444523..2445182	-	219	152970774	chaC	KPN_02227	-	cation transport regulator
2193	 50.00	-1	2445340..2445591	-	83	152970775	chaB	KPN_02228	-	cation transport regulator
2194	 58.76	0	2445834..2446934	+	366	152970776	chaA	KPN_02229	-	calcium/sodium:proton antiporter
2195	 57.31	0	2447021..2447875	-	284	152970777	kdsA	KPN_02230	-	2-dehydro-3-deoxyphosphooctonate aldolase
2196	 58.30	0	2447915..2448727	-	270	152970778	ychA	KPN_02231	-	putative transcriptional regulator
2197	 54.45	0	2448731..2449123	-	130	152970779	ychQ	KPN_02232	-	putative transcriptional regulator
2198	 65.73	+1	2449123..2449974	-	283	152970780	hemK	KPN_02233	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.