IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1997	 47.71	-1	2224338..2224664	+	108	152970579	-	KPN_02030	-	hypothetical protein
1998	 59.24	0	2225107..2226102	-	331	152970580	-	KPN_02031	-	putative dioxygenase
1999	 66.95	+1	2226117..2227526	-	469	152970581	-	KPN_02032	-	amidohydrolase
2000	 61.25	0	2227547..2228488	-	313	152970582	-	KPN_02033	-	ABC transporter, periplasmic binding component-related protein
2001	 58.33	0	2228831..2229730	-	299	152970583	-	KPN_02034	-	LysR family transcriptional regulator
2002	 61.07	0	2230013..2230906	+	297	152970584	-	KPN_02035	-	putative vanillate O-demethylase oxidoreductase
2003	 68.46	+1	2230918..2232201	+	427	152970585	-	KPN_02036	-	putative cytosine deaminase
2004	 61.46	0	2232191..2232670	+	159	152970586	-	KPN_02037	-	putative endoribonuclease
2005	 63.95	+1	2232667..2233548	+	293	152970587	-	KPN_02038	-	putative creatininase
2006	 60.06	0	2233548..2234531	+	327	152970588	-	KPN_02039	-	ABC transporter periplasmic-binding protein
2007	 63.78	+1	2234528..2235358	+	276	152970589	-	KPN_02040	-	putative ABC transporter, ATP-binding protein
2008	 61.03	0	2235360..2236175	+	271	152970590	-	KPN_02041	-	putative ABC transporter, ATP-binding protein
2009	 63.92	+1	2236202..2237623	+	473	152970591	-	KPN_02042	-	putative FAD/FMN-containing dehydrogenases
2010	 49.48	-1	2238008..2238484	+	158	152970592	-	KPN_02043	-	hypothetical protein
2011	 46.62	-1	2238486..2238914	+	142	152970593	-	KPN_02044	-	hypothetical protein
2012	 43.45	-2	2238911..2239246	+	111	152970594	-	KPN_02045	-	hypothetical protein
2013	 60.89	0	2239337..2240704	-	455	152970595	-	KPN_02046	-	putative chromate transporter
2014	 62.40	0	2240673..2241632	-	319	152970596	-	KPN_02047	-	chromate resistance protein ChrB
2015	 65.65	+1	2241761..2242939	-	392	152970597	-	KPN_02048	-	hypothetical protein
2016	 60.24	0	2243141..2243389	-	82	152970598	-	KPN_02049	-	putative 4-oxalocrotonate tautomerase
2017	 49.73	-1	2245389..2246126	-	245	152970599	-	KPN_02050	-	putative enzyme
2018	 57.45	0	2246587..2246727	+	46	152970600	-	KPN_02051	-	hypothetical protein
2019	 62.60	0	2246772..2247656	-	294	152970601	-	KPN_02052	-	LysR family transcriptional regulator
2020	 64.12	+1	2247803..2248510	+	235	152970602	-	KPN_02053	-	putative acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
2021	 62.56	0	2248512..2249168	+	218	152970603	-	KPN_02054	-	putative acetyl-CoA:acetoacetyl-CoA transferase beta subunit
2022	 68.53	+1	2249178..2250359	+	393	152970604	-	KPN_02055	-	beta-ketothiolase
2023	 68.61	+1	2250371..2251294	+	307	152970605	-	KPN_02056	-	3-hydroxybutyryl-CoA dehydrogenase
2024	 64.98	+1	2252757..2253527	+	256	152970606	-	KPN_02057	-	3-hydroxybutyrate dehydrogenase
2025	 61.28	0	2253547..2254419	-	290	152970607	-	KPN_02058	-	LysR family transcriptional regulator
2026	 61.65	0	2254628..2255305	+	225	152970608	-	KPN_02059	-	acetolactate decarboxylase
2027	 63.33	0	2255315..2256994	+	559	152970609	-	KPN_02060	-	acetolactate synthase
2028	 60.05	0	2257018..2257788	+	256	152970610	-	KPN_02061	-	acetoin reductase
2029	 39.56	-2	2258183..2258824	+	213	152970611	-	KPN_02062	-	hypothetical protein
2030	 42.27	-2	2258953..2259489	-	178	152970612	-	KPN_02063	-	putative acetyl transferase
2031	 49.02	-1	2259565..2262681	-	1038	152970613	-	KPN_02064	-	acridine efflux pump
2032	 29.63	-2	2263833..2264183	-	116	152970614	-	KPN_02065	-	putative transport protein
2033	 46.48	-1	2264472..2265209	+	245	152970615	-	KPN_02066	-	response regulator
2034	 42.94	-2	2265206..2266267	+	353	152970616	-	KPN_02067	-	sensor histidine protein kinase (RstA regulator)
2035	 55.25	0	2267024..2268004	+	326	152970617	-	KPN_02068	-	transposase, IS4
2036	 46.34	-1	2268636..2269673	-	345	152970618	-	KPN_02069	-	L, D-carboxypeptidase A (in murein recycling)
2037	 47.66	-1	2269852..2270214	-	120	152970619	-	KPN_02070	-	TonB protein
2038	 44.87	-2	2270996..2271385	-	129	152970620	-	KPN_02071	-	putative enzyme
2039	 44.44	-2	2271730..2272206	-	158	152970621	-	KPN_02072	-	putative acyltransferase
2040	 68.56	+1	2273410..2274252	-	280	152970622	ccmH	KPN_02073	-	subunit of heme lyase
2041	 61.22	0	2274249..2274707	-	152	152970623	ccmH	KPN_02074	-	subunit of heme lyase
2042	 63.42	0	2274707..2275261	-	184	152970624	ccmG	KPN_02075	-	heme lyase/disulfide oxidoreductase (thiol:disulfide interchange protein)
2043	 64.67	+1	2275258..2277210	-	650	152970625	ccmF	KPN_02076	-	cytochrome c-type biogenesis protein
2044	 62.31	0	2277207..2277665	-	152	152970626	ccmE	KPN_02077	-	cytochrome c biogenesis
2045	 67.53	+1	2277649..2277879	-	76	152970627	ccmD	KPN_02078	-	heme exporter protein C
2046	 65.58	+1	2277876..2278613	-	245	152970628	ccmC	KPN_02079	-	heme ABC transporter membrane protein
2047	 69.24	+1	2278663..2279322	-	219	152970629	ccmB	KPN_02080	-	heme ABC transporter membrane protein
2048	 68.91	+1	2279319..2279942	-	207	152970630	ccmA	KPN_02081	-	cytochrome c biogenesis protein CcmA
2049	 63.31	0	2280026..2281366	-	446	152970631	-	KPN_02082	-	gluconate dehydrogenase cytochrome c subunit, putative
2050	 61.01	0	2281377..2283161	-	594	152970632	-	KPN_02083	-	monooxygenase, FAD-binding; glucose-methanol-choline oxidoreductase
2051	 60.96	0	2283164..2283916	-	250	152970633	-	KPN_02084	-	hypothetical protein
2052	 61.83	0	2284421..2284792	+	123	152970634	-	KPN_02085	-	putative glyoxalase/bleomycin resistance protein/dioxygenase
2053	 64.05	+1	2284800..2285870	-	356	152970635	-	KPN_02086	-	putative ABC transporter
2054	 61.81	0	2285863..2287632	-	589	152970636	-	KPN_02087	-	putative inner membrane permease of ABC transporter
2055	 53.44	0	2287706..2288794	-	362	152970637	-	KPN_02088	-	putative ABC transporter periplasmic binding protein
2056	 66.94	+1	2289097..2290176	+	359	152970638	-	KPN_02089	-	hypothetical protein
2057	 62.72	0	2290424..2292574	+	716	152970639	-	KPN_02090	-	formate dehydrogenase H, selenopolypeptide subunit
2058	 66.32	+1	2292617..2293774	-	385	152970640	-	KPN_02091	-	putative metal-dependent amidase/aminoacylase/carboxypeptidase
2059	 64.33	+1	2294070..2295269	+	399	152970641	-	KPN_02092	-	putative transporter protein
2060	 56.09	0	2295385..2295819	+	144	152970642	-	KPN_02093	-	glyoxalase I, nickel isomerase
2061	 54.18	0	2296385..2297617	+	410	152970643	-	KPN_02094	-	putative sugar transport protein
2062	 59.80	0	2297654..2298046	+	130	152970644	-	KPN_02095	-	glyoxalase I, nickel isomerase
2063	 53.01	0	2298174..2298788	-	204	152970645	-	KPN_02096	-	hypothetical protein
2064	 61.83	0	2299060..2299782	-	240	152970646	-	KPN_02097	-	putative ABC transporter
2065	 61.18	0	2299769..2300533	-	254	152970647	-	KPN_02098	-	amino acid ABC transporter
2066	 56.50	0	2300597..2301334	-	245	152970648	-	KPN_02099	-	amino acid-binding protein
2067	 63.23	0	2301457..2302359	-	300	152970649	-	KPN_02100	-	putative transcriptional regulator
2068	 62.27	0	2302356..2303333	-	325	152970650	-	KPN_02101	-	iron ABC transporter substrate-binding protein
2069	 68.28	+1	2303323..2304375	-	350	152970651	-	KPN_02102	-	iron ABC transporter permease
2070	 69.79	+2	2304372..2305397	-	341	152970652	-	KPN_02103	-	ferric enterobactin (enterochelin) transport
2071	 62.17	0	2305394..2306215	-	273	152970653	-	KPN_02104	-	ATP-binding component of ferric enterobactin transport
2072	 58.66	0	2306721..2308793	+	690	152970654	-	KPN_02105	-	TonB-dependent receptor
2073	 65.76	+1	2308902..2309675	-	257	152970655	-	KPN_02106	-	putative ABC-type transport system, ATPase component
2074	 66.16	+1	2309669..2310664	-	331	152970656	-	KPN_02107	-	ABC-type transport system, permease component
2075	 62.91	0	2310645..2311682	-	345	152970657	-	KPN_02108	-	taurine ABC transporter periplasmic substrate-binding protein
2076	 65.07	+1	2311679..2312617	-	312	152970658	-	KPN_02109	-	putatove ABC-type transport systems, periplasmic components
2077	 66.06	+1	2312647..2313798	-	383	152970659	-	KPN_02110	-	putative acyl-CoA dehydrogenases
2078	 65.56	+1	2313795..2314880	-	361	152970660	-	KPN_02111	-	putative coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
2079	 66.33	+1	2315025..2315918	-	297	152970661	-	KPN_02112	-	transcriptional regulator LysR
2080	 61.36	0	2316025..2316627	+	200	152970662	-	KPN_02113	-	putataive cysteine dioxygenase type I
2081	 68.44	+1	2316633..2318213	+	526	152970663	-	KPN_02114	-	putative rhodanese-related sulfurtransferase
2082	 63.77	+1	2318226..2318951	-	241	152970664	-	KPN_02115	-	hypothetical protein
2083	 68.00	+1	2319054..2320250	-	398	152970665	mhpT	KPN_02116	-	putative 3-hydroxyphenylpropionic transporter MhpT
2084	 63.62	0	2320326..2321342	-	338	152970666	mhpE	KPN_02117	-	4-hydroxy-2-ketovalerate aldolase
2085	 63.20	0	2321339..2322289	-	316	152970667	mhpF	KPN_02118	-	acetaldehyde dehydrogenase
2086	 64.81	+1	2322282..2323091	-	269	152970668	mhpD	KPN_02119	-	2-keto-4-pentenoate hydratase
2087	 61.94	0	2323099..2323965	-	288	152970669	mhpC	KPN_02120	-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
2088	 65.71	+1	2323983..2324927	-	314	152970670	mhpB	KPN_02121	-	3-(2,3-dihydroxyphenyl)propionate dioxygenase
2089	 63.66	0	2324929..2326593	-	554	152970671	mhpA	KPN_02122	-	3-(3-hydroxyphenyl)propionate hydroxylase
2090	 63.84	+1	2326771..2327583	+	270	152970672	mhpR	KPN_02123	-	DNA-binding transcriptional activator MhpR
2091	 62.23	0	2327675..2328733	+	352	152970673	-	KPN_02124	-	putative ABC-transporter periplasmic-binding component
2092	 67.96	+1	2328723..2329730	+	335	152970674	-	KPN_02125	-	putative ABC transporter permease protein
2093	 68.67	+1	2329727..2330476	+	249	152970675	-	KPN_02126	-	putative ABC transporter ATP-binding protein
2094	 66.67	+1	2330460..2331203	-	247	152970676	-	KPN_02127	-	molybdate ABC transporter periplasmic substrate-binding protein
2095	 64.28	+1	2331260..2332096	-	278	152970677	-	KPN_02128	-	shikimate 5-dehydrogenase
2096	 62.89	0	2332112..2333434	-	440	152970678	-	KPN_02129	-	major facilitator superfamily permease
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.