IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1954	 61.78	0	2179007..2181031	+	674	152970536	ydhK	KPN_01984	-	hypothetical protein
1955	 62.45	0	2181024..2181545	-	173	152970537	sodC	KPN_01985	-	superoxide dismutase
1956	 58.75	0	2181615..2182511	-	298	152970538	ydhF	KPN_01986	-	putative oxidoreductase, NAD(P)-linked
1957	 58.02	0	2182560..2182802	-	80	152970539	ydhL	KPN_01987	-	hypothetical protein
1958	 58.33	0	2182942..2183541	+	199	152970540	ydhM	KPN_01988	-	transcriptional regulator
1959	 61.29	0	2183595..2184692	+	365	152970541	nemA	KPN_01989	-	N-ethylmaleimide reductase
1960	 58.58	0	2184771..2185178	+	135	152970542	gloA	KPN_01990	-	glyoxalase I
1961	 59.72	0	2185316..2185963	+	215	152970543	rnt	KPN_01991	-	ribonuclease T
1962	 56.03	0	2186011..2186358	-	115	152970544	ydhD	KPN_01992	-	hypothetical protein
1963	 57.41	0	2186816..2187571	+	251	152970545	ydhO	KPN_01993	-	putative lipoprotein
1964	 56.70	0	2188481..2189062	+	193	152970546	sodB	KPN_01994	-	superoxide dismutase
1965	 61.18	0	2189124..2190290	-	388	152970547	ydhP	KPN_01995	-	putative transport protein
1966	 56.82	0	2190842..2191867	+	341	152970548	purR	KPN_01996	-	DNA-binding transcriptional repressor PurR
1967	 60.20	0	2191794..2192798	-	334	152970549	ydhB	KPN_01997	-	putative DNA-binding transcriptional regulator
1968	 62.06	0	2192857..2194092	+	411	152970550	ydhC	KPN_01998	-	inner membrane transport protein YdhC
1969	 54.35	0	2194535..2195533	+	332	152970551	cfa	KPN_01999	-	cyclopropane fatty acyl phospholipid synthase
1970	 52.52	0	2195570..2196205	-	211	152970552	ribC	KPN_02000	-	riboflavin synthase subunit alpha
1971	 60.12	0	2196435..2197808	+	457	152970553	norM	KPN_02001	-	multidrug efflux protein
1972	 55.78	0	2197984..2198277	+	97	152970554	asr	KPN_02002	-	acid shock protein precursor
1973	 48.81	-1	2198342..2198425	+	27	152970555	-	KPN_02003	-	hypothetical protein
1974	 60.45	0	2198418..2198996	-	192	152970556	-	KPN_02004	-	hypothetical protein
1975	 63.02	0	2201182..2201922	-	246	152970557	-	KPN_02008	-	short chain dehydrogenase
1976	 63.32	0	2202033..2202959	+	308	152970558	-	KPN_02009	-	putative ARAC-type regulatory protein
1977	 62.75	0	2202956..2203924	-	322	152970559	-	KPN_02010	-	LysR family transcriptional regulator
1978	 62.98	0	2203996..2204511	+	171	152970560	-	KPN_02011	-	hypothetical protein
1979	 54.45	0	2206618..2207190	+	190	152970561	-	KPN_02012	-	hypothetical protein
1980	 51.43	-1	2207274..2207483	+	69	152970562	-	KPN_02013	-	hypothetical protein
1981	 55.50	0	2207796..2208431	-	211	152970563	-	KPN_02014	-	putative carbonic anhydrase
1982	 62.54	0	2208681..2209310	+	209	152970564	-	KPN_02015	-	amino acid exporter
1983	 59.80	0	2209315..2210013	-	232	152970565	-	KPN_02016	-	putative DEOR-type transcriptional regulator
1984	 59.90	0	2210176..2210559	+	127	152970566	-	KPN_02017	-	glyoxalase I, nickel isomerase
1985	 61.90	0	2210687..2211274	+	195	152970567	-	KPN_02018	-	putative chloramphenicol acetyltransferase
1986	 59.25	0	2211679..2213322	+	547	152970568	-	KPN_02019	-	putative oligopeptide ABC transporter, oligopeptide-binding protein
1987	 60.62	0	2213366..2214325	+	319	152970569	-	KPN_02020	-	oligopeptide ABC transporter, permease
1988	 63.71	+1	2214325..2215272	+	315	152970570	-	KPN_02021	-	oligopeptide ABC transporter, permease protein
1989	 66.16	+1	2215269..2216249	+	326	152970571	-	KPN_02022	-	putative ABC transport system ATP-binding protein
1990	 62.45	0	2216246..2217217	+	323	152970572	-	KPN_02023	-	ATP-binding protein of oligopeptide ABC transport system
1991	 56.82	0	2217583..2218110	+	175	152970573	-	KPN_02024	-	hypothetical protein
1992	 57.26	0	2218228..2218716	+	162	152970574	-	KPN_02025	-	hypothetical protein
1993	 62.18	0	2219182..2220651	-	489	152970575	-	KPN_02026	-	putative transport protein
1994	 59.29	0	2220831..2221766	+	311	152970576	-	KPN_02027	-	LysR family transcriptional regulator
1995	 50.76	-1	2221915..2222907	-	330	152970577	-	KPN_02028	-	putative NADPH:quinone reductase and related Zn-dependent oxidoreductases
1996	 49.94	-1	2223057..2223947	-	296	152970578	-	KPN_02029	-	LysR family transcriptional regulator
1997	 47.71	-1	2224338..2224664	+	108	152970579	-	KPN_02030	-	hypothetical protein
1998	 59.24	0	2225107..2226102	-	331	152970580	-	KPN_02031	-	putative dioxygenase
1999	 66.95	+1	2226117..2227526	-	469	152970581	-	KPN_02032	-	amidohydrolase
2000	 61.25	0	2227547..2228488	-	313	152970582	-	KPN_02033	-	ABC transporter, periplasmic binding component-related protein
2001	 58.33	0	2228831..2229730	-	299	152970583	-	KPN_02034	-	LysR family transcriptional regulator
2002	 61.07	0	2230013..2230906	+	297	152970584	-	KPN_02035	-	putative vanillate O-demethylase oxidoreductase
2003	 68.46	+1	2230918..2232201	+	427	152970585	-	KPN_02036	-	putative cytosine deaminase
2004	 61.46	0	2232191..2232670	+	159	152970586	-	KPN_02037	-	putative endoribonuclease
2005	 63.95	+1	2232667..2233548	+	293	152970587	-	KPN_02038	-	putative creatininase
2006	 60.06	0	2233548..2234531	+	327	152970588	-	KPN_02039	-	ABC transporter periplasmic-binding protein
2007	 63.78	+1	2234528..2235358	+	276	152970589	-	KPN_02040	-	putative ABC transporter, ATP-binding protein
2008	 61.03	0	2235360..2236175	+	271	152970590	-	KPN_02041	-	putative ABC transporter, ATP-binding protein
2009	 63.92	+1	2236202..2237623	+	473	152970591	-	KPN_02042	-	putative FAD/FMN-containing dehydrogenases
2010	 49.48	-1	2238008..2238484	+	158	152970592	-	KPN_02043	-	hypothetical protein
2011	 46.62	-1	2238486..2238914	+	142	152970593	-	KPN_02044	-	hypothetical protein
2012	 43.45	-2	2238911..2239246	+	111	152970594	-	KPN_02045	-	hypothetical protein
2013	 60.89	0	2239337..2240704	-	455	152970595	-	KPN_02046	-	putative chromate transporter
2014	 62.40	0	2240673..2241632	-	319	152970596	-	KPN_02047	-	chromate resistance protein ChrB
2015	 65.65	+1	2241761..2242939	-	392	152970597	-	KPN_02048	-	hypothetical protein
2016	 60.24	0	2243141..2243389	-	82	152970598	-	KPN_02049	-	putative 4-oxalocrotonate tautomerase
2017	 49.73	-1	2245389..2246126	-	245	152970599	-	KPN_02050	-	putative enzyme
2018	 57.45	0	2246587..2246727	+	46	152970600	-	KPN_02051	-	hypothetical protein
2019	 62.60	0	2246772..2247656	-	294	152970601	-	KPN_02052	-	LysR family transcriptional regulator
2020	 64.12	+1	2247803..2248510	+	235	152970602	-	KPN_02053	-	putative acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
2021	 62.56	0	2248512..2249168	+	218	152970603	-	KPN_02054	-	putative acetyl-CoA:acetoacetyl-CoA transferase beta subunit
2022	 68.53	+1	2249178..2250359	+	393	152970604	-	KPN_02055	-	beta-ketothiolase
2023	 68.61	+1	2250371..2251294	+	307	152970605	-	KPN_02056	-	3-hydroxybutyryl-CoA dehydrogenase
2024	 64.98	+1	2252757..2253527	+	256	152970606	-	KPN_02057	-	3-hydroxybutyrate dehydrogenase
2025	 61.28	0	2253547..2254419	-	290	152970607	-	KPN_02058	-	LysR family transcriptional regulator
2026	 61.65	0	2254628..2255305	+	225	152970608	-	KPN_02059	-	acetolactate decarboxylase
2027	 63.33	0	2255315..2256994	+	559	152970609	-	KPN_02060	-	acetolactate synthase
2028	 60.05	0	2257018..2257788	+	256	152970610	-	KPN_02061	-	acetoin reductase
2029	 39.56	-2	2258183..2258824	+	213	152970611	-	KPN_02062	-	hypothetical protein
2030	 42.27	-2	2258953..2259489	-	178	152970612	-	KPN_02063	-	putative acetyl transferase
2031	 49.02	-1	2259565..2262681	-	1038	152970613	-	KPN_02064	-	acridine efflux pump
2032	 29.63	-2	2263833..2264183	-	116	152970614	-	KPN_02065	-	putative transport protein
2033	 46.48	-1	2264472..2265209	+	245	152970615	-	KPN_02066	-	response regulator
2034	 42.94	-2	2265206..2266267	+	353	152970616	-	KPN_02067	-	sensor histidine protein kinase (RstA regulator)
2035	 55.25	0	2267024..2268004	+	326	152970617	-	KPN_02068	-	transposase, IS4
2036	 46.34	-1	2268636..2269673	-	345	152970618	-	KPN_02069	-	L, D-carboxypeptidase A (in murein recycling)
2037	 47.66	-1	2269852..2270214	-	120	152970619	-	KPN_02070	-	TonB protein
2038	 44.87	-2	2270996..2271385	-	129	152970620	-	KPN_02071	-	putative enzyme
2039	 44.44	-2	2271730..2272206	-	158	152970621	-	KPN_02072	-	putative acyltransferase
2040	 68.56	+1	2273410..2274252	-	280	152970622	ccmH	KPN_02073	-	subunit of heme lyase
2041	 61.22	0	2274249..2274707	-	152	152970623	ccmH	KPN_02074	-	subunit of heme lyase
2042	 63.42	0	2274707..2275261	-	184	152970624	ccmG	KPN_02075	-	heme lyase/disulfide oxidoreductase (thiol:disulfide interchange protein)
2043	 64.67	+1	2275258..2277210	-	650	152970625	ccmF	KPN_02076	-	cytochrome c-type biogenesis protein
2044	 62.31	0	2277207..2277665	-	152	152970626	ccmE	KPN_02077	-	cytochrome c biogenesis
2045	 67.53	+1	2277649..2277879	-	76	152970627	ccmD	KPN_02078	-	heme exporter protein C
2046	 65.58	+1	2277876..2278613	-	245	152970628	ccmC	KPN_02079	-	heme ABC transporter membrane protein
2047	 69.24	+1	2278663..2279322	-	219	152970629	ccmB	KPN_02080	-	heme ABC transporter membrane protein
2048	 68.91	+1	2279319..2279942	-	207	152970630	ccmA	KPN_02081	-	cytochrome c biogenesis protein CcmA
2049	 63.31	0	2280026..2281366	-	446	152970631	-	KPN_02082	-	gluconate dehydrogenase cytochrome c subunit, putative
2050	 61.01	0	2281377..2283161	-	594	152970632	-	KPN_02083	-	monooxygenase, FAD-binding; glucose-methanol-choline oxidoreductase
2051	 60.96	0	2283164..2283916	-	250	152970633	-	KPN_02084	-	hypothetical protein
2052	 61.83	0	2284421..2284792	+	123	152970634	-	KPN_02085	-	putative glyoxalase/bleomycin resistance protein/dioxygenase
2053	 64.05	+1	2284800..2285870	-	356	152970635	-	KPN_02086	-	putative ABC transporter
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.