IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1739	 61.83	0	1951582..1951767	+	61	152970321	-	KPN_01769	-	hypothetical protein
1740	 67.31	+1	1951764..1953161	+	465	152970322	-	KPN_01770	-	amidase
1741	 64.34	+1	1953158..1953544	+	128	152970323	-	KPN_01771	-	hypothetical protein
1742	 49.41	-1	1953630..1954052	+	140	152970324	-	KPN_01772	-	acyltransferase domain-containing protein
1743	 51.47	-1	1954090..1955208	-	372	152970325	-	KPN_01773	-	aspartate-semialdehyde dehydrogenase
1744	 60.39	0	1955529..1956086	+	185	152970326	-	KPN_01774	-	putative transcriptional regulator
1745	 62.93	0	1956070..1957113	+	347	152970327	-	KPN_01775	-	multidrug resistance secretion protein
1746	 62.38	0	1957110..1958672	+	520	152970328	-	KPN_01776	-	multidrug resistance protein membrane translocase
1747	 64.78	+1	1958692..1959966	+	424	152970329	-	KPN_01777	-	putative beta-ketoacyl synthase
1748	 45.26	-2	1960261..1960671	+	136	152970330	-	KPN_01778	-	hypothetical protein
1749	 55.25	0	1961234..1962214	+	326	152970331	-	KPN_01779	-	putative transposase, IS4
1750	 51.44	-1	1962970..1963770	-	266	152970332	-	KPN_01780	-	putative ARAC-type regulatory protein
1751	 51.10	-1	1963863..1964588	+	241	152970333	-	KPN_01781	-	glutamine amidotransferase
1752	 46.80	-1	1964723..1965472	-	249	152970334	-	KPN_01782	-	putative deoxygluconate dehydrogenase
1753	 45.69	-2	1965792..1966301	+	169	152970335	-	KPN_01783	-	putative isochorismatase hydrolase
1754	 47.83	-1	1966562..1967182	-	206	152970336	-	KPN_01784	-	phosphoglycerate mutase
1755	 57.81	0	1967829..1968596	-	255	152970337	-	KPN_01785	-	putative ARAC-type regulatory protein
1756	 57.95	0	1968706..1969497	+	263	152970338	-	KPN_01786	-	hypothetical protein
1757	 63.02	0	1969586..1970518	-	310	152970339	-	KPN_01787	-	putative polysaccharide deacetylase
1758	 64.11	+1	1970531..1971274	-	247	152970340	-	KPN_01788	-	putative hydantoin racemase
1759	 63.18	0	1971274..1971990	-	238	152970341	-	KPN_01789	-	transcriptional regulator
1760	 59.85	0	1972135..1973631	+	498	152970342	-	KPN_01790	-	putative allantoin permease
1761	 61.78	0	1973733..1975043	+	436	152970343	-	KPN_01791	-	guanine deaminase
1762	 45.15	-2	1975138..1975797	-	219	152970344	-	KPN_01792	-	hypothetical protein
1763	 52.44	0	1975788..1977488	-	566	152970345	-	KPN_01793	-	hypothetical protein
1764	 50.91	-1	1978849..1980105	-	418	152970346	-	KPN_01794	-	hypothetical protein
1765	 62.54	0	1980504..1981544	+	346	152970347	-	KPN_01795	-	putative periplasmic binding protein/LacI transcriptional regulator
1766	 62.31	0	1981719..1982660	+	313	152970348	-	KPN_01796	-	putative epimerase/isomerase
1767	 63.34	0	1982674..1983846	+	390	152970349	-	KPN_01797	-	oxidoreductase
1768	 61.96	0	1983884..1985008	-	374	152970350	-	KPN_01798	-	hypothetical protein
1769	 63.07	0	1985425..1986120	+	231	152970351	-	KPN_01799	-	putative ABC transporter
1770	 69.00	+1	1986117..1986845	+	242	152970352	-	KPN_01800	-	putative ABC transporter
1771	 63.97	+1	1986842..1987582	+	246	152970353	-	KPN_01801	-	binding-protein dependent transport system inner membrane protein
1772	 60.10	0	1988849..1990234	+	461	152970354	-	KPN_01802	-	diaminobutyrate--2-oxoglutarate aminotransferase
1773	 61.71	0	1990253..1991725	+	490	152970355	-	KPN_01803	-	8-amino-7-oxononanoate synthase
1774	 65.32	+1	1991919..1992812	+	297	152970356	-	KPN_01804	-	LysR family NADH dehydrogenase transcriptional regulator
1775	 66.24	+1	1993052..1994212	-	386	152970357	-	KPN_01805	-	putative cytochrome c biogenesis protein
1776	 65.55	+1	1994345..1995688	-	447	152970358	-	KPN_01806	-	putative signal transduction histidine kinase
1777	 61.13	0	1995685..1996425	-	246	152970359	-	KPN_01807	-	putative transcriptional regulatory protein, C-terminal
1778	 62.05	0	1996512..1997528	-	338	152970360	-	KPN_01808	-	putative epoxide hydrolase protein
1779	 57.75	0	1997748..1998767	+	339	152970361	-	KPN_01809	-	proline dipeptidase
1780	 61.17	0	1999030..1999956	+	308	152970362	-	KPN_01810	-	pyrroloquinoline quinone biosynthesis protein PqqB
1781	 61.24	0	1999950..2000705	+	251	152970363	-	KPN_01811	-	pyrroloquinoline quinone biosynthesis protein PqqC
1782	 61.50	0	2000973..2002115	+	380	152970364	-	KPN_01812	-	pyrroloquinoline quinone biosynthesis protein PqqE
1783	 68.46	+1	2002115..2004400	+	761	152970365	-	KPN_01813	-	pyrroloquinolinquinone synthase F
1784	 65.18	+1	2004397..2005134	-	245	152970366	-	KPN_01814	-	glutamine amidotransferase
1785	 59.04	0	2005247..2007214	-	655	152970367	-	KPN_01815	-	cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2
1786	 60.59	0	2007356..2007832	-	158	152970368	-	KPN_01816	-	hypothetical protein
1787	 58.16	0	2007842..2008276	-	144	152970369	-	KPN_01817	-	hypothetical protein
1788	 60.34	0	2008376..2009308	+	310	152970370	-	KPN_01818	-	LysR family transcriptional regulator
1789	 62.81	0	2009577..2011754	+	725	152970371	-	KPN_01819	-	putative catalase (hydroperoxidase I)
1790	 62.01	0	2011789..2012775	-	328	152970372	-	KPN_01820	-	putative ATPase
1791	 61.71	0	2012948..2013592	-	214	152970373	-	KPN_01821	-	putative Mg(2+) transport ATPase
1792	 59.84	0	2014216..2015622	+	468	152970374	-	KPN_01822	-	putative transport protein
1793	 52.70	0	2015663..2015977	-	104	152970375	-	KPN_01823	-	putative phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
1794	 58.16	0	2016214..2017095	-	293	152970376	-	KPN_01824	-	transcriptional regulator LysR
1795	 62.19	0	2017245..2019545	-	766	152970377	-	KPN_01825	-	putative anaerobic dehydrogenases, typically selenocysteine-containing
1796	 58.71	0	2019861..2020778	-	305	152970378	-	KPN_01826	-	hypothetical protein
1797	 63.27	0	2021028..2021792	-	254	152970379	-	KPN_01827	-	putative cation efflux system
1798	 48.09	-1	2022001..2022183	+	60	152970380	-	KPN_01828	-	hypothetical protein
1799	 63.76	+1	2022173..2022859	+	228	152970381	-	KPN_01829	-	hypothetical protein
1800	 64.71	+1	2022861..2023730	-	289	152970382	-	KPN_01830	-	hypothetical protein
1801	 57.64	0	2023835..2024266	-	143	152970383	-	KPN_01831	-	osmotically inducible protein
1802	 60.54	0	2024380..2024526	-	48	152970384	-	KPN_01832	-	hypothetical protein
1803	 56.86	0	2024542..2024949	-	135	152970385	-	KPN_01833	-	hypothetical protein
1804	 49.40	-1	2025091..2025594	+	167	152970386	-	KPN_01834	-	hypothetical protein
1805	 44.74	-2	2025603..2026049	+	148	152970387	-	KPN_01835	-	hypothetical protein
1806	 43.75	-2	2026061..2026156	-	31	152970388	-	KPN_01836	-	hypothetical protein
1807	 62.75	0	2026368..2027363	+	331	152970389	-	KPN_01837	-	putative oxidoreductase
1808	 60.70	0	2027360..2028985	-	541	152970390	-	KPN_01838	-	putative glycosidase
1809	 65.03	+1	2029025..2029207	-	60	152970391	-	KPN_01839	-	PTS family enzyme IIBC component, cellobiose/salicin/arbutin-specific
1810	 53.25	0	2029224..2029730	-	168	152970392	-	KPN_01840	-	hypothetical protein
1811	 54.30	0	2030335..2030520	-	61	152970393	-	KPN_01841	-	hypothetical protein
1812	 59.67	0	2031176..2032090	+	304	152970394	-	KPN_01842	-	putative oxidoreductase
1813	 50.00	-1	2032287..2032532	+	81	152970395	-	KPN_01843	-	hypothetical protein
1814	 64.54	+1	2032600..2033493	-	297	152970396	-	KPN_01844	-	LysR family transcriptional regulator
1815	 59.27	0	2033607..2034458	+	283	152970397	-	KPN_01845	-	hypothetical protein
1816	 51.06	-1	2034636..2034776	+	46	152970398	rpsV	KPN_01846	-	30S ribosomal subunit S22
1817	 58.48	0	2034958..2036655	+	565	152970399	sfcA	KPN_01847	-	malate dehydrogenase
1818	 50.72	-1	2036839..2037534	+	231	152970400	-	KPN_01848	-	putative glycosyltransferase
1819	 55.90	0	2037531..2038217	+	228	152970401	-	KPN_01849	-	hypothetical protein
1820	 64.63	+1	2038579..2040294	+	571	152970402	-	KPN_01850	-	putative ATP-binding component of a transport system
1821	 61.11	0	2040331..2041284	-	317	152970403	-	KPN_01851	-	putative regulatory protein  MarR
1822	 58.50	0	2041458..2042057	-	199	152970404	-	KPN_01852	-	inorganic pyrophosphatase
1823	 60.63	0	2042310..2043320	+	336	152970405	adhP	KPN_01853	-	alcohol dehydrogenase
1824	 60.75	0	2043490..2045112	+	540	152970406	-	KPN_01854	-	nickel ABC transporter periplasmic substrate-binding protein
1825	 63.28	0	2045123..2046067	+	314	152970407	-	KPN_01855	-	peptide ABC transporter membrane protein
1826	 67.84	+1	2046064..2046912	+	282	152970408	-	KPN_01856	-	putative ABC transport system permease protein
1827	 64.25	+1	2046909..2048525	+	538	152970409	-	KPN_01857	-	putative ATP-binding component of a transport system
1828	 65.35	+1	2048525..2049511	+	328	152970410	-	KPN_01858	-	putative monooxygenase
1829	 65.66	+1	2049521..2050612	+	363	152970411	-	KPN_01859	-	hypothetical protein
1830	 60.87	0	2050619..2051773	-	384	152970412	-	KPN_01860	-	protein AraJ
1831	 62.36	0	2052038..2052478	+	146	152970413	-	KPN_01861	-	putative glyoxalase/bleomycin resistance protein/dioxygenase
1832	 57.94	0	2052540..2053364	+	274	152970414	-	KPN_01862	-	hypothetical protein
1833	 43.29	-2	2053498..2053728	+	76	152970415	-	KPN_01863	-	hypothetical protein
1834	 40.67	-2	2053725..2054051	+	108	152970416	-	KPN_01864	-	hypothetical protein
1835	 52.21	0	2054104..2054760	-	218	152970417	fdnI	KPN_01865	-	formate dehydrogenase-N subunit gamma
1836	 59.44	0	2054753..2055637	-	294	152970418	fdnH	KPN_01866	-	formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible
1837	 58.50	0	2055649..2058060	-	803	152970419	fdnG	KPN_01867	-	hypothetical protein
1838	 61.09	0	2058922..2059800	+	292	152970420	yddG	KPN_01868	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.