IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1686	 59.31	0	1896346..1897527	-	393	152970268	-	KPN_01716	-	putative dehydrogenase
1687	 57.24	0	1897574..1898560	-	328	152970269	-	KPN_01717	-	putative aldo/keto reductase
1688	 55.82	0	1898819..1899685	+	288	152970270	-	KPN_01718	-	LysR family transcriptional regulator
1689	 41.03	-2	1899754..1899870	+	38	152970271	-	KPN_01719	-	hypothetical protein
1690	 41.04	-2	1899867..1900385	-	172	152970272	-	KPN_01720	-	hypothetical protein
1691	 55.32	0	1900513..1901763	-	416	152970273	pgtA	KPN_01721	-	phosphoglycerate transport activator
1692	 56.67	0	1901753..1903762	-	669	152970274	pgtB	KPN_01722	-	phosphoglycerate transporter
1693	 57.24	0	1903759..1904988	-	409	152970275	pgtC	KPN_01723	-	phosphoglycerate transporter
1694	 55.23	0	1905466..1906776	+	436	152970276	pgtP	KPN_01724	-	phosphoglycerate transporter
1695	 49.56	-1	1906913..1907362	-	149	152970277	ygaU	KPN_01725	-	hypothetical protein
1696	 53.39	0	1907769..1908152	-	127	152970278	-	KPN_01726	-	hypothetical protein
1697	 56.59	0	1908742..1909386	-	214	152970279	-	KPN_01727	-	hypothetical protein
1698	 54.39	0	1909386..1910240	-	284	152970280	-	KPN_01728	-	hypothetical protein
1699	 58.76	0	1910258..1911130	+	290	152970281	-	KPN_01729	-	carbohydrate kinase
1700	 53.67	0	1911132..1912085	-	317	152970282	-	KPN_01730	-	putative ABC transporter, nucleotide binding/ATPase protein
1701	 59.53	0	1912432..1913454	+	340	152970283	-	KPN_01731	-	periplasmic binding protein/LacI transcriptional regulator
1702	 59.26	0	1913799..1914581	+	260	152970284	-	KPN_01732	-	putative ABC transporter
1703	 59.84	0	1914621..1915601	+	326	152970285	-	KPN_01733	-	putative ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
1704	 58.80	0	1915605..1916684	+	359	152970286	-	KPN_01734	-	putative hydrolase
1705	 61.85	0	1917454..1918596	+	380	152970287	-	KPN_01735	-	putative acetylornithine deacetylase
1706	 50.55	-1	1919242..1919967	-	241	152970288	-	KPN_01736	-	putative enzyme
1707	 52.65	0	1920179..1921084	+	301	152970289	-	KPN_01737	-	LysR family transcriptional regulator
1708	 48.62	-1	1921126..1922028	-	300	152970290	-	KPN_01738	-	LysR family transcriptional regulator
1709	 48.47	-1	1922132..1923340	+	402	152970291	-	KPN_01739	-	MFS family transporter
1710	 55.23	0	1923398..1924018	-	206	152970292	-	KPN_01740	-	amino acid exporter (homoserine, HSL)
1711	 52.03	-1	1924224..1925330	-	368	152970293	-	KPN_01741	-	putative phosphotransferase system, EIIC
1712	 46.15	-2	1925373..1925684	-	103	152970294	-	KPN_01742	-	PTS family enzyme IIB, fructose-mannitol-specific
1713	 45.01	-2	1925741..1926211	-	156	152970295	-	KPN_01743	-	PTS family enzyme IIA/ enzyme IIBC
1714	 46.30	-1	1926328..1926975	-	215	152970296	-	KPN_01744	-	allulose-6-phosphate 3-epimerase
1715	 52.57	0	1927029..1928291	-	420	152970297	-	KPN_01745	-	ascorbate-specific PTS system enzyme IIC
1716	 38.58	-2	1928322..1928588	-	88	152970298	-	KPN_01746	-	PTS family protein II component
1717	 45.43	-2	1928600..1929037	-	145	152970299	-	KPN_01747	-	PTS family enzyme IIA, mannitol-specific, cryptic
1718	 52.07	-1	1929246..1930307	+	353	152970300	-	KPN_01748	-	putative periplasmic binding protein/LacI transcriptional regulator
1719	 54.73	0	1930418..1930660	-	80	152970301	-	KPN_01749	-	hypothetical protein
1720	 59.58	0	1930853..1932151	+	432	152970302	-	KPN_01750	-	major facilitator superfamily permease
1721	 57.54	0	1932189..1932725	-	178	152970303	-	KPN_01751	-	putative acetyltransferase
1722	 56.82	0	1933365..1933943	+	192	152970304	-	KPN_01752	-	TetR/AcrR family transcriptional regulator
1723	 57.13	0	1933919..1935019	-	366	152970305	-	KPN_01753	-	putative ABC-type spermidine/putrescine transport systems
1724	 61.09	0	1935221..1936135	+	304	152970306	-	KPN_01754	-	hypothetical protein
1725	 59.94	0	1936176..1937408	-	410	152970307	-	KPN_01755	-	putative transporter
1726	 61.82	0	1937684..1939291	+	535	152970308	-	KPN_01756	-	hypothetical protein
1727	 64.21	+1	1939399..1940499	+	366	152970309	-	KPN_01757	-	putative NADH:flavin oxidoreductase/NADH oxidase
1728	 55.83	0	1940731..1941219	-	162	152970310	-	KPN_01758	-	putative cell envelope integrity inner membrane protein TolA
1729	 60.76	0	1941329..1942225	-	298	152970311	-	KPN_01759	-	LysR family transcriptional regulator
1730	 64.42	+1	1942394..1943371	+	325	152970312	-	KPN_01760	-	putative dehydrogenase
1731	 68.57	+1	1943404..1944663	-	419	152970313	-	KPN_01761	-	allantoate amidohydrolase
1732	 63.29	0	1944660..1945901	-	413	152970314	-	KPN_01762	-	Serine-pyruvate aminotransferase/ aspartate aminotransferase
1733	 59.76	0	1945917..1946654	-	245	152970315	-	KPN_01763	-	ATP-binding component of histidine transport
1734	 60.88	0	1946635..1947291	-	218	152970316	-	KPN_01764	-	amino acid ABC transporter membrane protein
1735	 62.31	0	1947291..1947956	-	221	152970317	-	KPN_01765	-	glutamine ABC transporter permease component
1736	 61.32	0	1947966..1948751	-	261	152970318	-	KPN_01766	-	cysteine ABC transporter periplasmic substrate binding protein
1737	 62.62	0	1948966..1949805	-	279	152970319	-	KPN_01767	-	putative sugar isomerase
1738	 68.30	+1	1949985..1951571	+	528	152970320	-	KPN_01768	-	gamma-glutamyltranspeptidase
1739	 61.83	0	1951582..1951767	+	61	152970321	-	KPN_01769	-	hypothetical protein
1740	 67.31	+1	1951764..1953161	+	465	152970322	-	KPN_01770	-	amidase
1741	 64.34	+1	1953158..1953544	+	128	152970323	-	KPN_01771	-	hypothetical protein
1742	 49.41	-1	1953630..1954052	+	140	152970324	-	KPN_01772	-	acyltransferase domain-containing protein
1743	 51.47	-1	1954090..1955208	-	372	152970325	-	KPN_01773	-	aspartate-semialdehyde dehydrogenase
1744	 60.39	0	1955529..1956086	+	185	152970326	-	KPN_01774	-	putative transcriptional regulator
1745	 62.93	0	1956070..1957113	+	347	152970327	-	KPN_01775	-	multidrug resistance secretion protein
1746	 62.38	0	1957110..1958672	+	520	152970328	-	KPN_01776	-	multidrug resistance protein membrane translocase
1747	 64.78	+1	1958692..1959966	+	424	152970329	-	KPN_01777	-	putative beta-ketoacyl synthase
1748	 45.26	-2	1960261..1960671	+	136	152970330	-	KPN_01778	-	hypothetical protein
1749	 55.25	0	1961234..1962214	+	326	152970331	-	KPN_01779	-	putative transposase, IS4
1750	 51.44	-1	1962970..1963770	-	266	152970332	-	KPN_01780	-	putative ARAC-type regulatory protein
1751	 51.10	-1	1963863..1964588	+	241	152970333	-	KPN_01781	-	glutamine amidotransferase
1752	 46.80	-1	1964723..1965472	-	249	152970334	-	KPN_01782	-	putative deoxygluconate dehydrogenase
1753	 45.69	-2	1965792..1966301	+	169	152970335	-	KPN_01783	-	putative isochorismatase hydrolase
1754	 47.83	-1	1966562..1967182	-	206	152970336	-	KPN_01784	-	phosphoglycerate mutase
1755	 57.81	0	1967829..1968596	-	255	152970337	-	KPN_01785	-	putative ARAC-type regulatory protein
1756	 57.95	0	1968706..1969497	+	263	152970338	-	KPN_01786	-	hypothetical protein
1757	 63.02	0	1969586..1970518	-	310	152970339	-	KPN_01787	-	putative polysaccharide deacetylase
1758	 64.11	+1	1970531..1971274	-	247	152970340	-	KPN_01788	-	putative hydantoin racemase
1759	 63.18	0	1971274..1971990	-	238	152970341	-	KPN_01789	-	transcriptional regulator
1760	 59.85	0	1972135..1973631	+	498	152970342	-	KPN_01790	-	putative allantoin permease
1761	 61.78	0	1973733..1975043	+	436	152970343	-	KPN_01791	-	guanine deaminase
1762	 45.15	-2	1975138..1975797	-	219	152970344	-	KPN_01792	-	hypothetical protein
1763	 52.44	0	1975788..1977488	-	566	152970345	-	KPN_01793	-	hypothetical protein
1764	 50.91	-1	1978849..1980105	-	418	152970346	-	KPN_01794	-	hypothetical protein
1765	 62.54	0	1980504..1981544	+	346	152970347	-	KPN_01795	-	putative periplasmic binding protein/LacI transcriptional regulator
1766	 62.31	0	1981719..1982660	+	313	152970348	-	KPN_01796	-	putative epimerase/isomerase
1767	 63.34	0	1982674..1983846	+	390	152970349	-	KPN_01797	-	oxidoreductase
1768	 61.96	0	1983884..1985008	-	374	152970350	-	KPN_01798	-	hypothetical protein
1769	 63.07	0	1985425..1986120	+	231	152970351	-	KPN_01799	-	putative ABC transporter
1770	 69.00	+1	1986117..1986845	+	242	152970352	-	KPN_01800	-	putative ABC transporter
1771	 63.97	+1	1986842..1987582	+	246	152970353	-	KPN_01801	-	binding-protein dependent transport system inner membrane protein
1772	 60.10	0	1988849..1990234	+	461	152970354	-	KPN_01802	-	diaminobutyrate--2-oxoglutarate aminotransferase
1773	 61.71	0	1990253..1991725	+	490	152970355	-	KPN_01803	-	8-amino-7-oxononanoate synthase
1774	 65.32	+1	1991919..1992812	+	297	152970356	-	KPN_01804	-	LysR family NADH dehydrogenase transcriptional regulator
1775	 66.24	+1	1993052..1994212	-	386	152970357	-	KPN_01805	-	putative cytochrome c biogenesis protein
1776	 65.55	+1	1994345..1995688	-	447	152970358	-	KPN_01806	-	putative signal transduction histidine kinase
1777	 61.13	0	1995685..1996425	-	246	152970359	-	KPN_01807	-	putative transcriptional regulatory protein, C-terminal
1778	 62.05	0	1996512..1997528	-	338	152970360	-	KPN_01808	-	putative epoxide hydrolase protein
1779	 57.75	0	1997748..1998767	+	339	152970361	-	KPN_01809	-	proline dipeptidase
1780	 61.17	0	1999030..1999956	+	308	152970362	-	KPN_01810	-	pyrroloquinoline quinone biosynthesis protein PqqB
1781	 61.24	0	1999950..2000705	+	251	152970363	-	KPN_01811	-	pyrroloquinoline quinone biosynthesis protein PqqC
1782	 61.50	0	2000973..2002115	+	380	152970364	-	KPN_01812	-	pyrroloquinoline quinone biosynthesis protein PqqE
1783	 68.46	+1	2002115..2004400	+	761	152970365	-	KPN_01813	-	pyrroloquinolinquinone synthase F
1784	 65.18	+1	2004397..2005134	-	245	152970366	-	KPN_01814	-	glutamine amidotransferase
1785	 59.04	0	2005247..2007214	-	655	152970367	-	KPN_01815	-	cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.