IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1624	 57.99	0	1830123..1830929	-	268	152970206	-	KPN_01654	-	putative ABC-type metal ion transport system, periplasmic component/surface antigen
1625	 62.68	0	1830953..1831981	-	342	152970207	-	KPN_01655	-	putative 2OG-Fe(II) oxygenase
1626	 56.84	0	1832243..1832527	+	94	152970208	-	KPN_01656	-	hypothetical protein
1627	 58.33	0	1832549..1832860	+	103	152970209	-	KPN_01657	-	hypothetical protein
1628	 63.89	+1	1833037..1833792	+	251	152970210	-	KPN_01658	-	hypothetical protein
1629	 65.71	+1	1833802..1834746	-	314	152970211	-	KPN_01659	-	putative ARAC-type regulatory protein
1630	 64.81	+1	1834852..1836090	+	412	152970212	-	KPN_01660	-	MFS family transporter
1631	 67.17	+1	1836067..1837056	-	329	152970213	-	KPN_01661	-	putative oxidoreductase
1632	 64.61	+1	1838216..1839139	+	307	152970214	-	KPN_01662	-	transcriptional regulator LysR
1633	 64.76	+1	1839120..1840274	-	384	152970215	-	KPN_01663	-	putative flavoprotein monooxygenase
1634	 61.45	0	1840620..1841999	+	459	152970216	-	KPN_01664	-	guanine/xanthin permease
1635	 65.87	+1	1841977..1842477	+	166	152970217	-	KPN_01665	-	hypothetical protein
1636	 65.14	+1	1842474..1842800	+	108	152970218	-	KPN_01666	-	transthyretin-like protein
1637	 56.25	0	1843045..1843332	+	95	152970219	hipB	KPN_01667	-	DNA-binding transcriptional regulator HipB
1638	 61.45	0	1843332..1844654	+	440	152970220	hipA	KPN_01668	-	persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator
1639	 61.79	0	1844671..1845963	-	430	152970221	-	KPN_01669	-	hypothetical protein
1640	 63.18	0	1846105..1847109	-	334	152970222	-	KPN_01670	-	fimbrial protein
1641	 61.59	0	1847097..1849598	-	833	152970223	-	KPN_01671	-	putative fimbrial biogenesis outer membrane usher protein
1642	 56.32	0	1849614..1850309	-	231	152970224	-	KPN_01672	-	putative fimbrial chaperone
1643	 53.37	0	1850387..1850950	-	187	152970225	-	KPN_01673	-	putative fimbrial-like protein
1644	 56.19	0	1851912..1852694	-	260	152970226	-	KPN_01674	-	methionine aminopeptidase
1645	 50.68	-1	1852675..1852893	-	72	152970227	-	KPN_01675	-	hypothetical protein
1646	 48.59	-1	1853183..1853431	-	82	152970228	-	KPN_01676	-	hypothetical protein
1647	 54.11	0	1853728..1855383	+	551	152970229	-	KPN_01677	-	hypothetical protein
1648	 61.29	0	1855417..1856346	-	309	152970230	-	KPN_01678	-	putative oxidoreductase, Fe-S subunit
1649	 49.65	-1	1856540..1856680	-	46	152970231	-	KPN_01679	-	hypothetical protein
1650	 45.50	-2	1857361..1857804	-	147	152970232	-	KPN_01680	-	PTS family enzyme IIA/ FPr
1651	 55.34	0	1857794..1859179	-	461	152970233	-	KPN_01681	-	galactose-proton symport of transport system
1652	 58.01	0	1859985..1861313	-	442	152970234	-	KPN_01682	-	6-phospho-beta-glucosidase
1653	 57.34	0	1861325..1862857	-	510	152970235	-	KPN_01683	-	PTS family enzyme IIC/enzyme IIB
1654	 55.65	0	1863125..1863823	+	232	152970236	-	KPN_01684	-	putative transcriptional regulator
1655	 66.21	+1	1864684..1865568	+	294	152970237	-	KPN_01685	-	transcriptional regulator LysR
1656	 49.28	-1	1865586..1865723	-	45	152970238	-	KPN_01686	-	hypothetical protein
1657	 63.67	0	1865722..1866555	+	277	152970239	-	KPN_01687	-	putative dehydrogenase
1658	 53.11	0	1866638..1867795	-	385	152970240	-	KPN_01688	-	putative sugar diacid utilization regulator
1659	 64.03	+1	1867792..1868967	-	391	152970241	-	KPN_01689	-	glycerate kinase I
1660	 58.00	0	1868981..1870318	-	445	152970242	-	KPN_01690	-	putative general substrate transporter
1661	 61.66	0	1870428..1871306	-	292	152970243	-	KPN_01691	-	putative gluconolactonase
1662	 58.82	0	1871320..1872657	-	445	152970244	-	KPN_01692	-	major facilitator family transporter
1663	 62.72	0	1872793..1873983	-	396	152970245	-	KPN_01693	-	putative acetyl-CoA acetyltransferase
1664	 58.64	0	1873995..1874729	-	244	152970246	-	KPN_01694	-	3-ketoacyl-(acyl-carrier-protein) reductase
1665	 61.58	0	1874741..1876333	-	530	152970247	-	KPN_01695	-	bifunctional putative acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit
1666	 59.41	0	1876330..1877886	-	518	152970248	-	KPN_01696	-	putative acyl-CoA synthase
1667	 58.21	0	1878135..1878524	-	129	152970249	-	KPN_01697	-	putative glyoxalase/bleomycin resistance protein/dioxygenas
1668	 55.51	0	1878526..1879860	-	444	152970250	-	KPN_01698	-	fucose permease
1669	 60.56	0	1879897..1880796	-	299	152970251	-	KPN_01699	-	ribokinase
1670	 57.84	0	1880850..1881506	-	218	152970252	-	KPN_01700	-	allulose-6-phosphate 3-epimerase
1671	 59.93	0	1881649..1882449	-	266	152970253	-	KPN_01701	-	DeoR transcriptional regulator
1672	 57.47	0	1882812..1883561	+	249	152970254	-	KPN_01702	-	deoxyribose-phosphate aldolase
1673	 58.70	0	1883615..1885120	+	501	152970255	-	KPN_01703	-	putative pentose kinase
1674	 53.49	0	1885182..1885955	+	257	152970256	-	KPN_01704	-	DeoR transcriptional regulator
1675	 53.33	0	1886092..1887006	-	304	152970257	-	KPN_01705	-	putative ARAC-type regulatory protein
1676	 46.30	-1	1887187..1887456	-	89	152970258	-	KPN_01706	-	hypothetical protein
1677	 48.72	-1	1887456..1888553	+	365	152970259	-	KPN_01707	-	hypothetical protein
1678	 49.46	-1	1888753..1889124	+	123	152970260	-	KPN_01708	-	hypothetical protein
1679	 58.00	0	1889286..1890266	+	326	152970261	-	KPN_01709	-	putative helix-turn-helix, AraC type
1680	 53.02	0	1890345..1891355	+	336	152970262	-	KPN_01710	-	glyceraldehyde-3-phosphate dehydrogenase
1681	 54.02	0	1891603..1891689	+	28	152970263	-	KPN_01711	-	hypothetical protein
1682	 37.30	-2	1891992..1892117	+	41	152970264	-	KPN_01712	-	hypothetical protein
1683	 39.22	-2	1893631..1894275	-	214	152970265	-	KPN_01713	-	hypothetical protein
1684	 53.47	0	1894511..1894813	+	100	152970266	-	KPN_01714	-	hypothetical protein
1685	 51.58	-1	1894810..1895346	+	178	152970267	-	KPN_01715	-	hypothetical protein
1686	 59.31	0	1896346..1897527	-	393	152970268	-	KPN_01716	-	putative dehydrogenase
1687	 57.24	0	1897574..1898560	-	328	152970269	-	KPN_01717	-	putative aldo/keto reductase
1688	 55.82	0	1898819..1899685	+	288	152970270	-	KPN_01718	-	LysR family transcriptional regulator
1689	 41.03	-2	1899754..1899870	+	38	152970271	-	KPN_01719	-	hypothetical protein
1690	 41.04	-2	1899867..1900385	-	172	152970272	-	KPN_01720	-	hypothetical protein
1691	 55.32	0	1900513..1901763	-	416	152970273	pgtA	KPN_01721	-	phosphoglycerate transport activator
1692	 56.67	0	1901753..1903762	-	669	152970274	pgtB	KPN_01722	-	phosphoglycerate transporter
1693	 57.24	0	1903759..1904988	-	409	152970275	pgtC	KPN_01723	-	phosphoglycerate transporter
1694	 55.23	0	1905466..1906776	+	436	152970276	pgtP	KPN_01724	-	phosphoglycerate transporter
1695	 49.56	-1	1906913..1907362	-	149	152970277	ygaU	KPN_01725	-	hypothetical protein
1696	 53.39	0	1907769..1908152	-	127	152970278	-	KPN_01726	-	hypothetical protein
1697	 56.59	0	1908742..1909386	-	214	152970279	-	KPN_01727	-	hypothetical protein
1698	 54.39	0	1909386..1910240	-	284	152970280	-	KPN_01728	-	hypothetical protein
1699	 58.76	0	1910258..1911130	+	290	152970281	-	KPN_01729	-	carbohydrate kinase
1700	 53.67	0	1911132..1912085	-	317	152970282	-	KPN_01730	-	putative ABC transporter, nucleotide binding/ATPase protein
1701	 59.53	0	1912432..1913454	+	340	152970283	-	KPN_01731	-	periplasmic binding protein/LacI transcriptional regulator
1702	 59.26	0	1913799..1914581	+	260	152970284	-	KPN_01732	-	putative ABC transporter
1703	 59.84	0	1914621..1915601	+	326	152970285	-	KPN_01733	-	putative ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
1704	 58.80	0	1915605..1916684	+	359	152970286	-	KPN_01734	-	putative hydrolase
1705	 61.85	0	1917454..1918596	+	380	152970287	-	KPN_01735	-	putative acetylornithine deacetylase
1706	 50.55	-1	1919242..1919967	-	241	152970288	-	KPN_01736	-	putative enzyme
1707	 52.65	0	1920179..1921084	+	301	152970289	-	KPN_01737	-	LysR family transcriptional regulator
1708	 48.62	-1	1921126..1922028	-	300	152970290	-	KPN_01738	-	LysR family transcriptional regulator
1709	 48.47	-1	1922132..1923340	+	402	152970291	-	KPN_01739	-	MFS family transporter
1710	 55.23	0	1923398..1924018	-	206	152970292	-	KPN_01740	-	amino acid exporter (homoserine, HSL)
1711	 52.03	-1	1924224..1925330	-	368	152970293	-	KPN_01741	-	putative phosphotransferase system, EIIC
1712	 46.15	-2	1925373..1925684	-	103	152970294	-	KPN_01742	-	PTS family enzyme IIB, fructose-mannitol-specific
1713	 45.01	-2	1925741..1926211	-	156	152970295	-	KPN_01743	-	PTS family enzyme IIA/ enzyme IIBC
1714	 46.30	-1	1926328..1926975	-	215	152970296	-	KPN_01744	-	allulose-6-phosphate 3-epimerase
1715	 52.57	0	1927029..1928291	-	420	152970297	-	KPN_01745	-	ascorbate-specific PTS system enzyme IIC
1716	 38.58	-2	1928322..1928588	-	88	152970298	-	KPN_01746	-	PTS family protein II component
1717	 45.43	-2	1928600..1929037	-	145	152970299	-	KPN_01747	-	PTS family enzyme IIA, mannitol-specific, cryptic
1718	 52.07	-1	1929246..1930307	+	353	152970300	-	KPN_01748	-	putative periplasmic binding protein/LacI transcriptional regulator
1719	 54.73	0	1930418..1930660	-	80	152970301	-	KPN_01749	-	hypothetical protein
1720	 59.58	0	1930853..1932151	+	432	152970302	-	KPN_01750	-	major facilitator superfamily permease
1721	 57.54	0	1932189..1932725	-	178	152970303	-	KPN_01751	-	putative acetyltransferase
1722	 56.82	0	1933365..1933943	+	192	152970304	-	KPN_01752	-	TetR/AcrR family transcriptional regulator
1723	 57.13	0	1933919..1935019	-	366	152970305	-	KPN_01753	-	putative ABC-type spermidine/putrescine transport systems
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.