IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1584	 64.75	+1	1793388..1794485	-	365	152970166	-	KPN_01614	-	transcriptional activator FtrA
1585	 61.87	0	1795100..1796203	+	367	152970167	-	KPN_01615	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1586	 59.11	0	1796429..1797646	+	405	152970168	-	KPN_01616	-	high-affinity branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1587	 65.21	+1	1797708..1799282	+	524	152970169	-	KPN_01617	-	high-affinity branched-chain amino acid ABC transporter membrane protein
1588	 63.78	+1	1799282..1800355	+	357	152970170	-	KPN_01618	-	high-affinity branched-chain amino acid transport
1589	 61.78	0	1800355..1801152	+	265	152970171	-	KPN_01619	-	ATP-binding component of high-affinity branched-chain amino acid transport system
1590	 64.54	+1	1801437..1801859	+	140	152970172	-	KPN_01620	-	ATP-binding component of leucine transport
1591	 60.99	0	1802507..1803721	-	404	152970173	ydeE	KPN_01621	-	putative MFS-type transporter YdeE
1592	 61.67	0	1803899..1804798	+	299	152970174	eamA	KPN_01622	-	O-acetylserine/cysteine export protein
1593	 50.23	-1	1804847..1805065	-	72	152970175	marB	KPN_01623	-	hypothetical protein
1594	 50.79	-1	1805106..1805483	-	125	152970176	marA	KPN_01624	-	DNA-binding transcriptional activator MarA
1595	 55.17	0	1805501..1805935	-	144	152970177	marR	KPN_01625	-	DNA-binding transcriptional repressor MarR
1596	 37.96	-2	1806046..1806153	+	35	152970178	-	KPN_01626	-	hypothetical protein
1597	 55.75	0	1806197..1806865	+	222	152970179	marC	KPN_01627	-	multiple drug resistance protein MarC
1598	 60.58	0	1806934..1808133	-	399	152970180	sotB	KPN_01628	-	sugar efflux transporter
1599	 59.60	0	1808335..1809126	+	263	152970181	-	KPN_01629	-	putative oxidoreductase
1600	 65.13	+1	1809190..1809384	-	64	152970182	-	KPN_01630	-	putative oxidoreductase
1601	 61.11	0	1809389..1809478	+	29	152970183	mokB	KPN_01631	-	hypothetical protein
1602	 63.70	+1	1809493..1810437	-	314	152970184	-	KPN_01632	-	putative malate dehydrogenase
1603	 62.94	0	1810582..1811064	+	160	152970185	-	KPN_01633	-	putative acyl-CoA N-acyltransferase
1604	 64.16	+1	1811018..1811896	-	292	152970186	yneJ	KPN_01634	-	LysR family transcriptional regulator
1605	 64.22	+1	1811998..1813386	+	462	152970187	yneI	KPN_01635	-	putative aldehyde dehydrogenase
1606	 60.97	0	1813446..1814393	+	315	152970188	yneH	KPN_01636	-	glutaminase
1607	 62.06	0	1814393..1814761	+	122	152970189	yneG	KPN_01637	-	hypothetical protein
1608	 57.12	0	1814876..1816300	+	474	152970190	yneF	KPN_01638	-	putative transport protein
1609	 60.64	0	1816378..1816908	+	176	152970191	-	KPN_01639	-	putative acyltransferase
1610	 59.37	0	1817022..1818473	+	483	152970192	uxaB	KPN_01640	-	altronate oxidoreductase
1611	 47.47	-1	1819238..1819336	+	32	152970193	-	KPN_01641	-	hypothetical protein
1612	 53.76	0	1819384..1819476	-	30	152970194	-	KPN_01642	-	hypothetical protein
1613	 36.12	-2	1819742..1820458	+	238	152970195	-	KPN_01643	-	hypothetical protein
1614	 57.48	0	1821207..1821587	-	126	152970196	-	KPN_01644	-	hypothetical protein
1615	 61.68	0	1821578..1821898	-	106	152970197	-	KPN_01645	-	putative carboxymuconolactone decarboxylase
1616	 61.57	0	1822059..1822862	-	267	152970198	-	KPN_01646	-	trans-aconitate 2-methyltransferase
1617	 50.52	-1	1823029..1823319	-	96	152970199	-	KPN_01647	-	hypothetical protein
1618	 60.94	0	1823548..1824735	-	395	152970200	-	KPN_01648	-	hypothetical protein
1619	 62.75	0	1824891..1825298	-	135	152970201	-	KPN_01649	-	putative glyoxalase/bleomycin resistance protein/dioxygenas
1620	 61.66	0	1825521..1826678	+	385	152970202	-	KPN_01650	-	putative sugar transport protein
1621	 64.07	+1	1826675..1827520	-	281	152970203	-	KPN_01651	-	LysR family transcriptional regulator
1622	 61.06	0	1828679..1829338	-	219	152970204	-	KPN_01652	-	putative binding-protein-dependent transport systems inner membrane componen
1623	 62.75	0	1829335..1830126	-	263	152970205	-	KPN_01653	-	D- and L-methionine ABC transporter ATP-binding protein
1624	 57.99	0	1830123..1830929	-	268	152970206	-	KPN_01654	-	putative ABC-type metal ion transport system, periplasmic component/surface antigen
1625	 62.68	0	1830953..1831981	-	342	152970207	-	KPN_01655	-	putative 2OG-Fe(II) oxygenase
1626	 56.84	0	1832243..1832527	+	94	152970208	-	KPN_01656	-	hypothetical protein
1627	 58.33	0	1832549..1832860	+	103	152970209	-	KPN_01657	-	hypothetical protein
1628	 63.89	+1	1833037..1833792	+	251	152970210	-	KPN_01658	-	hypothetical protein
1629	 65.71	+1	1833802..1834746	-	314	152970211	-	KPN_01659	-	putative ARAC-type regulatory protein
1630	 64.81	+1	1834852..1836090	+	412	152970212	-	KPN_01660	-	MFS family transporter
1631	 67.17	+1	1836067..1837056	-	329	152970213	-	KPN_01661	-	putative oxidoreductase
1632	 64.61	+1	1838216..1839139	+	307	152970214	-	KPN_01662	-	transcriptional regulator LysR
1633	 64.76	+1	1839120..1840274	-	384	152970215	-	KPN_01663	-	putative flavoprotein monooxygenase
1634	 61.45	0	1840620..1841999	+	459	152970216	-	KPN_01664	-	guanine/xanthin permease
1635	 65.87	+1	1841977..1842477	+	166	152970217	-	KPN_01665	-	hypothetical protein
1636	 65.14	+1	1842474..1842800	+	108	152970218	-	KPN_01666	-	transthyretin-like protein
1637	 56.25	0	1843045..1843332	+	95	152970219	hipB	KPN_01667	-	DNA-binding transcriptional regulator HipB
1638	 61.45	0	1843332..1844654	+	440	152970220	hipA	KPN_01668	-	persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator
1639	 61.79	0	1844671..1845963	-	430	152970221	-	KPN_01669	-	hypothetical protein
1640	 63.18	0	1846105..1847109	-	334	152970222	-	KPN_01670	-	fimbrial protein
1641	 61.59	0	1847097..1849598	-	833	152970223	-	KPN_01671	-	putative fimbrial biogenesis outer membrane usher protein
1642	 56.32	0	1849614..1850309	-	231	152970224	-	KPN_01672	-	putative fimbrial chaperone
1643	 53.37	0	1850387..1850950	-	187	152970225	-	KPN_01673	-	putative fimbrial-like protein
1644	 56.19	0	1851912..1852694	-	260	152970226	-	KPN_01674	-	methionine aminopeptidase
1645	 50.68	-1	1852675..1852893	-	72	152970227	-	KPN_01675	-	hypothetical protein
1646	 48.59	-1	1853183..1853431	-	82	152970228	-	KPN_01676	-	hypothetical protein
1647	 54.11	0	1853728..1855383	+	551	152970229	-	KPN_01677	-	hypothetical protein
1648	 61.29	0	1855417..1856346	-	309	152970230	-	KPN_01678	-	putative oxidoreductase, Fe-S subunit
1649	 49.65	-1	1856540..1856680	-	46	152970231	-	KPN_01679	-	hypothetical protein
1650	 45.50	-2	1857361..1857804	-	147	152970232	-	KPN_01680	-	PTS family enzyme IIA/ FPr
1651	 55.34	0	1857794..1859179	-	461	152970233	-	KPN_01681	-	galactose-proton symport of transport system
1652	 58.01	0	1859985..1861313	-	442	152970234	-	KPN_01682	-	6-phospho-beta-glucosidase
1653	 57.34	0	1861325..1862857	-	510	152970235	-	KPN_01683	-	PTS family enzyme IIC/enzyme IIB
1654	 55.65	0	1863125..1863823	+	232	152970236	-	KPN_01684	-	putative transcriptional regulator
1655	 66.21	+1	1864684..1865568	+	294	152970237	-	KPN_01685	-	transcriptional regulator LysR
1656	 49.28	-1	1865586..1865723	-	45	152970238	-	KPN_01686	-	hypothetical protein
1657	 63.67	0	1865722..1866555	+	277	152970239	-	KPN_01687	-	putative dehydrogenase
1658	 53.11	0	1866638..1867795	-	385	152970240	-	KPN_01688	-	putative sugar diacid utilization regulator
1659	 64.03	+1	1867792..1868967	-	391	152970241	-	KPN_01689	-	glycerate kinase I
1660	 58.00	0	1868981..1870318	-	445	152970242	-	KPN_01690	-	putative general substrate transporter
1661	 61.66	0	1870428..1871306	-	292	152970243	-	KPN_01691	-	putative gluconolactonase
1662	 58.82	0	1871320..1872657	-	445	152970244	-	KPN_01692	-	major facilitator family transporter
1663	 62.72	0	1872793..1873983	-	396	152970245	-	KPN_01693	-	putative acetyl-CoA acetyltransferase
1664	 58.64	0	1873995..1874729	-	244	152970246	-	KPN_01694	-	3-ketoacyl-(acyl-carrier-protein) reductase
1665	 61.58	0	1874741..1876333	-	530	152970247	-	KPN_01695	-	bifunctional putative acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit
1666	 59.41	0	1876330..1877886	-	518	152970248	-	KPN_01696	-	putative acyl-CoA synthase
1667	 58.21	0	1878135..1878524	-	129	152970249	-	KPN_01697	-	putative glyoxalase/bleomycin resistance protein/dioxygenas
1668	 55.51	0	1878526..1879860	-	444	152970250	-	KPN_01698	-	fucose permease
1669	 60.56	0	1879897..1880796	-	299	152970251	-	KPN_01699	-	ribokinase
1670	 57.84	0	1880850..1881506	-	218	152970252	-	KPN_01700	-	allulose-6-phosphate 3-epimerase
1671	 59.93	0	1881649..1882449	-	266	152970253	-	KPN_01701	-	DeoR transcriptional regulator
1672	 57.47	0	1882812..1883561	+	249	152970254	-	KPN_01702	-	deoxyribose-phosphate aldolase
1673	 58.70	0	1883615..1885120	+	501	152970255	-	KPN_01703	-	putative pentose kinase
1674	 53.49	0	1885182..1885955	+	257	152970256	-	KPN_01704	-	DeoR transcriptional regulator
1675	 53.33	0	1886092..1887006	-	304	152970257	-	KPN_01705	-	putative ARAC-type regulatory protein
1676	 46.30	-1	1887187..1887456	-	89	152970258	-	KPN_01706	-	hypothetical protein
1677	 48.72	-1	1887456..1888553	+	365	152970259	-	KPN_01707	-	hypothetical protein
1678	 49.46	-1	1888753..1889124	+	123	152970260	-	KPN_01708	-	hypothetical protein
1679	 58.00	0	1889286..1890266	+	326	152970261	-	KPN_01709	-	putative helix-turn-helix, AraC type
1680	 53.02	0	1890345..1891355	+	336	152970262	-	KPN_01710	-	glyceraldehyde-3-phosphate dehydrogenase
1681	 54.02	0	1891603..1891689	+	28	152970263	-	KPN_01711	-	hypothetical protein
1682	 37.30	-2	1891992..1892117	+	41	152970264	-	KPN_01712	-	hypothetical protein
1683	 39.22	-2	1893631..1894275	-	214	152970265	-	KPN_01713	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.