IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1540	 61.02	0	1746633..1748120	-	495	152970122	-	KPN_01570	-	putative Zn-dependent carboxypeptidase
1541	 50.54	-1	1748337..1748429	+	30	152970123	-	KPN_01571	-	hypothetical protein
1542	 61.31	0	1748460..1749710	-	416	152970124	ynfM	KPN_01572	-	putative transport protein
1543	 61.68	0	1749841..1750743	+	300	152970125	ynfL	KPN_01573	-	LysR family transcriptional regulator
1544	 57.11	0	1750864..1752087	+	407	152970126	mlc	KPN_01574	-	putative NAGC-like transcriptional regulator
1545	 59.77	0	1752215..1752910	+	231	152970127	bioD	KPN_01575	-	putative dithiobiotin synthetase
1546	 63.27	0	1752863..1754158	-	431	152970128	ynfJ	KPN_01576	-	putative voltage-gated ClC-type chloride channel ClcB
1547	 64.20	+1	1754292..1754900	-	202	152970129	ynfI	KPN_01577	-	twin-argninine leader-binding protein DmsD
1548	 61.19	0	1754942..1755799	-	285	152970130	ynfH	KPN_01578	-	putative dimethyl sulfoxide reductase, anchor subunit
1549	 60.36	0	1755801..1756418	-	205	152970131	dmsB	KPN_01579	-	anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
1550	 60.10	0	1756429..1758864	-	811	152970132	ynfE	KPN_01580	-	putative dimethyl sulfoxide reductase, major subunit
1551	 57.41	0	1759015..1759284	-	89	152970133	ynfD	KPN_01581	-	hypothetical protein
1552	 57.98	0	1759395..1760096	+	233	152970134	ynfC	KPN_01582	-	hypothetical protein
1553	 54.01	0	1760090..1760650	-	186	152970135	speG	KPN_01583	-	spermidine N1-acetyltransferase
1554	 58.48	0	1760729..1761070	-	113	152970136	ynfB	KPN_01584	-	hypothetical protein
1555	 62.08	0	1761215..1761541	+	108	152970137	ynfA	KPN_01585	-	hypothetical protein
1556	 61.37	0	1761655..1762938	+	427	152970138	-	KPN_01586	-	putative general substrate transporter
1557	 60.38	0	1763192..1764655	+	487	152970139	ydfI	KPN_01587	-	putative mannitol dehydrogenase
1558	 49.54	-1	1764920..1765351	+	143	152970140	-	KPN_01588	-	putative universal stress protein G
1559	 52.69	0	1765402..1766088	-	228	152970141	ydfH	KPN_01589	-	GntR family transcriptional regulator
1560	 58.27	0	1766180..1766929	-	249	152970142	ydfG	KPN_01590	-	3-hydroxy acid dehydrogenase
1561	 61.09	0	1767060..1769105	+	681	152970143	dcp	KPN_01591	-	dipeptidyl carboxypeptidase II
1562	 46.51	-1	1769183..1769569	-	128	152970144	-	KPN_01592	-	hypothetical protein
1563	 53.26	0	1769597..1770439	+	280	152970145	-	KPN_01593	-	putative ARAC-type regulatory protein
1564	 58.96	0	1770490..1771164	-	224	152970146	-	KPN_01594	-	hypothetical protein
1565	 43.53	-2	1771638..1772294	-	218	152970147	-	KPN_01595	-	putative 2-component transcriptional regulator
1566	 49.37	-1	1773285..1773758	+	157	152970148	-	KPN_01596	-	heat shock protein
1567	 62.57	0	1773924..1774436	+	170	152970149	ydeJ	KPN_01597	-	competence damage-inducible protein A
1568	 59.20	0	1774457..1775674	-	405	152970150	-	KPN_01598	-	hypothetical protein
1569	 48.20	-1	1776225..1776836	-	203	152970151	-	KPN_01599	-	LuxR transcriptional regulator
1570	 54.56	0	1777132..1778073	+	313	152970152	-	KPN_01600	-	putative ARAC-type regulatory protein
1571	 59.85	0	1778100..1779464	-	454	152970153	ygbN	KPN_01601	-	inner membrane permease YgbN
1572	 59.26	0	1779522..1780277	-	251	152970154	ygbM	KPN_01602	-	putative epimerase/isomerase
1573	 61.35	0	1780309..1780929	-	206	152970155	ygbL	KPN_01603	-	putative aldolase
1574	 65.72	+1	1780922..1782187	-	421	152970156	ygbK	KPN_01604	-	hypothetical protein
1575	 63.79	+1	1782199..1783101	-	300	152970157	ygbJ	KPN_01605	-	putative dehydrogenase
1576	 61.55	0	1783401..1784123	+	240	152970158	ygbI	KPN_01606	-	putative DEOR-type transcriptional regulator
1577	 63.07	0	1784144..1785004	-	286	152970159	-	KPN_01607	-	beta-lactamase SHV-11
1578	 56.03	0	1785281..1785562	+	93	152970160	-	KPN_01608	-	putative K+ transporting ATPase, KdpC subunit
1579	 56.05	0	1786768..1788039	-	423	152970161	lacY	KPN_01609	-	putative proton/sugar symporter, LacY
1580	 64.25	+1	1788088..1791195	-	1035	152970162	lacZ	KPN_01610	-	beta-D-galactosidase
1581	 67.32	+1	1791392..1792456	+	354	152970163	lacI	KPN_01611	-	lac repressor
1582	 42.75	-2	1792453..1792590	-	45	152970164	-	KPN_01612	-	hypothetical protein
1583	 56.92	0	1793204..1793398	-	64	152970165	-	KPN_01613	-	hypothetical protein
1584	 64.75	+1	1793388..1794485	-	365	152970166	-	KPN_01614	-	transcriptional activator FtrA
1585	 61.87	0	1795100..1796203	+	367	152970167	-	KPN_01615	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1586	 59.11	0	1796429..1797646	+	405	152970168	-	KPN_01616	-	high-affinity branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1587	 65.21	+1	1797708..1799282	+	524	152970169	-	KPN_01617	-	high-affinity branched-chain amino acid ABC transporter membrane protein
1588	 63.78	+1	1799282..1800355	+	357	152970170	-	KPN_01618	-	high-affinity branched-chain amino acid transport
1589	 61.78	0	1800355..1801152	+	265	152970171	-	KPN_01619	-	ATP-binding component of high-affinity branched-chain amino acid transport system
1590	 64.54	+1	1801437..1801859	+	140	152970172	-	KPN_01620	-	ATP-binding component of leucine transport
1591	 60.99	0	1802507..1803721	-	404	152970173	ydeE	KPN_01621	-	putative MFS-type transporter YdeE
1592	 61.67	0	1803899..1804798	+	299	152970174	eamA	KPN_01622	-	O-acetylserine/cysteine export protein
1593	 50.23	-1	1804847..1805065	-	72	152970175	marB	KPN_01623	-	hypothetical protein
1594	 50.79	-1	1805106..1805483	-	125	152970176	marA	KPN_01624	-	DNA-binding transcriptional activator MarA
1595	 55.17	0	1805501..1805935	-	144	152970177	marR	KPN_01625	-	DNA-binding transcriptional repressor MarR
1596	 37.96	-2	1806046..1806153	+	35	152970178	-	KPN_01626	-	hypothetical protein
1597	 55.75	0	1806197..1806865	+	222	152970179	marC	KPN_01627	-	multiple drug resistance protein MarC
1598	 60.58	0	1806934..1808133	-	399	152970180	sotB	KPN_01628	-	sugar efflux transporter
1599	 59.60	0	1808335..1809126	+	263	152970181	-	KPN_01629	-	putative oxidoreductase
1600	 65.13	+1	1809190..1809384	-	64	152970182	-	KPN_01630	-	putative oxidoreductase
1601	 61.11	0	1809389..1809478	+	29	152970183	mokB	KPN_01631	-	hypothetical protein
1602	 63.70	+1	1809493..1810437	-	314	152970184	-	KPN_01632	-	putative malate dehydrogenase
1603	 62.94	0	1810582..1811064	+	160	152970185	-	KPN_01633	-	putative acyl-CoA N-acyltransferase
1604	 64.16	+1	1811018..1811896	-	292	152970186	yneJ	KPN_01634	-	LysR family transcriptional regulator
1605	 64.22	+1	1811998..1813386	+	462	152970187	yneI	KPN_01635	-	putative aldehyde dehydrogenase
1606	 60.97	0	1813446..1814393	+	315	152970188	yneH	KPN_01636	-	glutaminase
1607	 62.06	0	1814393..1814761	+	122	152970189	yneG	KPN_01637	-	hypothetical protein
1608	 57.12	0	1814876..1816300	+	474	152970190	yneF	KPN_01638	-	putative transport protein
1609	 60.64	0	1816378..1816908	+	176	152970191	-	KPN_01639	-	putative acyltransferase
1610	 59.37	0	1817022..1818473	+	483	152970192	uxaB	KPN_01640	-	altronate oxidoreductase
1611	 47.47	-1	1819238..1819336	+	32	152970193	-	KPN_01641	-	hypothetical protein
1612	 53.76	0	1819384..1819476	-	30	152970194	-	KPN_01642	-	hypothetical protein
1613	 36.12	-2	1819742..1820458	+	238	152970195	-	KPN_01643	-	hypothetical protein
1614	 57.48	0	1821207..1821587	-	126	152970196	-	KPN_01644	-	hypothetical protein
1615	 61.68	0	1821578..1821898	-	106	152970197	-	KPN_01645	-	putative carboxymuconolactone decarboxylase
1616	 61.57	0	1822059..1822862	-	267	152970198	-	KPN_01646	-	trans-aconitate 2-methyltransferase
1617	 50.52	-1	1823029..1823319	-	96	152970199	-	KPN_01647	-	hypothetical protein
1618	 60.94	0	1823548..1824735	-	395	152970200	-	KPN_01648	-	hypothetical protein
1619	 62.75	0	1824891..1825298	-	135	152970201	-	KPN_01649	-	putative glyoxalase/bleomycin resistance protein/dioxygenas
1620	 61.66	0	1825521..1826678	+	385	152970202	-	KPN_01650	-	putative sugar transport protein
1621	 64.07	+1	1826675..1827520	-	281	152970203	-	KPN_01651	-	LysR family transcriptional regulator
1622	 61.06	0	1828679..1829338	-	219	152970204	-	KPN_01652	-	putative binding-protein-dependent transport systems inner membrane componen
1623	 62.75	0	1829335..1830126	-	263	152970205	-	KPN_01653	-	D- and L-methionine ABC transporter ATP-binding protein
1624	 57.99	0	1830123..1830929	-	268	152970206	-	KPN_01654	-	putative ABC-type metal ion transport system, periplasmic component/surface antigen
1625	 62.68	0	1830953..1831981	-	342	152970207	-	KPN_01655	-	putative 2OG-Fe(II) oxygenase
1626	 56.84	0	1832243..1832527	+	94	152970208	-	KPN_01656	-	hypothetical protein
1627	 58.33	0	1832549..1832860	+	103	152970209	-	KPN_01657	-	hypothetical protein
1628	 63.89	+1	1833037..1833792	+	251	152970210	-	KPN_01658	-	hypothetical protein
1629	 65.71	+1	1833802..1834746	-	314	152970211	-	KPN_01659	-	putative ARAC-type regulatory protein
1630	 64.81	+1	1834852..1836090	+	412	152970212	-	KPN_01660	-	MFS family transporter
1631	 67.17	+1	1836067..1837056	-	329	152970213	-	KPN_01661	-	putative oxidoreductase
1632	 64.61	+1	1838216..1839139	+	307	152970214	-	KPN_01662	-	transcriptional regulator LysR
1633	 64.76	+1	1839120..1840274	-	384	152970215	-	KPN_01663	-	putative flavoprotein monooxygenase
1634	 61.45	0	1840620..1841999	+	459	152970216	-	KPN_01664	-	guanine/xanthin permease
1635	 65.87	+1	1841977..1842477	+	166	152970217	-	KPN_01665	-	hypothetical protein
1636	 65.14	+1	1842474..1842800	+	108	152970218	-	KPN_01666	-	transthyretin-like protein
1637	 56.25	0	1843045..1843332	+	95	152970219	hipB	KPN_01667	-	DNA-binding transcriptional regulator HipB
1638	 61.45	0	1843332..1844654	+	440	152970220	hipA	KPN_01668	-	persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator
1639	 61.79	0	1844671..1845963	-	430	152970221	-	KPN_01669	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.