IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1451	 60.19	0	1643090..1644016	+	308	152970033	paaX	KPN_01480	-	transcriptional repressor for phenylacetic acid degradation
1452	 59.80	0	1644026..1644622	+	198	152970034	paaY	KPN_01481	-	phenylacetic acid degradation protein; putative transferase
1453	 55.15	0	1644634..1645041	+	135	152970035	-	KPN_01482	-	hypothetical protein
1454	 57.43	0	1645078..1645683	-	201	152970036	acpD	KPN_01483	-	azoreductase
1455	 59.95	0	1645888..1649790	+	1300	152970037	hrpA	KPN_01484	-	ATP-dependent RNA helicase HrpA
1456	 59.56	0	1649851..1650525	-	224	152970038	-	KPN_01485	-	putative O-methyltransferase
1457	 63.55	0	1650526..1651905	-	459	152970039	-	KPN_01486	-	putative outer membrane efflux protein
1458	 60.96	0	1651902..1652987	-	361	152970040	-	KPN_01487	-	putative multidrug resistance efflux pump
1459	 60.86	0	1653016..1654668	-	550	152970041	-	KPN_01488	-	major facilitator superfamily permease
1460	 59.95	0	1654668..1655099	-	143	152970042	-	KPN_01489	-	putative regulatory protein  MarR
1461	 53.11	0	1655207..1656106	-	299	152970043	-	KPN_01490	-	LysR family transcriptional regulator
1462	 57.29	0	1656315..1657253	+	312	152970044	-	KPN_01491	-	oxidoreductase
1463	 60.24	0	1657409..1658683	-	424	152970045	-	KPN_01492	-	putative glutamic dehyrogenase-like protein
1464	 63.76	+1	1659212..1660417	+	401	152970046	-	KPN_01493	-	bifunctional succinylornithine transaminase/acetylornithine transaminase
1465	 62.85	0	1660436..1661458	+	340	152970047	-	KPN_01494	-	arginine succinyltransferase
1466	 63.24	0	1662936..1664276	+	446	152970048	-	KPN_01496	-	succinylarginine dihydrolase
1467	 65.79	+1	1664260..1665282	+	340	152970049	-	KPN_01497	-	succinylglutamate desuccinylase
1468	 61.64	0	1665292..1666722	+	476	152970050	-	KPN_01498	-	D-alanine/D-serine/glycine transport protein
1469	 61.61	0	1666929..1668254	-	441	152970051	-	KPN_01499	-	shikimate and dehydroshikimate transport protein
1470	 68.54	+1	1668635..1669435	+	266	152970052	ydcF	KPN_01500	-	hypothetical protein
1471	 61.94	0	1669657..1671072	+	471	152970053	aldA	KPN_01501	-	aldehyde dehydrogenase A
1472	 57.56	0	1671121..1672119	-	332	152970054	gapA	KPN_01502	-	glyceraldehyde-3-phosphate dehydrogenase
1473	 51.57	-1	1672402..1672560	+	52	152970055	yqaE	KPN_01503	-	YqaE family transport protein
1474	 54.96	0	1672595..1672987	-	130	152970056	ydfO	KPN_01504	-	hypothetical protein
1475	 52.99	0	1673238..1673471	-	77	152970057	yedF	KPN_01505	-	hypothetical protein
1476	 62.86	0	1673468..1674676	-	402	152970058	yedE	KPN_01506	-	putative inner membrane protein
1477	 64.97	+1	1674780..1675133	-	117	152970059	-	KPN_01507	-	hypothetical protein
1478	 49.58	-1	1675370..1675849	+	159	152970060	-	KPN_01508	-	hypothetical protein
1479	 56.86	0	1675919..1676122	-	67	152970061	-	KPN_01509	-	hypothetical protein
1480	 60.06	0	1676434..1677462	+	342	152970062	-	KPN_01510	-	putative Mg2+ and Co2+ transporters
1481	 62.32	0	1677476..1678648	-	390	152970063	malY	KPN_01511	-	bifunctional PLP-dependent beta-cystathionase; repressor of maltose regulon through interaction with MalT
1482	 60.70	0	1678700..1680292	-	530	152970064	malX	KPN_01512	-	bifunctional maltose and glucose-specific PTS system components IICB
1483	 64.63	+1	1680387..1681415	+	342	152970065	malI	KPN_01513	-	DNA-binding transcriptional repressor MalI
1484	 61.98	0	1681455..1683032	-	525	152970066	ydgA	KPN_01514	-	hypothetical protein
1485	 61.83	0	1683119..1684297	-	392	152970067	manA	KPN_01515	-	mannose-6-phosphate isomerase
1486	 59.26	0	1684499..1686145	+	548	152970068	fumA	KPN_01516	-	fumarase A (fumarate hydratase class I), aerobic isozyme
1487	 61.10	0	1686485..1687885	+	466	152970069	fumC	KPN_01517	-	fumarate hydratase
1488	 62.27	0	1687875..1688807	-	310	152970070	tus	KPN_01518	-	DNA replication terminus site-binding protein
1489	 59.98	0	1688883..1690184	-	433	152970071	rstB	KPN_01519	-	sensor protein RstB
1490	 54.27	0	1690440..1690802	-	120	152970072	-	KPN_01520	-	hypothetical protein
1491	 58.75	0	1691045..1691764	-	239	152970073	rstA	KPN_01521	-	DNA-binding transcriptional regulator RstA
1492	 58.93	0	1691893..1692228	+	111	152970074	ydgC	KPN_01522	-	hypothetical protein
1493	 61.00	0	1692225..1692947	-	240	152970075	ydgB	KPN_01523	-	short chain dehydrogenase
1494	 60.95	0	1692984..1694366	-	460	152970076	ydgI	KPN_01524	-	putative arginine/ornithine antiporter
1495	 57.83	0	1694544..1695494	-	316	152970077	ydgH	KPN_01525	-	hypothetical protein
1496	 58.32	0	1696001..1697545	+	514	152970078	pntA	KPN_01526	-	NAD(P) transhydrogenase subunit alpha
1497	 58.53	0	1697556..1698944	+	462	152970079	pntB	KPN_01527	-	pyridine nucleotide transhydrogenase
1498	 53.97	0	1699093..1699281	+	62	152970080	ydiH	KPN_01528	-	hypothetical protein
1499	 58.15	0	1699390..1700340	-	316	152970081	ydaA	KPN_01529	-	universal stress protein UspE
1500	 56.43	0	1700479..1700937	-	152	152970082	fnr	KPN_01530	-	transcriptional regulation of aerobic, anaerobic respiration, osmotic balance
1501	 61.36	0	1701426..1701953	-	175	152970083	ogt	KPN_01531	-	O-6-alkylguanine-DNA:cysteine-protein methyltransferase
1502	 58.94	0	1702425..1703951	-	508	152970084	abgT	KPN_01532	-	putative aminobenzoyl-glutamate transporter
1503	 63.62	0	1704071..1705516	-	481	152970085	abgB	KPN_01533	-	aminobenzoyl-glutamate utilization protein
1504	 66.74	+1	1705516..1706826	-	436	152970086	abgA	KPN_01534	-	aminobenzoyl-glutamate utilization protein
1505	 59.74	0	1706993..1707901	+	302	152970087	abgR	KPN_01535	-	putative DNA-binding transcriptional regulator
1506	 60.82	0	1708003..1708566	+	187	152970088	ydaL	KPN_01536	-	hypothetical protein
1507	 64.31	+1	1708563..1709369	-	268	152970089	-	KPN_01537	-	IclR family transcriptional regulator
1508	 62.59	0	1709539..1710225	+	228	152970090	-	KPN_01538	-	acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
1509	 63.62	0	1710236..1710892	+	218	152970091	-	KPN_01539	-	acetyl-CoA:acetoacetyl-CoA transferase beta subunit
1510	 66.67	+1	1710900..1712105	+	401	152970092	-	KPN_01540	-	acetyl-CoA acetyltransferase
1511	 67.11	+1	1712115..1713467	+	450	152970093	-	KPN_01541	-	putative fumarate lyase
1512	 63.92	+1	1713457..1714221	+	254	152970094	-	KPN_01542	-	putative 3-oxoadipate enol-lactonase II
1513	 59.23	0	1714214..1714603	+	129	152970095	-	KPN_01543	-	putative 4-carboxymuconolactone decarboxylase
1514	 60.88	0	1716109..1717353	-	414	152970096	-	KPN_01544	-	hypothetical protein
1515	 63.42	0	1717378..1717716	-	112	152970097	-	KPN_01545	-	putative ATP-binding component of a transport system
1516	 59.53	0	1717889..1719541	-	550	152970098	fumB	KPN_01546	-	fumarase B (fumarate hydratase class I), anaerobic isozyme
1517	 59.78	0	1719596..1721032	-	478	152970099	-	KPN_01547	-	DASS family tartrate:succinate antiporter
1518	 59.76	0	1721749..1724526	+	925	152970100	-	KPN_01548	-	putative NADH:flavin oxidoreductase
1519	 59.83	0	1724594..1725544	+	316	152970101	-	KPN_01549	-	putative thiamine biosynthesis lipoprotein
1520	 59.53	0	1725525..1726211	-	228	152970102	dcuR	KPN_01550	-	DNA-binding transcriptional activator DcuR
1521	 59.86	0	1726241..1727857	-	538	152970103	dcuS	KPN_01551	-	sensory histidine kinase DcuS
1522	 58.26	0	1728013..1728369	+	118	152970104	-	KPN_01552	-	hypothetical protein
1523	 63.99	+1	1728521..1729453	+	310	152970105	-	KPN_01553	-	hypothetical protein
1524	 57.80	0	1729727..1731373	+	548	152970106	-	KPN_01554	-	malate:quinone oxidoreductase
1525	 40.66	-2	1731533..1731928	-	131	152970107	-	KPN_01555	-	hypothetical protein
1526	 42.57	-2	1731936..1733159	-	407	152970108	-	KPN_01556	-	hypothetical protein
1527	 58.04	0	1733762..1734688	+	308	152970109	-	KPN_01557	-	transcriptional regulator LysR
1528	 67.00	+1	1734678..1735580	-	300	152970110	-	KPN_01558	-	acyl carrier protein S-malonyltransferase
1529	 66.83	+1	1735580..1736197	-	205	152970111	-	KPN_01559	-	phosphoribosyl-dephospho-CoA transferase
1530	 64.42	+1	1737297..1738097	-	266	152970112	-	KPN_01560	-	acetyl-CoA carboxylase alpha subunit
1531	 61.99	0	1738097..1738930	-	277	152970113	-	KPN_01561	-	malonate decarboxylase subunit beta
1532	 67.73	+1	1739240..1740082	-	280	152970114	-	KPN_01562	-	triphosphoribosyl-dephospho-CoA transferase
1533	 60.21	0	1740082..1741737	-	551	152970115	-	KPN_01563	-	bifunctional putative acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit
1534	 55.94	0	1741962..1742996	-	344	152970116	ydgG	KPN_01564	-	putative transport protein
1535	 47.11	-1	1743439..1743801	+	120	152970117	ydgF	KPN_01565	-	multidrug efflux system protein MdtJ
1536	 58.79	0	1743788..1744117	+	109	152970118	ydgE	KPN_01566	-	multidrug efflux system protein MdtI
1537	 60.64	0	1744291..1745103	-	270	152970119	ydgD	KPN_01567	-	putative enzyme
1538	 52.38	0	1745585..1745689	+	34	152970120	-	KPN_01568	-	hypothetical protein
1539	 54.05	0	1746049..1746468	-	139	152970121	asr	KPN_01569	-	acid shock protein
1540	 61.02	0	1746633..1748120	-	495	152970122	-	KPN_01570	-	putative Zn-dependent carboxypeptidase
1541	 50.54	-1	1748337..1748429	+	30	152970123	-	KPN_01571	-	hypothetical protein
1542	 61.31	0	1748460..1749710	-	416	152970124	ynfM	KPN_01572	-	putative transport protein
1543	 61.68	0	1749841..1750743	+	300	152970125	ynfL	KPN_01573	-	LysR family transcriptional regulator
1544	 57.11	0	1750864..1752087	+	407	152970126	mlc	KPN_01574	-	putative NAGC-like transcriptional regulator
1545	 59.77	0	1752215..1752910	+	231	152970127	bioD	KPN_01575	-	putative dithiobiotin synthetase
1546	 63.27	0	1752863..1754158	-	431	152970128	ynfJ	KPN_01576	-	putative voltage-gated ClC-type chloride channel ClcB
1547	 64.20	+1	1754292..1754900	-	202	152970129	ynfI	KPN_01577	-	twin-argninine leader-binding protein DmsD
1548	 61.19	0	1754942..1755799	-	285	152970130	ynfH	KPN_01578	-	putative dimethyl sulfoxide reductase, anchor subunit
1549	 60.36	0	1755801..1756418	-	205	152970131	dmsB	KPN_01579	-	anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
1550	 60.10	0	1756429..1758864	-	811	152970132	ynfE	KPN_01580	-	putative dimethyl sulfoxide reductase, major subunit
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.