IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1412	 50.80	-1	1598767..1599264	-	165	152969994	-	KPN_01441	-	hypothetical protein
1413	 39.57	-2	1599453..1600109	-	218	152969995	-	KPN_01442	-	hypothetical protein
1414	 55.01	0	1600280..1600957	-	225	152969996	-	KPN_01443	-	hypothetical protein
1415	 53.52	0	1601591..1602016	-	141	152969997	ynaF	KPN_01444	-	hypothetical protein
1416	 52.21	0	1602463..1603617	-	384	152969998	ompN	KPN_01445	-	outer membrane pore protein N, non-specific
1417	 61.73	0	1603974..1607501	-	1175	152969999	ydbK	KPN_01446	-	putative oxidoreductase, Fe-S subunit
1418	 66.27	+1	1607876..1608127	+	83	152970000	-	KPN_01447	-	hypothetical protein
1419	 58.73	0	1608173..1608613	-	146	152970001	hslJ	KPN_01448	-	heat shock protein hslJ
1420	 58.18	0	1608736..1609725	-	329	152970002	ldhA	KPN_01449	-	D-lactate dehydrogenase
1421	 60.28	0	1609873..1610373	-	166	152970003	-	KPN_01450	-	hypothetical protein
1422	 63.60	0	1610580..1613219	+	879	152970004	ydbH	KPN_01451	-	hypothetical protein
1423	 50.54	-1	1613216..1613401	+	61	152970005	ynbE	KPN_01452	-	hypothetical protein
1424	 62.96	0	1613409..1613732	+	107	152970006	ydbL	KPN_01453	-	hypothetical protein
1425	 63.01	0	1613733..1614635	-	300	152970007	feaR	KPN_01454	-	DNA-binding transcriptional activator FeaR
1426	 65.67	+1	1614871..1616370	+	499	152970008	feaB	KPN_01455	-	phenylacetaldehyde dehydrogenase
1427	 67.56	+1	1616495..1617385	+	296	152970009	-	KPN_01456	-	2-dehydropantoate 2-reductase
1428	 63.01	0	1617403..1618140	-	245	152970010	-	KPN_01457	-	hypothetical protein
1429	 58.97	0	1618140..1618970	-	276	152970011	-	KPN_01458	-	extracellular solute-binding family protein 3
1430	 64.03	+1	1618994..1619866	-	290	152970012	-	KPN_01459	-	putative dioxygenase
1431	 59.57	0	1619893..1621413	-	506	152970013	-	KPN_01460	-	putative ATP-binding component of a transport system
1432	 56.39	0	1621902..1622816	+	304	152970014	-	KPN_01461	-	LysR family transcriptional regulator
1433	 65.48	+1	1622986..1624245	+	419	152970015	-	KPN_01462	-	hypothetical protein
1434	 59.31	0	1624270..1624704	+	144	152970016	-	KPN_01463	-	putative endoribonuclease
1435	 65.98	+1	1625368..1626525	+	385	152970017	-	KPN_01464	-	acetylornithine deacetylase
1436	 64.10	+1	1626550..1627368	+	272	152970018	-	KPN_01465	-	putative phytanoyl-CoA dioxygenase
1437	 68.39	+1	1627391..1628374	+	327	152970019	-	KPN_01466	-	putative oxidoreductase
1438	 57.01	0	1628377..1630644	-	755	152970020	tynA	KPN_01467	-	tyramine oxidase
1439	 61.61	0	1631108..1633165	-	685	152970021	paaZ	KPN_01468	-	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase
1440	 60.54	0	1633452..1634381	+	309	152970022	paaA	KPN_01469	-	phenylacetate-CoA oxygenase subunit PaaA
1441	 55.21	0	1634393..1634680	+	95	152970023	paaB	KPN_01470	-	phenylacetate-CoA oxygenase subunit PaaB
1442	 61.11	0	1634688..1635443	+	251	152970024	paaC	KPN_01471	-	phenylacetic acid degradation protein
1443	 60.84	0	1635455..1635952	+	165	152970025	paaD	KPN_01472	-	phenylacetic acid degradation protein
1444	 61.62	0	1635960..1637030	+	356	152970026	paaE	KPN_01473	-	phenylacetic acid degradation NADH oxidoreductase
1445	 62.63	0	1637027..1637794	+	255	152970027	paaF	KPN_01474	-	enoyl-CoA hydratase-isomerase
1446	 64.39	+1	1637797..1638585	+	262	152970028	paaG	KPN_01475	-	enoyl-CoA hydratase
1447	 62.32	0	1638586..1640010	+	474	152970029	paaH	KPN_01476	-	3-hydroxybutyryl-CoA dehydrogenase
1448	 56.97	0	1640000..1640422	+	140	152970030	paaI	KPN_01477	-	phenylacetic acid degradation protein
1449	 64.51	+1	1640422..1641627	+	401	152970031	paaJ	KPN_01478	-	beta-ketoadipyl CoA thiolase
1450	 58.47	0	1641654..1642970	+	438	152970032	paaK	KPN_01479	-	phenylacetate-CoA ligase
1451	 60.19	0	1643090..1644016	+	308	152970033	paaX	KPN_01480	-	transcriptional repressor for phenylacetic acid degradation
1452	 59.80	0	1644026..1644622	+	198	152970034	paaY	KPN_01481	-	phenylacetic acid degradation protein; putative transferase
1453	 55.15	0	1644634..1645041	+	135	152970035	-	KPN_01482	-	hypothetical protein
1454	 57.43	0	1645078..1645683	-	201	152970036	acpD	KPN_01483	-	azoreductase
1455	 59.95	0	1645888..1649790	+	1300	152970037	hrpA	KPN_01484	-	ATP-dependent RNA helicase HrpA
1456	 59.56	0	1649851..1650525	-	224	152970038	-	KPN_01485	-	putative O-methyltransferase
1457	 63.55	0	1650526..1651905	-	459	152970039	-	KPN_01486	-	putative outer membrane efflux protein
1458	 60.96	0	1651902..1652987	-	361	152970040	-	KPN_01487	-	putative multidrug resistance efflux pump
1459	 60.86	0	1653016..1654668	-	550	152970041	-	KPN_01488	-	major facilitator superfamily permease
1460	 59.95	0	1654668..1655099	-	143	152970042	-	KPN_01489	-	putative regulatory protein  MarR
1461	 53.11	0	1655207..1656106	-	299	152970043	-	KPN_01490	-	LysR family transcriptional regulator
1462	 57.29	0	1656315..1657253	+	312	152970044	-	KPN_01491	-	oxidoreductase
1463	 60.24	0	1657409..1658683	-	424	152970045	-	KPN_01492	-	putative glutamic dehyrogenase-like protein
1464	 63.76	+1	1659212..1660417	+	401	152970046	-	KPN_01493	-	bifunctional succinylornithine transaminase/acetylornithine transaminase
1465	 62.85	0	1660436..1661458	+	340	152970047	-	KPN_01494	-	arginine succinyltransferase
1466	 63.24	0	1662936..1664276	+	446	152970048	-	KPN_01496	-	succinylarginine dihydrolase
1467	 65.79	+1	1664260..1665282	+	340	152970049	-	KPN_01497	-	succinylglutamate desuccinylase
1468	 61.64	0	1665292..1666722	+	476	152970050	-	KPN_01498	-	D-alanine/D-serine/glycine transport protein
1469	 61.61	0	1666929..1668254	-	441	152970051	-	KPN_01499	-	shikimate and dehydroshikimate transport protein
1470	 68.54	+1	1668635..1669435	+	266	152970052	ydcF	KPN_01500	-	hypothetical protein
1471	 61.94	0	1669657..1671072	+	471	152970053	aldA	KPN_01501	-	aldehyde dehydrogenase A
1472	 57.56	0	1671121..1672119	-	332	152970054	gapA	KPN_01502	-	glyceraldehyde-3-phosphate dehydrogenase
1473	 51.57	-1	1672402..1672560	+	52	152970055	yqaE	KPN_01503	-	YqaE family transport protein
1474	 54.96	0	1672595..1672987	-	130	152970056	ydfO	KPN_01504	-	hypothetical protein
1475	 52.99	0	1673238..1673471	-	77	152970057	yedF	KPN_01505	-	hypothetical protein
1476	 62.86	0	1673468..1674676	-	402	152970058	yedE	KPN_01506	-	putative inner membrane protein
1477	 64.97	+1	1674780..1675133	-	117	152970059	-	KPN_01507	-	hypothetical protein
1478	 49.58	-1	1675370..1675849	+	159	152970060	-	KPN_01508	-	hypothetical protein
1479	 56.86	0	1675919..1676122	-	67	152970061	-	KPN_01509	-	hypothetical protein
1480	 60.06	0	1676434..1677462	+	342	152970062	-	KPN_01510	-	putative Mg2+ and Co2+ transporters
1481	 62.32	0	1677476..1678648	-	390	152970063	malY	KPN_01511	-	bifunctional PLP-dependent beta-cystathionase; repressor of maltose regulon through interaction with MalT
1482	 60.70	0	1678700..1680292	-	530	152970064	malX	KPN_01512	-	bifunctional maltose and glucose-specific PTS system components IICB
1483	 64.63	+1	1680387..1681415	+	342	152970065	malI	KPN_01513	-	DNA-binding transcriptional repressor MalI
1484	 61.98	0	1681455..1683032	-	525	152970066	ydgA	KPN_01514	-	hypothetical protein
1485	 61.83	0	1683119..1684297	-	392	152970067	manA	KPN_01515	-	mannose-6-phosphate isomerase
1486	 59.26	0	1684499..1686145	+	548	152970068	fumA	KPN_01516	-	fumarase A (fumarate hydratase class I), aerobic isozyme
1487	 61.10	0	1686485..1687885	+	466	152970069	fumC	KPN_01517	-	fumarate hydratase
1488	 62.27	0	1687875..1688807	-	310	152970070	tus	KPN_01518	-	DNA replication terminus site-binding protein
1489	 59.98	0	1688883..1690184	-	433	152970071	rstB	KPN_01519	-	sensor protein RstB
1490	 54.27	0	1690440..1690802	-	120	152970072	-	KPN_01520	-	hypothetical protein
1491	 58.75	0	1691045..1691764	-	239	152970073	rstA	KPN_01521	-	DNA-binding transcriptional regulator RstA
1492	 58.93	0	1691893..1692228	+	111	152970074	ydgC	KPN_01522	-	hypothetical protein
1493	 61.00	0	1692225..1692947	-	240	152970075	ydgB	KPN_01523	-	short chain dehydrogenase
1494	 60.95	0	1692984..1694366	-	460	152970076	ydgI	KPN_01524	-	putative arginine/ornithine antiporter
1495	 57.83	0	1694544..1695494	-	316	152970077	ydgH	KPN_01525	-	hypothetical protein
1496	 58.32	0	1696001..1697545	+	514	152970078	pntA	KPN_01526	-	NAD(P) transhydrogenase subunit alpha
1497	 58.53	0	1697556..1698944	+	462	152970079	pntB	KPN_01527	-	pyridine nucleotide transhydrogenase
1498	 53.97	0	1699093..1699281	+	62	152970080	ydiH	KPN_01528	-	hypothetical protein
1499	 58.15	0	1699390..1700340	-	316	152970081	ydaA	KPN_01529	-	universal stress protein UspE
1500	 56.43	0	1700479..1700937	-	152	152970082	fnr	KPN_01530	-	transcriptional regulation of aerobic, anaerobic respiration, osmotic balance
1501	 61.36	0	1701426..1701953	-	175	152970083	ogt	KPN_01531	-	O-6-alkylguanine-DNA:cysteine-protein methyltransferase
1502	 58.94	0	1702425..1703951	-	508	152970084	abgT	KPN_01532	-	putative aminobenzoyl-glutamate transporter
1503	 63.62	0	1704071..1705516	-	481	152970085	abgB	KPN_01533	-	aminobenzoyl-glutamate utilization protein
1504	 66.74	+1	1705516..1706826	-	436	152970086	abgA	KPN_01534	-	aminobenzoyl-glutamate utilization protein
1505	 59.74	0	1706993..1707901	+	302	152970087	abgR	KPN_01535	-	putative DNA-binding transcriptional regulator
1506	 60.82	0	1708003..1708566	+	187	152970088	ydaL	KPN_01536	-	hypothetical protein
1507	 64.31	+1	1708563..1709369	-	268	152970089	-	KPN_01537	-	IclR family transcriptional regulator
1508	 62.59	0	1709539..1710225	+	228	152970090	-	KPN_01538	-	acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
1509	 63.62	0	1710236..1710892	+	218	152970091	-	KPN_01539	-	acetyl-CoA:acetoacetyl-CoA transferase beta subunit
1510	 66.67	+1	1710900..1712105	+	401	152970092	-	KPN_01540	-	acetyl-CoA acetyltransferase
1511	 67.11	+1	1712115..1713467	+	450	152970093	-	KPN_01541	-	putative fumarate lyase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.