IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1372	 51.72	-1	1562496..1563251	+	251	152969954	-	KPN_01401	-	putative antitermination protein
1373	 43.15	-2	1563626..1564012	-	128	152969955	-	KPN_01402	-	hypothetical protein
1374	 49.49	-1	1564704..1565099	+	131	152969956	-	KPN_01403	-	hypothetical protein
1375	 51.42	-1	1565086..1565367	+	93	152969957	-	KPN_01404	-	hypothetical protein
1376	 54.70	0	1565367..1565993	+	208	152969958	-	KPN_01405	-	putative glycoside hydrolase
1377	 55.93	0	1566001..1566177	+	58	152969959	-	KPN_01406	-	hypothetical protein
1378	 39.34	-2	1566199..1566381	-	60	152969960	-	KPN_01407	-	hypothetical protein
1379	 46.63	-1	1567215..1567733	+	172	152969961	-	KPN_01408	-	hypothetical protein
1380	 39.95	-2	1567798..1568175	-	125	152969962	-	KPN_01409	-	hypothetical protein
1381	 47.92	-1	1568492..1568635	+	47	152969963	-	KPN_01410	-	hypothetical protein
1382	 38.38	-2	1569160..1569654	-	164	152969964	-	KPN_01411	-	hypothetical protein
1383	 55.22	0	1569749..1570753	+	334	152969965	-	KPN_01412	-	hypothetical protein
1384	 52.34	0	1570731..1572035	+	434	152969966	-	KPN_01413	-	hypothetical protein
1385	 52.42	0	1572040..1573464	+	474	152969967	-	KPN_01414	-	hypothetical protein
1386	 54.09	0	1573535..1574560	+	341	152969968	-	KPN_01415	-	hypothetical protein
1387	 52.29	0	1574667..1575431	+	254	152969969	-	KPN_01416	-	hypothetical protein
1388	 54.23	0	1575519..1576298	+	259	152969970	-	KPN_01417	-	hypothetical protein
1389	 57.50	0	1576295..1576654	+	119	152969971	-	KPN_01418	-	hypothetical protein
1390	 56.34	0	1576695..1576907	+	70	152969972	-	KPN_01419	-	hypothetical protein
1391	 49.15	-1	1576911..1577321	+	136	152969973	-	KPN_01420	-	hypothetical protein
1392	 50.17	-1	1577323..1577619	+	98	152969974	-	KPN_01421	-	hypothetical protein
1393	 56.77	0	1577591..1577974	+	127	152969975	-	KPN_01422	-	hypothetical protein
1394	 53.62	0	1577976..1578527	+	183	152969976	-	KPN_01423	-	hypothetical protein
1395	 54.20	0	1578524..1578916	+	130	152969977	-	KPN_01424	-	putative electron transfer flavoprotein subunit beta
1396	 54.66	0	1578940..1579872	+	310	152969978	-	KPN_01425	-	putative membrane component of transport system
1397	 51.72	-1	1579900..1580394	+	164	152969979	-	KPN_01426	-	hypothetical protein
1398	 46.07	-2	1581588..1581956	+	122	152969980	-	KPN_01427	-	hypothetical protein
1399	 49.78	-1	1582029..1585142	+	1037	152969981	-	KPN_01428	-	putative phage tail protein
1400	 34.23	-2	1585226..1585561	+	111	152969982	-	KPN_01429	-	hypothetical protein
1401	 51.90	-1	1585877..1586350	+	157	152969983	-	KPN_01430	-	alkanesulfonate ABC transporter membrane protein
1402	 49.28	-1	1586337..1586819	+	160	152969984	-	KPN_01431	-	arsenical resistance transcriptional repressor
1403	 54.16	0	1587206..1590292	+	1028	152969985	-	KPN_01432	-	putative kinase
1404	 50.63	-1	1590369..1593005	+	878	152969986	-	KPN_01433	-	flagellar biosynthesis, cell-distal portion of basal-body rod
1405	 51.86	-1	1593005..1593862	+	285	152969987	-	KPN_01434	-	hypothetical protein
1406	 45.98	-2	1593924..1594097	+	57	152969988	-	KPN_01435	-	RecA regulator RecX
1407	 56.99	0	1594184..1594462	+	92	152969989	-	KPN_01436	-	putative invertase
1408	 43.65	-2	1594546..1594962	+	138	152969990	-	KPN_01437	-	hypothetical protein
1409	 51.90	-1	1595512..1595931	+	139	152969991	umuD	KPN_01438	-	DNA polymerase V subunit UmuD
1410	 53.63	0	1596110..1597198	+	362	152969992	umuC	KPN_01439	-	DNA polymerase V subunit UmuC
1411	 46.39	-1	1597377..1598762	-	461	152969993	-	KPN_01440	-	hypothetical protein
1412	 50.80	-1	1598767..1599264	-	165	152969994	-	KPN_01441	-	hypothetical protein
1413	 39.57	-2	1599453..1600109	-	218	152969995	-	KPN_01442	-	hypothetical protein
1414	 55.01	0	1600280..1600957	-	225	152969996	-	KPN_01443	-	hypothetical protein
1415	 53.52	0	1601591..1602016	-	141	152969997	ynaF	KPN_01444	-	hypothetical protein
1416	 52.21	0	1602463..1603617	-	384	152969998	ompN	KPN_01445	-	outer membrane pore protein N, non-specific
1417	 61.73	0	1603974..1607501	-	1175	152969999	ydbK	KPN_01446	-	putative oxidoreductase, Fe-S subunit
1418	 66.27	+1	1607876..1608127	+	83	152970000	-	KPN_01447	-	hypothetical protein
1419	 58.73	0	1608173..1608613	-	146	152970001	hslJ	KPN_01448	-	heat shock protein hslJ
1420	 58.18	0	1608736..1609725	-	329	152970002	ldhA	KPN_01449	-	D-lactate dehydrogenase
1421	 60.28	0	1609873..1610373	-	166	152970003	-	KPN_01450	-	hypothetical protein
1422	 63.60	0	1610580..1613219	+	879	152970004	ydbH	KPN_01451	-	hypothetical protein
1423	 50.54	-1	1613216..1613401	+	61	152970005	ynbE	KPN_01452	-	hypothetical protein
1424	 62.96	0	1613409..1613732	+	107	152970006	ydbL	KPN_01453	-	hypothetical protein
1425	 63.01	0	1613733..1614635	-	300	152970007	feaR	KPN_01454	-	DNA-binding transcriptional activator FeaR
1426	 65.67	+1	1614871..1616370	+	499	152970008	feaB	KPN_01455	-	phenylacetaldehyde dehydrogenase
1427	 67.56	+1	1616495..1617385	+	296	152970009	-	KPN_01456	-	2-dehydropantoate 2-reductase
1428	 63.01	0	1617403..1618140	-	245	152970010	-	KPN_01457	-	hypothetical protein
1429	 58.97	0	1618140..1618970	-	276	152970011	-	KPN_01458	-	extracellular solute-binding family protein 3
1430	 64.03	+1	1618994..1619866	-	290	152970012	-	KPN_01459	-	putative dioxygenase
1431	 59.57	0	1619893..1621413	-	506	152970013	-	KPN_01460	-	putative ATP-binding component of a transport system
1432	 56.39	0	1621902..1622816	+	304	152970014	-	KPN_01461	-	LysR family transcriptional regulator
1433	 65.48	+1	1622986..1624245	+	419	152970015	-	KPN_01462	-	hypothetical protein
1434	 59.31	0	1624270..1624704	+	144	152970016	-	KPN_01463	-	putative endoribonuclease
1435	 65.98	+1	1625368..1626525	+	385	152970017	-	KPN_01464	-	acetylornithine deacetylase
1436	 64.10	+1	1626550..1627368	+	272	152970018	-	KPN_01465	-	putative phytanoyl-CoA dioxygenase
1437	 68.39	+1	1627391..1628374	+	327	152970019	-	KPN_01466	-	putative oxidoreductase
1438	 57.01	0	1628377..1630644	-	755	152970020	tynA	KPN_01467	-	tyramine oxidase
1439	 61.61	0	1631108..1633165	-	685	152970021	paaZ	KPN_01468	-	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase
1440	 60.54	0	1633452..1634381	+	309	152970022	paaA	KPN_01469	-	phenylacetate-CoA oxygenase subunit PaaA
1441	 55.21	0	1634393..1634680	+	95	152970023	paaB	KPN_01470	-	phenylacetate-CoA oxygenase subunit PaaB
1442	 61.11	0	1634688..1635443	+	251	152970024	paaC	KPN_01471	-	phenylacetic acid degradation protein
1443	 60.84	0	1635455..1635952	+	165	152970025	paaD	KPN_01472	-	phenylacetic acid degradation protein
1444	 61.62	0	1635960..1637030	+	356	152970026	paaE	KPN_01473	-	phenylacetic acid degradation NADH oxidoreductase
1445	 62.63	0	1637027..1637794	+	255	152970027	paaF	KPN_01474	-	enoyl-CoA hydratase-isomerase
1446	 64.39	+1	1637797..1638585	+	262	152970028	paaG	KPN_01475	-	enoyl-CoA hydratase
1447	 62.32	0	1638586..1640010	+	474	152970029	paaH	KPN_01476	-	3-hydroxybutyryl-CoA dehydrogenase
1448	 56.97	0	1640000..1640422	+	140	152970030	paaI	KPN_01477	-	phenylacetic acid degradation protein
1449	 64.51	+1	1640422..1641627	+	401	152970031	paaJ	KPN_01478	-	beta-ketoadipyl CoA thiolase
1450	 58.47	0	1641654..1642970	+	438	152970032	paaK	KPN_01479	-	phenylacetate-CoA ligase
1451	 60.19	0	1643090..1644016	+	308	152970033	paaX	KPN_01480	-	transcriptional repressor for phenylacetic acid degradation
1452	 59.80	0	1644026..1644622	+	198	152970034	paaY	KPN_01481	-	phenylacetic acid degradation protein; putative transferase
1453	 55.15	0	1644634..1645041	+	135	152970035	-	KPN_01482	-	hypothetical protein
1454	 57.43	0	1645078..1645683	-	201	152970036	acpD	KPN_01483	-	azoreductase
1455	 59.95	0	1645888..1649790	+	1300	152970037	hrpA	KPN_01484	-	ATP-dependent RNA helicase HrpA
1456	 59.56	0	1649851..1650525	-	224	152970038	-	KPN_01485	-	putative O-methyltransferase
1457	 63.55	0	1650526..1651905	-	459	152970039	-	KPN_01486	-	putative outer membrane efflux protein
1458	 60.96	0	1651902..1652987	-	361	152970040	-	KPN_01487	-	putative multidrug resistance efflux pump
1459	 60.86	0	1653016..1654668	-	550	152970041	-	KPN_01488	-	major facilitator superfamily permease
1460	 59.95	0	1654668..1655099	-	143	152970042	-	KPN_01489	-	putative regulatory protein  MarR
1461	 53.11	0	1655207..1656106	-	299	152970043	-	KPN_01490	-	LysR family transcriptional regulator
1462	 57.29	0	1656315..1657253	+	312	152970044	-	KPN_01491	-	oxidoreductase
1463	 60.24	0	1657409..1658683	-	424	152970045	-	KPN_01492	-	putative glutamic dehyrogenase-like protein
1464	 63.76	+1	1659212..1660417	+	401	152970046	-	KPN_01493	-	bifunctional succinylornithine transaminase/acetylornithine transaminase
1465	 62.85	0	1660436..1661458	+	340	152970047	-	KPN_01494	-	arginine succinyltransferase
1466	 63.24	0	1662936..1664276	+	446	152970048	-	KPN_01496	-	succinylarginine dihydrolase
1467	 65.79	+1	1664260..1665282	+	340	152970049	-	KPN_01497	-	succinylglutamate desuccinylase
1468	 61.64	0	1665292..1666722	+	476	152970050	-	KPN_01498	-	D-alanine/D-serine/glycine transport protein
1469	 61.61	0	1666929..1668254	-	441	152970051	-	KPN_01499	-	shikimate and dehydroshikimate transport protein
1470	 68.54	+1	1668635..1669435	+	266	152970052	ydcF	KPN_01500	-	hypothetical protein
1471	 61.94	0	1669657..1671072	+	471	152970053	aldA	KPN_01501	-	aldehyde dehydrogenase A
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.