IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1338	 58.33	0	1532933..1533412	-	159	152969920	-	KPN_01367	-	regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
1339	 60.29	0	1533747..1535126	+	459	152969921	-	KPN_01368	-	aromatic amino acid transport protein
1340	 52.88	0	1535377..1536123	+	248	152969922	-	KPN_01369	-	hypothetical protein
1341	 45.64	-2	1536236..1536430	-	64	152969923	-	KPN_01370	-	hypothetical protein
1342	 62.83	0	1536667..1537761	-	364	152969924	-	KPN_01371	-	putative oxidoreductase
1343	 62.53	0	1537748..1538497	-	249	152969925	-	KPN_01372	-	DeoR transcriptional regulator
1344	 61.08	0	1538771..1539754	+	327	152969926	ydaN	KPN_01373	-	zinc transporter
1345	 62.52	0	1540280..1541653	+	457	152969927	dbpA	KPN_01374	-	ATP-dependent RNA helicase DbpA
1346	 55.66	0	1541699..1542634	-	311	152969928	ydaO	KPN_01375	-	C32 tRNA thiolase
1347	 46.25	-2	1542683..1543921	-	412	152969929	-	KPN_01376	-	putative transposase/integrase
1348	 46.01	-2	1543922..1544134	-	70	152969930	-	KPN_01377	-	putative excisionase
1349	 55.56	0	1544199..1544459	-	86	152969931	-	KPN_01378	-	hypothetical protein
1350	 58.58	0	1544446..1544754	-	102	152969932	-	KPN_01379	-	hypothetical protein
1351	 53.27	0	1544751..1545362	-	203	152969933	-	KPN_01380	-	hypothetical protein
1352	 50.48	-1	1545355..1545564	-	69	152969934	-	KPN_01381	-	hypothetical protein
1353	 50.20	-1	1545742..1546743	-	333	152969935	-	KPN_01382	-	putative entero exodeoxyribonuclease VIII
1354	 53.58	0	1546756..1549872	-	1038	152969936	-	KPN_01383	-	putative entero exodeoxyribonuclease VIII
1355	 53.50	0	1550010..1550366	-	118	152969937	-	KPN_01384	-	hypothetical protein
1356	 47.57	-1	1550662..1550970	-	102	152969938	-	KPN_01385	-	regulatory protein
1357	 38.51	-2	1551505..1551678	-	57	152969939	-	KPN_01386	-	hypothetical protein
1358	 39.21	-2	1551714..1552598	-	294	152969940	-	KPN_01387	-	hypothetical protein
1359	 56.56	0	1553547..1554011	+	154	152969941	-	KPN_01388	-	hypothetical protein
1360	 53.46	0	1554141..1554935	+	264	152969942	-	KPN_01389	-	hypothetical protein
1361	 51.69	-1	1554953..1555840	+	295	152969943	-	KPN_01390	-	hypothetical protein
1362	 54.00	0	1555843..1556592	+	249	152969944	-	KPN_01391	-	putative replication protein
1363	 47.26	-1	1556965..1557165	+	66	152969945	-	KPN_01392	-	hypothetical protein
1364	 47.62	-1	1557162..1557413	+	83	152969946	-	KPN_01393	-	hypothetical protein
1365	 52.22	0	1557410..1557679	+	89	152969947	-	KPN_01394	-	hypothetical protein
1366	 58.06	0	1557676..1559535	+	619	152969948	-	KPN_01395	-	putative site-specific DNA methylase
1367	 45.27	-2	1559689..1560132	+	147	152969949	-	KPN_01396	-	putative N-acetyltransferase
1368	 43.94	-2	1560133..1560264	+	43	152969950	-	KPN_01397	-	hypothetical protein
1369	 49.15	-1	1560612..1560845	+	77	152969951	-	KPN_01398	-	hypothetical protein
1370	 51.59	-1	1560881..1561477	+	198	152969952	-	KPN_01399	-	hypothetical protein
1371	 51.30	-1	1561979..1562323	+	114	152969953	-	KPN_01400	-	hypothetical protein
1372	 51.72	-1	1562496..1563251	+	251	152969954	-	KPN_01401	-	putative antitermination protein
1373	 43.15	-2	1563626..1564012	-	128	152969955	-	KPN_01402	-	hypothetical protein
1374	 49.49	-1	1564704..1565099	+	131	152969956	-	KPN_01403	-	hypothetical protein
1375	 51.42	-1	1565086..1565367	+	93	152969957	-	KPN_01404	-	hypothetical protein
1376	 54.70	0	1565367..1565993	+	208	152969958	-	KPN_01405	-	putative glycoside hydrolase
1377	 55.93	0	1566001..1566177	+	58	152969959	-	KPN_01406	-	hypothetical protein
1378	 39.34	-2	1566199..1566381	-	60	152969960	-	KPN_01407	-	hypothetical protein
1379	 46.63	-1	1567215..1567733	+	172	152969961	-	KPN_01408	-	hypothetical protein
1380	 39.95	-2	1567798..1568175	-	125	152969962	-	KPN_01409	-	hypothetical protein
1381	 47.92	-1	1568492..1568635	+	47	152969963	-	KPN_01410	-	hypothetical protein
1382	 38.38	-2	1569160..1569654	-	164	152969964	-	KPN_01411	-	hypothetical protein
1383	 55.22	0	1569749..1570753	+	334	152969965	-	KPN_01412	-	hypothetical protein
1384	 52.34	0	1570731..1572035	+	434	152969966	-	KPN_01413	-	hypothetical protein
1385	 52.42	0	1572040..1573464	+	474	152969967	-	KPN_01414	-	hypothetical protein
1386	 54.09	0	1573535..1574560	+	341	152969968	-	KPN_01415	-	hypothetical protein
1387	 52.29	0	1574667..1575431	+	254	152969969	-	KPN_01416	-	hypothetical protein
1388	 54.23	0	1575519..1576298	+	259	152969970	-	KPN_01417	-	hypothetical protein
1389	 57.50	0	1576295..1576654	+	119	152969971	-	KPN_01418	-	hypothetical protein
1390	 56.34	0	1576695..1576907	+	70	152969972	-	KPN_01419	-	hypothetical protein
1391	 49.15	-1	1576911..1577321	+	136	152969973	-	KPN_01420	-	hypothetical protein
1392	 50.17	-1	1577323..1577619	+	98	152969974	-	KPN_01421	-	hypothetical protein
1393	 56.77	0	1577591..1577974	+	127	152969975	-	KPN_01422	-	hypothetical protein
1394	 53.62	0	1577976..1578527	+	183	152969976	-	KPN_01423	-	hypothetical protein
1395	 54.20	0	1578524..1578916	+	130	152969977	-	KPN_01424	-	putative electron transfer flavoprotein subunit beta
1396	 54.66	0	1578940..1579872	+	310	152969978	-	KPN_01425	-	putative membrane component of transport system
1397	 51.72	-1	1579900..1580394	+	164	152969979	-	KPN_01426	-	hypothetical protein
1398	 46.07	-2	1581588..1581956	+	122	152969980	-	KPN_01427	-	hypothetical protein
1399	 49.78	-1	1582029..1585142	+	1037	152969981	-	KPN_01428	-	putative phage tail protein
1400	 34.23	-2	1585226..1585561	+	111	152969982	-	KPN_01429	-	hypothetical protein
1401	 51.90	-1	1585877..1586350	+	157	152969983	-	KPN_01430	-	alkanesulfonate ABC transporter membrane protein
1402	 49.28	-1	1586337..1586819	+	160	152969984	-	KPN_01431	-	arsenical resistance transcriptional repressor
1403	 54.16	0	1587206..1590292	+	1028	152969985	-	KPN_01432	-	putative kinase
1404	 50.63	-1	1590369..1593005	+	878	152969986	-	KPN_01433	-	flagellar biosynthesis, cell-distal portion of basal-body rod
1405	 51.86	-1	1593005..1593862	+	285	152969987	-	KPN_01434	-	hypothetical protein
1406	 45.98	-2	1593924..1594097	+	57	152969988	-	KPN_01435	-	RecA regulator RecX
1407	 56.99	0	1594184..1594462	+	92	152969989	-	KPN_01436	-	putative invertase
1408	 43.65	-2	1594546..1594962	+	138	152969990	-	KPN_01437	-	hypothetical protein
1409	 51.90	-1	1595512..1595931	+	139	152969991	umuD	KPN_01438	-	DNA polymerase V subunit UmuD
1410	 53.63	0	1596110..1597198	+	362	152969992	umuC	KPN_01439	-	DNA polymerase V subunit UmuC
1411	 46.39	-1	1597377..1598762	-	461	152969993	-	KPN_01440	-	hypothetical protein
1412	 50.80	-1	1598767..1599264	-	165	152969994	-	KPN_01441	-	hypothetical protein
1413	 39.57	-2	1599453..1600109	-	218	152969995	-	KPN_01442	-	hypothetical protein
1414	 55.01	0	1600280..1600957	-	225	152969996	-	KPN_01443	-	hypothetical protein
1415	 53.52	0	1601591..1602016	-	141	152969997	ynaF	KPN_01444	-	hypothetical protein
1416	 52.21	0	1602463..1603617	-	384	152969998	ompN	KPN_01445	-	outer membrane pore protein N, non-specific
1417	 61.73	0	1603974..1607501	-	1175	152969999	ydbK	KPN_01446	-	putative oxidoreductase, Fe-S subunit
1418	 66.27	+1	1607876..1608127	+	83	152970000	-	KPN_01447	-	hypothetical protein
1419	 58.73	0	1608173..1608613	-	146	152970001	hslJ	KPN_01448	-	heat shock protein hslJ
1420	 58.18	0	1608736..1609725	-	329	152970002	ldhA	KPN_01449	-	D-lactate dehydrogenase
1421	 60.28	0	1609873..1610373	-	166	152970003	-	KPN_01450	-	hypothetical protein
1422	 63.60	0	1610580..1613219	+	879	152970004	ydbH	KPN_01451	-	hypothetical protein
1423	 50.54	-1	1613216..1613401	+	61	152970005	ynbE	KPN_01452	-	hypothetical protein
1424	 62.96	0	1613409..1613732	+	107	152970006	ydbL	KPN_01453	-	hypothetical protein
1425	 63.01	0	1613733..1614635	-	300	152970007	feaR	KPN_01454	-	DNA-binding transcriptional activator FeaR
1426	 65.67	+1	1614871..1616370	+	499	152970008	feaB	KPN_01455	-	phenylacetaldehyde dehydrogenase
1427	 67.56	+1	1616495..1617385	+	296	152970009	-	KPN_01456	-	2-dehydropantoate 2-reductase
1428	 63.01	0	1617403..1618140	-	245	152970010	-	KPN_01457	-	hypothetical protein
1429	 58.97	0	1618140..1618970	-	276	152970011	-	KPN_01458	-	extracellular solute-binding family protein 3
1430	 64.03	+1	1618994..1619866	-	290	152970012	-	KPN_01459	-	putative dioxygenase
1431	 59.57	0	1619893..1621413	-	506	152970013	-	KPN_01460	-	putative ATP-binding component of a transport system
1432	 56.39	0	1621902..1622816	+	304	152970014	-	KPN_01461	-	LysR family transcriptional regulator
1433	 65.48	+1	1622986..1624245	+	419	152970015	-	KPN_01462	-	hypothetical protein
1434	 59.31	0	1624270..1624704	+	144	152970016	-	KPN_01463	-	putative endoribonuclease
1435	 65.98	+1	1625368..1626525	+	385	152970017	-	KPN_01464	-	acetylornithine deacetylase
1436	 64.10	+1	1626550..1627368	+	272	152970018	-	KPN_01465	-	putative phytanoyl-CoA dioxygenase
1437	 68.39	+1	1627391..1628374	+	327	152970019	-	KPN_01466	-	putative oxidoreductase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.