IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.72   STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
944	 53.70	0	1067338..1068093	-	251	152983049	ccmC	mma_0944	-	heme exporter protein CcmC
945	 51.19	0	1068110..1068781	-	223	152983050	ccmB	mma_0945	-	heme ABC export system, permease protein CcmB
946	 52.65	0	1068778..1069455	-	225	152983051	ccmA	mma_0946	-	cytochrome c biogenesis protein CcmA
947	 50.69	0	1069524..1070030	-	168	152983052	msrA1	mma_0947	-	methionine sulfoxide reductase A
948	 50.68	0	1070032..1070475	-	147	152983053	msrB1	mma_0948	-	methionine sulfoxide reductase B
949	 56.28	0	1070553..1071467	-	304	152983212	-	mma_0949	-	zinc-binding oxidoreductase
950	 50.78	0	1071709..1072287	-	192	152983454	-	mma_0950	-	cytochrome P460
951	 47.57	-1	1072334..1072930	-	198	152983335	cyp	mma_0951	-	cytochrome P460 precursor
952	 49.17	-1	1073228..1073770	-	180	152983054	cybB2	mma_0952	-	cytochrome B561
953	 43.55	-2	1073906..1074874	-	322	152983055	-	mma_0953	-	hypothetical protein
954	 49.96	-1	1074881..1076305	-	474	152983056	-	mma_0954	-	mercuric reductase
955	 46.88	-1	1076591..1078318	-	575	152982911	kefB1	mma_0955	-	glutathione-regulated potassium-efflux system protein kefB
956	 46.85	-1	1078580..1079578	-	332	152983057	-	mma_0956	-	AraC family transcriptional regulator
957	 39.82	-2	1080967..1081413	-	148	152983336	-	mma_0957	-	hypothetical protein
958	 42.52	-2	1081660..1082127	-	155	152983215	-	mma_0958	-	hypothetical protein
959	 50.59	-1	1082599..1083525	+	308	152983214	-	mma_0959	-	transcriptional regulator
960	 44.92	-2	1084105..1085709	+	534	152983213	-	mma_0960	-	hypothetical protein
961	 50.11	-1	1085666..1086571	+	301	152983058	-	mma_0961	-	transposase
962	 45.69	-2	1086572..1087291	+	239	152983337	-	mma_0962	-	hypothetical protein
963	 48.81	-1	1087538..1088500	+	320	152983216	-	mma_0963	-	diguanylate cyclase
964	 50.93	0	1088597..1089568	-	323	152983217	-	mma_0964	-	AraC family transcriptional regulator
965	 55.77	0	1089748..1090665	-	305	152983218	-	mma_0965	-	hypothetical protein
966	 50.47	-1	1090758..1092146	-	462	152980459	gor	mma_0966	-	glutathione reductase
967	 48.44	-1	1092287..1092736	-	149	152982912	-	mma_0967	-	acetyltransferase
968	 48.64	-1	1092815..1093291	-	158	152983219	-	mma_0968	-	hypothetical protein
969	 51.60	0	1093282..1093905	-	207	152983059	acpD2	mma_0969	-	acyl carrier protein phosphodiesterase
970	 53.36	0	1093965..1094663	-	232	152981682	gst3	mma_0970	-	glutathione S-transferase
971	 50.46	-1	1094690..1095232	-	180	152983060	mip	mma_0971	-	macrophage infectivity potentiator-related protein
972	 50.35	-1	1095274..1095984	-	236	152983220	-	mma_0972	-	short-chain dehydrogenase/reductase SDR
973	 50.92	0	1096145..1096690	-	181	152982018	-	mma_0973	-	hypothetical protein
974	 53.92	0	1096926..1097882	-	318	152983221	-	mma_0974	-	AraC family transcriptional regulator
975	 55.19	0	1098113..1098748	-	211	152982913	noxC	mma_0975	-	NADH oxidase
976	 49.07	-1	1098794..1099225	-	143	152983222	-	mma_0976	-	hypothetical protein
977	 48.99	-1	1099318..1099662	-	114	152983223	-	mma_0977	-	hypothetical protein
978	 50.14	-1	1099974..1101383	+	469	152983061	-	mma_0978	-	GntR family transcriptional regulator
979	 46.77	-1	1101437..1101823	-	128	152983062	-	mma_0979	-	uroporphyrin-III C-methyltransferase
980	 48.55	-1	1101846..1102430	-	194	152983063	-	mma_0980	-	uracil-DNA glycosylase
981	 50.75	0	1102600..1103064	+	154	152983453	-	mma_0981	-	hypothetical protein
982	 50.45	-1	1103135..1103911	-	258	152982543	-	mma_0982	-	hypothetical protein
983	 47.89	-1	1104151..1105359	+	402	152983452	-	mma_0983	-	hypothetical protein
984	 44.74	-2	1106007..1106690	+	227	152983451	-	mma_0984	-	hypothetical protein
985	 42.34	-2	1107003..1107224	+	73	152983225	alpA	mma_0985	-	prophage cp4-57 regulatory protein AlpA
986	 45.66	-2	1107984..1109435	+	483	152983224	-	mma_0986	-	hypothetical protein
987	 46.77	-1	1110697..1111269	-	190	152983064	radC1	mma_0987	-	DNA repair protein RadC
988	 49.57	-1	1111390..1112553	-	387	152983449	-	mma_0988	-	hypothetical protein
989	 47.84	-1	1112630..1113091	-	153	152983448	-	mma_0989	-	hypothetical protein
990	 53.33	0	1113111..1113455	-	114	152983226	-	mma_0990	-	hypothetical protein
991	 48.52	-1	1113553..1113789	+	78	152983227	hsdS	mma_0991	-	subunit S of type I restriction-modification system
992	 49.84	-1	1113801..1114757	-	318	152982914	-	mma_0992	-	hypothetical protein
993	 52.42	0	1114894..1115286	-	130	152983338	-	mma_0993	-	hypothetical protein
994	 47.27	-1	1115491..1116774	-	427	152983228	-	mma_0994	-	hypothetical protein
995	 53.26	0	1116829..1117596	-	255	152982915	-	mma_0995	-	hypothetical protein
996	 48.72	-1	1117583..1118011	-	142	152983447	-	mma_0996	-	hypothetical protein
997	 51.17	0	1118008..1118607	-	199	152982916	-	mma_0997	-	hypothetical protein
998	 56.14	0	1118747..1118974	+	75	152983229	-	mma_0998	-	hypothetical protein
999	 50.24	-1	1119071..1119892	+	273	152983065	-	mma_0999	-	hypothetical protein
1000	 52.30	0	1119905..1120816	+	303	152983066	-	mma_1000	-	hypothetical protein
1001	 48.28	-1	1120826..1121521	+	231	152983067	-	mma_1001	-	hypothetical protein
1002	 47.25	-1	1121634..1122725	+	363	152983446	-	mma_1002	-	hypothetical protein
1003	 44.44	-2	1122722..1123450	+	242	152983445	-	mma_1003	-	hypothetical protein
1004	 49.75	-1	1123758..1126169	+	803	152983444	-	mma_1004	-	hypothetical protein
1005	 50.69	0	1126126..1127571	+	481	152983443	-	mma_1005	-	hypothetical protein
1006	 53.26	0	1127825..1129114	-	429	152982917	-	mma_1006	-	hypothetical protein
1007	 53.65	0	1129066..1131876	-	936	152982918	-	mma_1007	-	hypothetical protein
1008	 52.46	0	1131876..1132565	-	229	152983339	-	mma_1008	-	hypothetical protein
1009	 52.85	0	1132558..1133787	-	409	152983442	-	mma_1009	-	hypothetical protein
1010	 49.09	-1	1134110..1134820	+	236	152983068	-	mma_1010	-	hypothetical protein
1011	 48.99	-1	1134893..1135435	+	180	152983340	-	mma_1011	-	hypothetical protein
1012	 53.64	0	1136739..1138166	+	475	152983230	-	mma_1012	-	hypothetical protein
1013	 43.31	-2	1138477..1139919	+	480	152983231	-	mma_1013	-	hypothetical protein
1014	 44.57	-2	1139949..1141043	+	364	152983341	-	mma_1014	-	hypothetical protein
1015	 42.50	-2	1141040..1141639	+	199	152983342	-	mma_1015	-	hypothetical protein
1016	 47.72	-1	1142269..1143255	+	328	152983343	-	mma_1016	-	hypothetical protein
1017	 48.47	-1	1143488..1144207	-	239	152982919	-	mma_1017	-	isochorismatase family protein
1018	 49.13	-1	1144271..1144846	-	191	152983069	-	mma_1018	-	TetR family transcriptional regulator
1019	 43.79	-2	1145024..1145587	+	187	152983070	-	mma_1019	-	TetR family transcriptional regulator
1020	 49.54	-1	1145665..1146978	+	437	152983071	fabF2	mma_1020	-	3-oxoacyl-acyl carrier protein synthase II
1021	 44.03	-2	1147382..1148344	+	320	152983072	ssuA2	mma_1021	-	sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA
1022	 46.81	-1	1148354..1149481	+	375	152983073	ssuD2	mma_1022	-	alkanesulfonate monooxygenase
1023	 44.59	-2	1150188..1150631	+	147	152983074	-	mma_1023	-	MarR family transcriptional regulator
1024	 50.09	-1	1150710..1151813	+	367	152983075	-	mma_1024	-	component of multidrug efflux system
1025	 48.94	-1	1151810..1154917	+	1035	152982920	-	mma_1025	-	cation efflux system protein
1026	 48.22	-1	1154914..1156344	+	476	152983076	opmR	mma_1026	-	outer membrane protein
1027	 40.89	-2	1157532..1157981	+	149	152983077	-	mma_1027	-	hypothetical protein
1028	 48.13	-1	1158048..1159865	+	605	152983078	-	mma_1028	-	hypothetical protein
1029	 51.63	0	1159865..1161586	+	573	152983232	-	mma_1029	-	ATP-dependent DNA helicase
1030	 45.35	-2	1161754..1163268	+	504	152983441	-	mma_1030	-	hypothetical protein
1031	 40.71	-2	1163832..1164983	-	383	152983440	-	mma_1031	-	hypothetical protein
1032	 52.69	0	1165687..1166244	+	185	152983079	-	mma_1032	-	transcriptional regulator
1033	 54.79	0	1166341..1167552	-	403	152983080	-	mma_1033	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1034	 52.20	0	1167957..1168889	-	310	152982921	-	mma_1035	-	TetR family transcriptional regulator
1035	 56.11	0	1168714..1169376	+	220	152980078	-	mma_1034	-	hypothetical protein
1036	 55.29	0	1169451..1170206	+	251	152980201	-	mma_1036	-	short-chain dehydrogenase/reductase SDR
1037	 50.64	0	1170301..1170768	-	155	152980442	-	mma_1037	-	hypothetical protein
1038	 54.75	0	1170913..1172196	-	427	152980202	fadL	mma_1038	-	long-chain fatty acid transport protein precursor
1039	 58.43	0	1172703..1173224	-	173	152980368	-	mma_1039	-	hypothetical protein
1040	 54.00	0	1173740..1174915	+	391	152980637	-	mma_1040	-	outer membrane protein (porin)
1041	 54.01	0	1175203..1176585	+	460	152982698	-	mma_1041	-	major facilitator transporter
1042	 42.94	-2	1176718..1176894	-	58	152983344	-	mma_1042	-	hypothetical protein
1043	 57.40	0	1177371..1178093	+	240	152982464	-	mma_1043	-	AraC family transcriptional regulator
54.72	MEAN

4.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.