IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
550	 59.87	+1	623300..624079	+	259	152982386	-	mma_0550	-	short chain dehydrogenase/reductase family oxidoreductase
551	 57.95	0	624114..625088	+	324	152980998	qor2	mma_0551	-	NADPH2:quinone reductase
552	 52.43	0	625323..625940	-	205	152982450	-	mma_0552	-	hypothetical protein
553	 57.14	0	626182..628836	+	884	152980567	pepN	mma_0553	-	aminopeptidase N
554	 55.62	0	628927..629931	+	334	152979833	fbp	mma_0554	-	fructose-1,6-bisphosphatase I
555	 53.66	0	636336..637511	+	391	152980194	atoB	mma_0555	-	acetyl-CoA C-acetyltransferase
556	 53.98	0	637556..638296	+	246	152981402	phbB	mma_0556	-	acetoacetyl-CoA reductase
557	 53.68	0	638354..638992	-	212	152981446	-	mma_0557	-	hypothetical protein
558	 55.95	0	639049..639636	-	195	152979979	-	mma_0558	-	hypothetical protein
559	 56.31	0	639689..639910	-	73	152983202	-	mma_0559	-	hypothetical protein
560	 57.88	0	639940..640212	-	90	152982712	-	mma_0560	-	hypothetical protein
561	 54.26	0	640244..640630	-	128	152981837	-	mma_0561	-	hypothetical protein
562	 57.79	0	640729..642159	-	476	152980617	sbcB	mma_0562	-	exonuclease I
563	 57.76	0	642196..643161	-	321	152982877	-	mma_0563	-	hypothetical protein
564	 54.34	0	643171..644046	-	291	152981680	-	mma_0564	-	signal transduction protein
565	 56.07	0	644043..644363	-	106	152982592	-	mma_0565	-	hypothetical protein
566	 54.03	0	644545..645810	-	421	152982756	-	mma_0566	-	hypothetical protein
567	 53.44	0	645888..646280	-	130	152981506	-	mma_0567	-	hypothetical protein
568	 52.84	0	646352..646756	-	134	152982746	-	mma_0568	-	hypothetical protein
569	 55.50	0	646943..647587	-	214	152981789	rhtB	mma_0569	-	homoserine/homoserine lactone efflux protein
570	 56.44	0	647835..648734	-	299	152981665	penP	mma_0570	-	Beta-lactamase class A
571	 58.66	0	648758..649144	-	128	152982605	-	mma_0571	-	hypothetical protein
572	 52.65	0	649298..650410	+	370	152982895	-	mma_0572	-	IS30 family transposase
573	 61.72	+1	650476..651687	-	403	152982482	-	mma_0573	-	major facilitator transporter
574	 57.56	0	651783..652748	+	321	152981643	-	mma_0574	-	LysR family transcriptional regulator
575	 54.13	0	652745..653119	-	124	152982276	-	mma_0575	-	hypothetical protein
576	 50.21	-1	653133..653612	-	159	152981776	-	mma_0576	-	hypothetical protein
577	 41.25	-2	653609..655870	-	753	152983148	-	mma_0577	-	hypothetical protein
578	 40.07	-2	655883..656713	-	276	152983022	dam	mma_0578	-	DNA adenine methylase
579	 56.95	0	656710..658458	-	582	152980200	glnS	mma_0579	-	glutaminyl-tRNA synthetase
580	 58.92	+1	658665..659426	-	253	152981919	-	mma_0580	-	hypothetical protein
581	 59.66	+1	659601..661199	-	532	152979978	ggt1	mma_0581	-	gamma-glutamyltranspeptidase
582	 59.51	+1	661414..662196	+	260	152980071	glpQ	mma_0582	-	glycerophosphoryl diester phosphodiesterase
583	 56.86	0	662300..664909	+	869	152979781	alaS	mma_0583	-	alanyl-tRNA synthetase
584	 50.44	-1	665161..665388	+	75	152983203	-	mma_0584	-	hypothetical protein
585	 54.93	0	665616..666365	+	249	152979969	etfB	mma_0585	-	electron transfer flavoprotein beta subunit
586	 57.85	0	666428..667357	+	309	152980063	etfA	mma_0586	-	electron transfer flavoprotein alpha subunit
587	 57.90	0	667498..669288	+	596	152981179	-	mma_0587	-	acyl-CoA dehydrogenase
588	 58.07	0	669295..669678	-	127	152982846	-	mma_0588	-	hypothetical protein
589	 60.74	+1	669675..671126	-	483	152980667	amtB2	mma_0589	-	ammonium transporter
590	 56.98	0	671338..671688	-	116	152982371	-	mma_0590	-	hypothetical protein
591	 49.69	-1	671763..672245	+	160	152983023	rpsP	mma_0591	-	small subunit ribosomal protein S16
592	 52.22	0	672273..672812	+	179	152980656	rimM	mma_0592	-	16S rRNA processing protein RimM
593	 54.80	0	672839..673588	+	249	152980226	trmD	mma_0593	-	tRNA (guanine-N(1)-)-methyltransferase
594	 51.16	0	673701..674087	+	128	152980189	rplS	mma_0594	-	large subunit ribosomal protein L19
595	 59.19	+1	674354..675022	+	222	152982360	-	mma_0595	-	hypothetical protein
596	 57.89	0	675143..676099	+	318	152980221	cobD1	mma_0596	-	adenosylcobinamide-phosphate synthase
597	 55.07	0	676227..679097	+	956	152982119	-	mma_0597	-	hypothetical protein
598	 55.87	0	679104..680465	-	453	152982453	-	mma_0598	-	hypothetical protein
599	 59.52	+1	680462..681259	-	265	152982266	-	mma_0599	-	hypothetical protein
600	 57.63	0	681866..683293	+	475	152981237	dacB	mma_0600	-	D-alanyl-D-alanine carboxypeptidase
601	 56.22	0	683569..685320	+	583	152981219	ggt2	mma_0601	-	gamma-glutamyltranspeptidase
602	 55.09	0	685388..685888	-	166	152981857	-	mma_0602	-	hypothetical protein
603	 62.30	+1	685888..686712	-	274	152982154	-	mma_0603	-	hypothetical protein
604	 54.44	0	686726..687322	-	198	152981304	lemA2	mma_0604	-	LemA family protein
605	 55.89	0	687387..688277	-	296	152982701	-	mma_0605	-	transporter of the DMT superfamily
606	 56.62	0	688337..689152	+	271	152979998	pyrF	mma_0606	-	orotidine 5'-phosphate decarboxylase
607	 59.52	+1	689149..689652	-	167	152981356	cinA1	mma_0607	-	competence/damage inducible protein CinA
608	 55.56	0	689663..690184	-	173	152980547	pgpA	mma_0608	-	phosphatidylglycerophosphatase A
609	 60.58	+1	690181..691149	-	322	152980240	thiL	mma_0609	-	thiamine-monophosphate kinase
610	 56.47	0	691293..692498	-	401	152982729	rubB	mma_0610	-	rubredoxin reductase
611	 55.34	0	692836..695148	+	770	152981049	maeB	mma_0611	-	malic enzyme
612	 54.90	0	695209..696126	-	305	152982793	ushA	mma_0612	-	5'-nucleotidase
613	 56.96	0	696265..696645	+	126	152982029	-	mma_0613	-	hypothetical protein
614	 52.94	0	697118..697576	+	152	152981815	-	mma_0614	-	transcriptional regulator
615	 55.86	0	697664..698866	+	400	152981393	hmp	mma_0615	-	dihydropteridine reductase
616	 53.35	0	699526..702372	+	948	152982741	-	mma_0616	-	hybrid two-components system response regulator and sensor kinase
617	 53.11	0	702285..702911	+	208	152982896	-	mma_0617	-	hypothetical protein
618	 49.31	-1	702945..703595	+	216	152981623	rscB	mma_0618	-	positive response regulator for colanic capsule biosynthesis
619	 60.97	+1	703896..705632	-	578	152981917	-	mma_0619	-	hypothetical protein
620	 47.94	-1	705803..706069	-	88	152983163	rpmE	mma_0620	-	50S ribosomal protein L31
621	 57.03	0	706264..706896	+	210	152981420	-	mma_0621	-	hypothetical protein
622	 54.74	0	706989..708254	-	421	152980394	rho	mma_0622	-	transcription termination factor Rho
623	 50.15	-1	708363..708689	-	108	152982671	trxA	mma_0623	-	thioredoxin
624	 57.37	0	708988..711666	+	892	152981969	-	mma_0624	-	hypothetical protein
625	 57.50	0	711693..714944	+	1083	152981098	-	mma_0625	-	hypothetical protein
626	 55.09	0	715115..715330	+	71	152982442	-	mma_0626	-	hypothetical protein
627	 55.45	0	715327..715638	+	103	152982055	-	mma_0627	-	hypothetical protein
628	 58.17	0	715983..716441	+	152	152981413	-	mma_0628	-	hypothetical protein
629	 39.54	-2	716643..717077	-	144	152983461	-	mma_0629	-	hypothetical protein
630	 55.94	0	717118..718320	+	400	152982471	-	mma_0630	-	hypothetical protein
631	 55.63	0	718310..719713	+	467	152980978	-	mma_0631	-	capsular polysaccharide biosynthesis glycosyltransferase
632	 57.03	0	719751..720539	+	262	152980657	wza	mma_0632	-	polysaccharide export outer membrane protein
633	 56.99	0	720553..721947	+	464	152982045	-	mma_0633	-	exopolysaccharide biosynthesis protein
634	 60.24	+1	721981..722883	+	300	152981683	-	mma_0634	-	mrp-like protein
635	 56.39	0	722892..723932	+	346	152981458	-	mma_0635	-	exopolysaccharide biosynthesis protein
636	 58.12	0	723945..725021	+	358	152982243	-	mma_0636	-	hypothetical protein
637	 55.51	0	725077..726492	+	471	152982788	-	mma_0637	-	hypothetical protein
638	 54.86	0	726600..727463	+	287	152981957	-	mma_0638	-	hypothetical protein
639	 58.33	0	727484..728899	+	471	152982357	-	mma_0639	-	hypothetical protein
640	 57.14	0	728899..729465	+	188	152981743	cysE1	mma_0640	-	serine O-acetyltransferase
641	 57.75	0	729462..730706	+	414	152981672	-	mma_0641	-	glycosyl transferase, group 1 family protein
642	 58.84	0	730703..731890	+	395	152982337	-	mma_0642	-	glycosyl transferase, group 2 family protein
643	 57.60	0	731880..733070	+	396	152981529	-	mma_0643	-	teichoic acid biosynthesis protein
644	 54.71	0	733307..734326	+	339	152980429	galE	mma_0644	-	UDP-glucose 4-epimerase
645	 53.71	0	734379..735536	+	385	152979925	mpg	mma_0645	-	mannose-1-phosphate guanylyltransferase
646	 57.54	0	735554..736966	+	470	152981626	xanB	mma_0646	-	mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase
647	 59.19	+1	736966..738195	+	409	152982679	-	mma_0647	-	hypothetical protein
648	 57.59	0	738201..739643	+	480	152981930	-	mma_0648	-	hypothetical protein
649	 58.58	0	739646..740251	-	201	152982255	-	mma_0649	-	hypothetical protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.