IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
507	 57.08	0	565363..566853	-	496	152980541	xdhA	mma_0507	-	xanthine dehydrogenase, subunit A
508	 56.94	0	566971..568266	-	431	152981023	-	mma_0508	-	uracil/xanthine permease
509	 58.22	0	568466..569827	-	453	152981228	-	mma_0509	-	hydroxydechloroatrazine ethylaminohydrolase
510	 57.52	0	570121..571749	-	542	152981467	tar7	mma_0510	-	methyl-accepting chemotaxis protein
511	 58.91	+1	571764..573530	-	588	152981424	-	mma_0511	-	unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein
512	 57.20	0	573632..575026	-	464	152980454	pbuX2	mma_0512	-	xanthine permease
513	 54.91	0	575271..576206	-	311	152982787	-	mma_0513	-	LysR family transcriptional regulator
514	 54.69	0	576579..577814	+	411	152981072	-	mma_0514	-	hypothetical protein
515	 56.77	0	577863..579488	+	541	152979924	hutH	mma_0515	-	histidine ammonia-lyase
516	 52.88	0	579597..580691	-	364	152981709	-	mma_0516	-	porin
517	 56.99	0	580817..581767	-	316	152981727	-	mma_0517	-	polysaccharide deacetylase family protein
518	 54.06	0	581955..582311	+	118	152981524	-	mma_0518	-	transthyretin-like protein
519	 56.31	0	582357..584288	-	643	152982241	-	mma_0519	-	two component sensor histidine kinase
520	 54.13	0	584576..588412	+	1278	152981624	-	mma_0520	-	autotransporter
521	 55.01	0	588438..591209	+	923	152981607	-	mma_0521	-	outer membrane autotransporter
522	 57.19	0	591219..593318	+	699	152982107	-	mma_0522	-	hypothetical protein
523	 55.56	0	593327..593938	+	203	152980747	cysC	mma_0523	-	adenylylsulfate kinase
524	 48.40	-1	594033..594251	-	72	152982460	-	mma_0524	-	hypothetical protein
525	 58.59	0	594410..595573	-	387	152980092	cfa1	mma_0525	-	cyclopropane fatty acyl phospholipid synthase
526	 59.14	+1	595760..596623	+	287	152982688	-	mma_0526	-	LysR family transcriptional regulator
527	 57.25	0	596787..598454	+	555	152981373	aer	mma_0527	-	aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein
528	 57.26	0	598777..600318	+	513	152981130	-	mma_0528	-	ATP-dependent RNA helicase
529	 56.24	0	600385..601266	-	293	152980417	-	mma_0529	-	glutamyl-tRNA synthetase related protein
530	 59.37	+1	601270..602187	-	305	152982198	-	mma_0530	-	LysR family transcriptional regulator
531	 54.08	0	602311..603009	+	232	152981404	-	mma_0531	-	pirin-related protein
532	 54.26	0	603076..603921	-	281	152980539	kdsA	mma_0532	-	2-dehydro-3-deoxyphosphooctonate aldolase
533	 55.83	0	603997..604836	-	279	152981253	-	mma_0533	-	hypothetical protein
534	 55.25	0	605048..608506	+	1152	152980633	dnaE1	mma_0534	-	DNA polymerase III alpha subunit
535	 53.94	0	608549..610285	+	578	152982174	msbA	mma_0535	-	ABC-type multidrug transport system, ATPase and permease components
536	 53.86	0	610326..611090	+	254	152982713	-	mma_0536	-	hypothetical protein
537	 55.05	0	611167..612630	-	487	152980616	cafA	mma_0537	-	ribonuclease G (RNAse G) (cytoplasmic axial filament protein)
538	 56.36	0	612627..613247	-	206	152981387	maf1	mma_0538	-	nucleotide-binding protein implicated in inhibition of septum formation
539	 56.69	0	613255..613725	-	156	152981375	-	mma_0539	-	SPOUT methyltransferase superfamily protein
540	 56.41	0	613738..614400	-	220	152982104	-	mma_0540	-	hypothetical protein
541	 54.61	0	614400..615071	-	223	152980100	nadD	mma_0541	-	nicotinate-nucleotide adenylyltransferase
542	 56.96	0	615073..616071	-	332	152979898	hemF	mma_0542	-	coproporphyrinogen III oxidase
543	 57.63	0	616114..617385	-	423	152979938	purD	mma_0543	-	phosphoribosylamine--glycine ligase
544	 56.47	0	617509..618234	-	241	152981153	-	mma_0544	-	hypothetical protein
545	 55.64	0	618325..619830	+	501	152981573	-	mma_0545	-	hypothetical protein
546	 58.42	0	619889..620797	-	302	152982816	-	mma_0546	-	LysR family transcriptional regulator
547	 53.01	0	620972..621586	+	204	152980412	acpD1	mma_0547	-	acyl carrier protein phosphodiesterase
548	 57.43	0	621672..622310	+	212	152980494	ribA	mma_0548	-	GTP cyclohydrolase II
549	 53.31	0	622385..623290	+	301	152982668	-	mma_0549	-	transporter of the DMT superfamily
550	 59.87	+1	623300..624079	+	259	152982386	-	mma_0550	-	short chain dehydrogenase/reductase family oxidoreductase
551	 57.95	0	624114..625088	+	324	152980998	qor2	mma_0551	-	NADPH2:quinone reductase
552	 52.43	0	625323..625940	-	205	152982450	-	mma_0552	-	hypothetical protein
553	 57.14	0	626182..628836	+	884	152980567	pepN	mma_0553	-	aminopeptidase N
554	 55.62	0	628927..629931	+	334	152979833	fbp	mma_0554	-	fructose-1,6-bisphosphatase I
555	 53.66	0	636336..637511	+	391	152980194	atoB	mma_0555	-	acetyl-CoA C-acetyltransferase
556	 53.98	0	637556..638296	+	246	152981402	phbB	mma_0556	-	acetoacetyl-CoA reductase
557	 53.68	0	638354..638992	-	212	152981446	-	mma_0557	-	hypothetical protein
558	 55.95	0	639049..639636	-	195	152979979	-	mma_0558	-	hypothetical protein
559	 56.31	0	639689..639910	-	73	152983202	-	mma_0559	-	hypothetical protein
560	 57.88	0	639940..640212	-	90	152982712	-	mma_0560	-	hypothetical protein
561	 54.26	0	640244..640630	-	128	152981837	-	mma_0561	-	hypothetical protein
562	 57.79	0	640729..642159	-	476	152980617	sbcB	mma_0562	-	exonuclease I
563	 57.76	0	642196..643161	-	321	152982877	-	mma_0563	-	hypothetical protein
564	 54.34	0	643171..644046	-	291	152981680	-	mma_0564	-	signal transduction protein
565	 56.07	0	644043..644363	-	106	152982592	-	mma_0565	-	hypothetical protein
566	 54.03	0	644545..645810	-	421	152982756	-	mma_0566	-	hypothetical protein
567	 53.44	0	645888..646280	-	130	152981506	-	mma_0567	-	hypothetical protein
568	 52.84	0	646352..646756	-	134	152982746	-	mma_0568	-	hypothetical protein
569	 55.50	0	646943..647587	-	214	152981789	rhtB	mma_0569	-	homoserine/homoserine lactone efflux protein
570	 56.44	0	647835..648734	-	299	152981665	penP	mma_0570	-	Beta-lactamase class A
571	 58.66	0	648758..649144	-	128	152982605	-	mma_0571	-	hypothetical protein
572	 52.65	0	649298..650410	+	370	152982895	-	mma_0572	-	IS30 family transposase
573	 61.72	+1	650476..651687	-	403	152982482	-	mma_0573	-	major facilitator transporter
574	 57.56	0	651783..652748	+	321	152981643	-	mma_0574	-	LysR family transcriptional regulator
575	 54.13	0	652745..653119	-	124	152982276	-	mma_0575	-	hypothetical protein
576	 50.21	-1	653133..653612	-	159	152981776	-	mma_0576	-	hypothetical protein
577	 41.25	-2	653609..655870	-	753	152983148	-	mma_0577	-	hypothetical protein
578	 40.07	-2	655883..656713	-	276	152983022	dam	mma_0578	-	DNA adenine methylase
579	 56.95	0	656710..658458	-	582	152980200	glnS	mma_0579	-	glutaminyl-tRNA synthetase
580	 58.92	+1	658665..659426	-	253	152981919	-	mma_0580	-	hypothetical protein
581	 59.66	+1	659601..661199	-	532	152979978	ggt1	mma_0581	-	gamma-glutamyltranspeptidase
582	 59.51	+1	661414..662196	+	260	152980071	glpQ	mma_0582	-	glycerophosphoryl diester phosphodiesterase
583	 56.86	0	662300..664909	+	869	152979781	alaS	mma_0583	-	alanyl-tRNA synthetase
584	 50.44	-1	665161..665388	+	75	152983203	-	mma_0584	-	hypothetical protein
585	 54.93	0	665616..666365	+	249	152979969	etfB	mma_0585	-	electron transfer flavoprotein beta subunit
586	 57.85	0	666428..667357	+	309	152980063	etfA	mma_0586	-	electron transfer flavoprotein alpha subunit
587	 57.90	0	667498..669288	+	596	152981179	-	mma_0587	-	acyl-CoA dehydrogenase
588	 58.07	0	669295..669678	-	127	152982846	-	mma_0588	-	hypothetical protein
589	 60.74	+1	669675..671126	-	483	152980667	amtB2	mma_0589	-	ammonium transporter
590	 56.98	0	671338..671688	-	116	152982371	-	mma_0590	-	hypothetical protein
591	 49.69	-1	671763..672245	+	160	152983023	rpsP	mma_0591	-	small subunit ribosomal protein S16
592	 52.22	0	672273..672812	+	179	152980656	rimM	mma_0592	-	16S rRNA processing protein RimM
593	 54.80	0	672839..673588	+	249	152980226	trmD	mma_0593	-	tRNA (guanine-N(1)-)-methyltransferase
594	 51.16	0	673701..674087	+	128	152980189	rplS	mma_0594	-	large subunit ribosomal protein L19
595	 59.19	+1	674354..675022	+	222	152982360	-	mma_0595	-	hypothetical protein
596	 57.89	0	675143..676099	+	318	152980221	cobD1	mma_0596	-	adenosylcobinamide-phosphate synthase
597	 55.07	0	676227..679097	+	956	152982119	-	mma_0597	-	hypothetical protein
598	 55.87	0	679104..680465	-	453	152982453	-	mma_0598	-	hypothetical protein
599	 59.52	+1	680462..681259	-	265	152982266	-	mma_0599	-	hypothetical protein
600	 57.63	0	681866..683293	+	475	152981237	dacB	mma_0600	-	D-alanyl-D-alanine carboxypeptidase
601	 56.22	0	683569..685320	+	583	152981219	ggt2	mma_0601	-	gamma-glutamyltranspeptidase
602	 55.09	0	685388..685888	-	166	152981857	-	mma_0602	-	hypothetical protein
603	 62.30	+1	685888..686712	-	274	152982154	-	mma_0603	-	hypothetical protein
604	 54.44	0	686726..687322	-	198	152981304	lemA2	mma_0604	-	LemA family protein
605	 55.89	0	687387..688277	-	296	152982701	-	mma_0605	-	transporter of the DMT superfamily
606	 56.62	0	688337..689152	+	271	152979998	pyrF	mma_0606	-	orotidine 5'-phosphate decarboxylase
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.