IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
323	 53.89	0	362071..364809	+	912	152980489	polA	mma_0323	-	DNA polymerase I
324	 56.38	0	364914..365798	+	294	152980342	-	mma_0324	-	carboxymethylenebutenolidase
325	 55.51	0	366034..366705	+	223	152980477	-	mma_0325	-	ZIP zinc transporter
326	 58.27	0	366726..367571	-	281	152980059	sseA2	mma_0326	-	thiosulfate sulfurtransferase
327	 57.38	0	367595..368509	-	304	152980592	-	mma_0327	-	transporter of the DMT superfamily
328	 53.51	0	368648..369901	-	417	152980174	-	mma_0328	-	dioxygenase (alpha subunit) oxidoreductase protein
329	 55.69	0	370104..370358	+	84	152983197	xseB	mma_0329	-	exodeoxyribonuclease VII small subunit
330	 59.07	+1	370406..371248	+	280	152979918	ispA	mma_0330	-	geranyltranstransferase
331	 55.73	0	371250..373115	+	621	152979790	dxs	mma_0331	-	1-deoxy-D-xylulose-5-phosphate synthase
332	 53.16	0	373168..373974	+	268	152979889	-	mma_0332	-	putative GTP cyclohydrolase
333	 56.38	0	374045..374608	-	187	152979973	-	mma_0333	-	hypothetical protein
334	 57.64	0	374835..375731	+	298	152980163	-	mma_0334	-	transcriptional regulator
335	 57.59	0	375899..377386	+	495	152979945	glcD1	mma_0335	-	glycolate oxidase (fad-linked subunit) oxidoreductase protein
336	 58.52	0	377415..378470	+	351	152980441	glcE	mma_0336	-	glycolate oxidase, subunit GlcE
337	 54.50	0	378514..379746	+	410	152980162	glcF	mma_0337	-	glycolate oxidase iron-sulfur subunit
338	 53.29	0	379819..380304	-	161	152980104	bsaA	mma_0338	-	glutathione peroxidase
339	 53.39	0	380301..381437	-	378	152980677	pilU1	mma_0339	-	PilU twitching motility protein
340	 56.70	0	381539..382582	-	347	152980378	pilT	mma_0340	-	PilT twitching motility protein
341	 55.74	0	382702..383406	+	234	152980093	-	mma_0341	-	hypothetical protein
342	 57.45	0	383396..384220	+	274	152979991	proC	mma_0342	-	pyrroline-5-carboxylate reductase
343	 54.36	0	384309..384755	-	148	152980465	-	mma_0343	-	hypothetical protein
344	 55.89	0	384915..385415	-	166	152980066	-	mma_0344	-	acetyltransferase
345	 56.49	0	385429..386067	-	212	152980668	-	mma_0345	-	ThiJ/PfpI family protein
346	 57.69	0	386105..387541	-	478	152980367	-	mma_0346	-	major facilitator superfamily drug efflux transporter
347	 56.84	0	387557..388411	-	284	152980249	ubiA	mma_0347	-	4-hydroxybenzoate octaprenyltransferase
348	 58.13	0	388462..389457	-	331	152980366	oxyR	mma_0348	-	OxyR hydrogen peroxide-inducible genes activator
349	 57.75	0	389468..391699	-	743	152980116	recG	mma_0349	-	RecG-like helicase
350	 55.56	0	391823..392848	+	341	152980695	queA	mma_0350	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
351	 54.26	0	392842..393969	+	375	152980105	tgt	mma_0351	-	queuine/archaeosine tRNA-ribosyltransferase
352	 49.07	-1	394073..394396	+	107	152980538	yajC	mma_0352	-	preprotein translocase subunit YajC
353	 54.62	0	394476..396335	+	619	152980440	secD	mma_0353	-	preprotein translocase SecD subunit
354	 51.64	0	396458..397402	+	314	152979888	secF	mma_0354	-	preprotein translocase subunit SecF
355	 54.44	0	397467..397916	-	149	152981973	-	mma_0355	-	MarR family transcriptional regulator
356	 50.88	0	398001..398570	-	189	152979972	-	mma_0356	-	hypothetical protein
357	 51.56	0	398635..399210	-	191	152980568	-	mma_0357	-	hypothetical protein
358	 59.81	+1	399237..399761	-	174	152980646	cybB1	mma_0358	-	cytochrome B561
359	 54.90	0	399865..401232	-	455	152979778	purB	mma_0359	-	adenylosuccinate lyase
360	 52.78	0	401432..402043	+	203	152980248	gst1	mma_0360	-	glutathione S-transferase
361	 49.48	-1	402111..402587	-	158	152980645	bfr1	mma_0361	-	bacterioferritin (cytochrome b1)
362	 47.89	-1	402799..403272	-	157	152980661	bfr2	mma_0362	-	bacterioferritin (cytochrome b1)
363	 50.85	0	403585..403995	-	136	152980542	exbD3	mma_0363	-	biopolymer transport protein ExbD
364	 56.79	0	403995..404723	-	242	152981614	exbB2	mma_0364	-	biopolymer transport protein ExbB
365	 55.90	0	404736..405422	-	228	152982893	tonB	mma_0365	-	TonB-like protein
366	 49.07	-1	405434..405649	-	71	152983198	bfd	mma_0366	-	bacterioferritin-associated ferredoxin protein
367	 53.58	0	405746..406066	-	106	152983348	-	mma_0367	-	hypothetical protein
368	 56.75	0	406580..408202	-	540	152980948	-	mma_0368	-	glutamate synthase large subunit
369	 50.94	0	408569..409528	+	319	152981902	-	mma_0369	-	hypothetical protein
370	 52.56	0	409534..409845	+	103	152982413	-	mma_0370	-	hypothetical protein
371	 48.24	-1	409845..410213	+	122	152981962	-	mma_0371	-	hypothetical protein
372	 51.65	0	410220..410885	+	221	152981644	-	mma_0372	-	hypothetical protein
373	 57.46	0	410932..412050	-	372	152981022	trmU	mma_0373	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
374	 56.03	0	412043..412531	-	162	152982175	-	mma_0374	-	MutT/NUDIX family hydrolase
375	 48.89	-1	412898..413257	+	119	152980191	panD	mma_0375	-	aspartate alpha-decarboxylase
376	 57.35	0	413382..414980	+	532	152979857	pntA	mma_0376	-	NAD(P) transhydrogenase subunit alpha
377	 53.59	0	414991..416397	+	468	152979867	pntB	mma_0377	-	NAD(P) transhydrogenase subunit beta
378	 56.95	0	416495..417400	-	301	152981563	-	mma_0378	-	LysR family transcriptional regulator
379	 51.69	0	417508..419256	+	582	152981070	gcl	mma_0379	-	glyoxylate carboligase
380	 49.10	-1	419258..420037	+	259	152979885	gip	mma_0380	-	hydroxypyruvate isomerase
381	 51.58	0	420135..421022	+	295	152980168	garR2	mma_0381	-	2-hydroxy-3-oxopropionate reductase
382	 56.95	0	421111..422376	+	421	152980672	ttuD	mma_0382	-	hydroxypyruvate reductase
383	 53.56	0	422453..423871	+	472	152980607	pyk	mma_0383	-	pyruvate kinase
384	 53.50	0	424278..426191	+	637	152980075	thiC	mma_0384	-	thiamine biosynthesis protein
385	 59.31	+1	426191..426394	+	67	152982020	thiS2	mma_0385	-	thiamine biosynthesis protein ThiS
386	 57.02	0	426469..427266	+	265	152980962	thiG2	mma_0386	-	thiamine biosynthesis protein
387	 55.01	0	427380..428357	+	325	152981242	qor1	mma_0387	-	NADPH2:quinone reductase
388	 54.94	0	428430..429410	-	326	152981488	-	mma_0388	-	LysR family transcriptional regulator
389	 51.49	0	429555..429890	+	111	152983199	-	mma_0389	-	hypothetical protein
390	 51.93	0	430301..431467	+	388	152980238	sucC	mma_0390	-	succinyl-CoA synthetase beta chain
391	 52.40	0	431470..432345	+	291	152980019	sucD	mma_0391	-	succinyl-CoA synthetase subunit alpha
392	 49.74	-1	432563..433330	+	255	152981382	-	mma_0392	-	FAA-hydrolase family protein
393	 52.72	0	433350..434360	+	336	152980035	apbA	mma_0393	-	2-dehydropantoate 2-reductase
394	 49.08	-1	435026..436054	+	342	152981073	tctC2	mma_0394	-	tricarboxylate binding receptor
395	 48.66	-1	436170..436691	+	173	152982783	tctB2	mma_0395	-	small permease component of tripartite tricarboxylate transporter
396	 52.22	0	436764..438293	+	509	152981013	tctA2	mma_0396	-	tricarboxylate transport protein TctA
397	 54.44	0	438531..439364	+	277	152982485	-	mma_0397	-	hypothetical protein
398	 49.26	-1	439418..440026	-	202	152982277	-	mma_0398	-	hypothetical protein
399	 51.72	0	440313..442025	+	570	152980239	oxc	mma_0399	-	putative oxalyl-CoA decarboxylase
400	 49.29	-1	442277..443536	+	419	152979919	-	mma_0400	-	formyl-coenzyme A transferase
401	 54.44	0	444623..445873	+	416	152981165	caiB1	mma_0401	-	formyl-coenzyme A transferase
402	 54.81	0	446618..448321	+	567	152980298	fdhB1	mma_0402	-	formate dehydrogenase beta subunit
403	 53.19	0	448353..451193	+	946	152981034	fdhA1	mma_0403	-	formate dehydrogenase alpha subunit
404	 58.64	0	451277..452173	-	298	152982128	-	mma_0404	-	transporter of the DMT superfamily
405	 52.55	0	452263..453126	+	287	152981362	fdhD1	mma_0405	-	formate dehydrogenase accessory protein fdhD
406	 54.72	0	453149..454663	-	504	152982689	dadA1	mma_0406	-	D-amino-acid dehydrogenase
407	 50.00	-1	454806..455141	+	111	152982894	-	mma_0407	-	hypothetical protein
408	 52.16	0	455237..455560	-	107	152981896	glnB1	mma_0408	-	nitrogen regulatory protein PII
409	 56.19	0	455632..458733	-	1033	152980988	czcA2	mma_0409	-	acriflavin resistance protein:heavy metal efflux pump
410	 58.59	0	458738..459889	-	383	152981912	czcB2	mma_0410	-	cation efflux protein
411	 58.15	0	459886..461130	-	414	152981764	-	mma_0411	-	outer membrane cation efflux system protein
412	 56.19	0	461219..461743	-	174	152982428	-	mma_0412	-	hypothetical protein
413	 57.72	0	461939..463078	-	379	152980276	ubiH	mma_0413	-	2-octaprenyl-6-methoxyphenol hydroxylase
414	 56.76	0	463089..464420	-	443	152980549	pepP	mma_0414	-	X-Pro aminopeptidase
415	 56.07	0	464417..465133	-	238	152982188	-	mma_0415	-	nucleotidyl transferase
416	 55.11	0	465233..466270	-	345	152981139	-	mma_0416	-	hypothetical protein
417	 52.26	0	466372..468627	+	751	152979883	ostA	mma_0417	-	OstA organic solvent tolerance protein
418	 54.26	0	468650..470059	+	469	152982039	surA	mma_0418	-	peptidyl-prolyl cis-trans isomerase SurA
419	 56.69	0	470087..471118	+	343	152980362	pdxA	mma_0419	-	4-hydroxythreonine-4-phosphate dehydrogenase
420	 56.51	0	471163..471930	+	255	152979807	ksgA	mma_0420	-	dimethyladenosine transferase
421	 53.19	0	472018..472425	+	135	152982021	gloA1	mma_0421	-	lactoylglutathione lyase
422	 56.26	0	472473..473375	-	300	152981584	-	mma_0422	-	hypothetical protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.