IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3522	 54.56	0	3918390..3919958	-	522	152982591	dppA2	mma_3522	-	ABC-type transport system, periplasmic component
3523	 55.36	0	3920247..3920582	+	111	152982177	-	mma_3523	-	hypothetical protein
3524	 55.97	0	3920579..3921877	-	432	152981609	-	mma_3524	-	hypothetical protein
3525	 58.10	0	3922210..3924648	+	812	152980975	zntA2	mma_3525	-	cation-translocating P-type ATPase
3526	 55.79	0	3924676..3925098	+	140	152981862	cueR	mma_3526	-	Cu(I)-responsive response regulator
3527	 52.16	0	3925201..3925524	+	107	152982792	-	mma_3527	-	hypothetical protein
3528	 50.24	-1	3925585..3925791	-	68	152983327	-	mma_3528	-	heavy metal transport/detoxification protein
3529	 52.01	0	3925857..3926354	-	165	152981370	-	mma_3529	-	small integral membrane protein
3530	 53.87	0	3927217..3928287	+	356	152982630	-	mma_3530	-	hypothetical protein
3531	 54.38	0	3928611..3930767	+	718	152981258	-	mma_3531	-	outer membrane receptor
3532	 57.01	0	3930966..3931856	+	296	152981079	rarD2	mma_3532	-	transporter of the DMT superfamily chloramphenicol-sensitivity protein (rarD family)
3533	 55.06	0	3931916..3933793	-	625	152980039	kup	mma_3533	-	KUP system potassium uptake protein
3534	 56.53	0	3934070..3935737	+	555	152981164	-	mma_3534	-	putative ABC transporter ATP-binding protein
3535	 56.76	0	3935975..3936973	+	332	152982705	-	mma_3535	-	ABC-type transport systems, periplasmic component
3536	 56.64	0	3936992..3937759	+	255	152981719	-	mma_3536	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
3537	 58.16	0	3937747..3938487	+	246	152982290	-	mma_3537	-	ABC-type transport system, ATPase component
3538	 57.82	0	3938516..3938809	+	97	152982058	-	mma_3538	-	hypothetical protein
3539	 46.59	-1	3938858..3939121	-	87	152982508	-	mma_3539	-	hypothetical protein
3540	 54.95	0	3939186..3939962	-	258	152981399	-	mma_3540	-	molybdopterin binding oxidoreductase
3541	 56.18	0	3939981..3940571	-	196	152982056	-	mma_3541	-	thiosulfate reductase cytochrome B subunit (membrane anchoring protein)
3542	 54.52	0	3940794..3941402	+	202	152981873	rpoE9	mma_3542	-	RNA polymerase sigma factor
3543	 58.88	+1	3941399..3942040	+	213	152981749	-	mma_3543	-	hypothetical protein
3544	 55.85	0	3942124..3943824	-	566	152981456	tar14	mma_3544	-	methyl-accepting chemotaxis protein
3545	 55.89	0	3944130..3944723	+	197	152981605	-	mma_3545	-	hypothetical protein
3546	 57.19	0	3944732..3945565	-	277	152981140	-	mma_3546	-	aldo/keto reductase family oxidoreductase
3547	 55.00	0	3945624..3946223	-	199	152982052	-	mma_3548	-	glutaredoxin family protein
3548	 54.68	0	3946202..3946660	+	152	152982230	-	mma_3547	-	hypothetical protein
3549	 55.73	0	3946798..3947565	+	255	152981750	-	mma_3549	-	phytanoyl-CoA dioxygenase
3550	 52.08	0	3947636..3947923	-	95	152982587	-	mma_3550	-	hypothetical protein
3551	 56.08	0	3948288..3948863	+	191	152981501	-	mma_3551	-	hypothetical protein
3552	 56.88	0	3948915..3949895	-	326	152981257	-	mma_3552	-	hypothetical protein
3553	 51.83	0	3949944..3950408	-	154	152982496	-	mma_3553	-	hypothetical protein
3554	 55.62	0	3950405..3952522	-	705	152981048	-	mma_3554	-	ABC-type multidrug transport system, ATPase and permease components
3555	 57.49	0	3952892..3955060	+	722	152981863	cphA1	mma_3555	-	cyanophycin synthetase
3556	 58.78	0	3955189..3957750	+	853	152981679	cphA2	mma_3556	-	cyanophycin synthetase
3557	 53.81	0	3957795..3958424	-	209	152983016	-	mma_3557	-	hypothetical protein
3558	 51.33	0	3958440..3958928	-	162	152983017	-	mma_3558	-	hypothetical protein
3559	 45.56	-2	3959020..3959616	-	198	152982234	-	mma_3559	-	hypothetical protein
3560	 50.12	-1	3959872..3960300	-	142	152982340	-	mma_3560	-	hypothetical protein
3561	 51.89	0	3960356..3961174	-	272	152981703	-	mma_3561	-	isochorismatase hydrolase
3562	 58.12	0	3961235..3962158	-	307	152980940	-	mma_3562	-	ABC-type transport system, permease component
3563	 56.56	0	3962155..3963252	-	365	152981332	-	mma_3563	-	ABC-type uncharacterized transport system, permease component
3564	 57.89	0	3963264..3964835	-	523	152981256	-	mma_3564	-	ABC-type uncharacterized transport systems, ATPase component
3565	 54.75	0	3964840..3965829	-	329	152981540	-	mma_3565	-	ABC-type transport system, periplasmic component/surface lipoprotein
3566	 54.40	0	3966099..3967190	-	363	152981829	-	mma_3566	-	porin
3567	 49.03	-1	3968181..3968696	-	171	152981721	pyrR2	mma_3567	-	transcriptional regulator PyrR
3568	 54.21	0	3968693..3969559	-	288	152982670	-	mma_3568	-	hypothetical protein
3569	 55.42	0	3969560..3970510	-	316	152980631	arcC2	mma_3569	-	carbamate kinase
3570	 53.03	0	3970856..3971764	+	302	152982855	-	mma_3570	-	LysR family transcriptional regulator
3571	 57.80	0	3972247..3972810	+	187	152982030	-	mma_3571	-	cytochrome c family protein
3572	 54.81	0	3972874..3973278	-	134	152982838	-	mma_3572	-	hypothetical protein
3573	 52.42	0	3973294..3973686	-	130	152982110	-	mma_3573	-	hypothetical protein
3574	 49.83	-1	3973704..3974006	-	100	152981952	-	mma_3574	-	hypothetical protein
3575	 58.72	0	3974282..3975715	-	477	152980430	pdhD2	mma_3575	-	dihydrolipoamide dehydrogenase
3576	 53.12	0	3975763..3976242	-	159	152982737	-	mma_3576	-	hypothetical protein
3577	 59.85	+1	3976366..3977142	-	258	152981868	-	mma_3577	-	hypothetical protein
3578	 54.25	0	3977176..3977634	-	152	152982491	-	mma_3578	-	hypothetical protein
3579	 59.26	+1	3977754..3978725	-	323	152982837	pip	mma_3579	-	proline iminopeptidase chain A
3580	 54.84	0	3978912..3980036	+	374	152982694	-	mma_3580	-	mechanosensitive ion channel protein
3581	 53.33	0	3980068..3980532	-	154	152981726	-	mma_3581	-	hypothetical protein
3582	 54.69	0	3981154..3983307	-	717	152981136	fhuE7	mma_3582	-	outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
3583	 53.31	0	3983574..3984314	+	246	152980983	-	mma_3583	-	hypothetical protein
3584	 55.77	0	3984372..3986087	-	571	152981395	tar15	mma_3584	-	methyl-accepting chemotaxis protein
3585	 59.04	+1	3986454..3987659	-	401	152979982	dinP	mma_3585	-	DNA-damage-inducible protein p
3586	 57.14	0	3987857..3988192	-	111	152982860	-	mma_3586	-	hypothetical protein
3587	 54.28	0	3988395..3988733	-	112	152982728	-	mma_3587	-	hypothetical protein
3588	 54.01	0	3988930..3989640	+	236	152982403	-	mma_3588	-	hypothetical protein
3589	 52.17	0	3989669..3989875	-	68	152983328	-	mma_3589	-	hypothetical protein
3590	 56.83	0	3989872..3990186	-	104	152982017	-	mma_3590	-	hypothetical protein
3591	 50.72	0	3990250..3990456	-	68	152983329	slyX	mma_3591	-	SlyX protein
3592	 56.14	0	3990485..3992545	-	686	152980889	rep	mma_3592	-	ATP-dependent DNA helicase Rep
3593	 58.52	0	3992643..3994004	-	453	152980929	trkG	mma_3593	-	Trk-type K+ transport systems, membrane component
3594	 56.22	0	3994001..3994651	-	216	152980452	trkA	mma_3594	-	trk system potassium uptake protein
3595	 55.91	0	3994856..3995329	+	157	152982567	-	mma_3595	-	hypothetical protein
3596	 57.45	0	3995394..3995762	-	122	152983018	-	mma_3596	-	transport associated protein
3597	 55.93	0	3996023..3996637	-	204	152982054	-	mma_3597	-	multiple antibiotic transporter
3598	 54.86	0	3996667..3997581	-	304	152982024	-	mma_3598	-	L-proline 4-hydroxylase
3599	 54.11	0	3997595..3998032	-	145	152982350	ectC	mma_3599	-	L-ectoine synthase
3600	 56.40	0	3998029..3999324	-	431	152982546	ectB	mma_3600	-	diaminobutyrate--2-oxoglutarate aminotransferase
3601	 55.36	0	3999373..3999894	-	173	152982599	ectA	mma_3601	-	L-2,4-diaminobutyric acid acetyltransferase
3602	 54.35	0	4000016..4000486	-	156	152982012	-	mma_3602	-	MarR family transcriptional regulator
3603	 58.17	0	4000657..4001115	-	152	152981535	elaA	mma_3603	-	ElaA protein
3604	 55.89	0	4001115..4001513	-	132	152981983	-	mma_3604	-	hypothetical protein
3605	 50.79	0	4001516..4001767	-	83	152983330	-	mma_3605	-	hypothetical protein
3606	 58.43	0	4001789..4003840	-	683	152980398	priA	mma_3606	-	primosomal protein N'
3607	 58.73	0	4004988..4006070	-	360	152980188	hemE	mma_3607	-	uroporphyrinogen decarboxylase
3608	 50.78	0	4006171..4006680	-	169	152982407	-	mma_3608	-	hypothetical protein
3609	 56.42	0	4006782..4008323	+	513	152980663	glpD	mma_3609	-	glycerol-3-phosphate dehydrogenase
3610	 50.94	0	4008515..4009099	+	194	152982863	-	mma_3610	-	hypothetical protein
3611	 51.79	0	4009242..4009577	+	111	152981987	-	mma_3611	-	hypothetical protein
3612	 53.20	0	4009665..4010117	-	150	152981791	ibpA	mma_3612	-	16 kDa heat shock protein A
3613	 51.80	0	4010440..4011078	+	212	152981414	-	mma_3613	-	hypothetical protein
3614	 55.75	0	4011106..4011618	+	170	152981392	-	mma_3614	-	hypothetical protein
3615	 56.37	0	4011636..4012490	+	284	152979843	-	mma_3615	-	ABC-type transport system, periplasmic component
3616	 57.90	0	4012571..4013608	+	345	152980515	apbE	mma_3616	-	thiamine biosynthesis lipoprotein
3617	 60.03	+1	4013605..4014975	+	456	152980682	-	mma_3617	-	oxidoreductase
3618	 54.04	0	4014992..4015672	-	226	152980388	piuC1	mma_3618	-	PiuC iron-regulated protein
3619	 52.57	0	4015753..4018008	-	751	152980708	-	mma_3619	-	TonB-dependent receptor for iron transport
3620	 53.89	0	4018301..4018981	-	226	152979871	piuC2	mma_3620	-	PiuC iron-regulated protein
3621	 52.83	0	4019064..4021325	-	753	152980420	-	mma_3621	-	catecholate siderophore receptor Fiu
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.