IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3449	 51.00	0	3829338..3831284	+	648	152983012	-	mma_3449	-	TPR domain-containing protein
3450	 50.20	-1	3831582..3833372	+	596	152983141	-	mma_3450	-	transposition protein, TnsD-related protein
3451	 51.31	0	3833807..3835180	+	457	152983361	-	mma_3451	-	hypothetical protein
3452	 49.21	-1	3835332..3836591	-	419	152983323	-	mma_3452	-	Tn7-like transposition protein C
3453	 50.67	0	3836600..3838825	-	741	152983013	-	mma_3453	-	Tn7-like transposition protein B
3454	 49.22	-1	3838813..3839712	-	299	152983324	tnsA	mma_3454	-	Tn7-like transposition protein A
3455	 48.85	-1	3840392..3841216	+	274	152983360	-	mma_3455	-	hypothetical protein
3456	 49.32	-1	3841424..3841936	-	170	152983359	-	mma_3456	-	hypothetical protein
3457	 57.06	0	3842272..3843645	-	457	152983014	-	mma_3457	-	hypothetical protein
3458	 52.61	0	3843661..3844542	-	293	152982138	-	mma_3458	-	hypothetical protein
3459	 54.78	0	3844539..3845438	-	299	152983015	parB1	mma_3459	-	chromosome partitionning protein parB
3460	 56.39	0	3845435..3847000	-	521	152981971	-	mma_3460	-	recombinase
3461	 55.98	0	3847170..3847637	-	155	152983142	-	mma_3461	-	hypothetical protein
3462	 53.14	0	3848112..3849050	-	312	152983143	-	mma_3462	-	hypothetical protein
3463	 52.37	0	3849575..3850798	+	407	152983325	-	mma_3463	-	hypothetical protein
3464	 52.21	0	3850795..3851292	+	165	152983358	-	mma_3464	-	hypothetical protein
3465	 53.42	0	3852033..3852998	+	321	152981615	-	mma_3465	-	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component
3466	 55.07	0	3853111..3854421	+	436	152981454	-	mma_3466	-	xenobiotic compound monooxygenase A subunit
3467	 50.76	0	3854491..3854754	+	87	152982424	-	mma_3467	-	hypothetical protein
3468	 53.65	0	3854770..3855153	+	127	152982273	-	mma_3468	-	hypothetical protein
3469	 57.51	0	3855395..3857731	-	778	152981099	deaD	mma_3469	-	ATP-dependent RNA helicase
3470	 43.24	-2	3858005..3858943	+	312	152983326	-	mma_3470	-	hypothetical protein
3471	 41.46	-2	3858956..3859570	+	204	152983357	-	mma_3471	-	hypothetical protein
3472	 52.97	0	3859797..3860234	-	145	152982849	-	mma_3472	-	hypothetical protein
3473	 52.49	0	3860320..3861645	-	441	152982449	oxlT4	mma_3473	-	major facilitator superfamily oxalate/formate antiporter
3474	 56.40	0	3862522..3863271	-	249	152982087	-	mma_3474	-	acid phosphatase
3475	 57.33	0	3863499..3864323	+	274	152982475	-	mma_3475	-	hypothetical protein
3476	 56.98	0	3864405..3865127	-	240	152981005	gpm3	mma_3476	-	phosphoglycerate mutase
3477	 55.72	0	3865392..3866012	+	206	152982650	-	mma_3477	-	hypothetical protein
3478	 60.69	+1	3865969..3867390	-	473	152980931	-	mma_3478	-	outer membrane efflux protein
3479	 58.67	0	3867407..3869194	-	595	152981558	-	mma_3479	-	ATP-binding/permease fusion ABC transporter
3480	 59.37	+1	3869353..3870531	-	392	152982001	-	mma_3480	-	ABC export system, membrane fusion protein
3481	 58.49	0	3870531..3871154	-	207	152982261	-	mma_3481	-	hypothetical protein
3482	 55.35	0	3871308..3871952	-	214	152982499	-	mma_3482	-	hypothetical protein
3483	 55.61	0	3872269..3874710	-	813	152981197	fhuE4	mma_3483	-	outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
3484	 61.53	+1	3874811..3875803	-	330	152981305	fecR14	mma_3484	-	Fe2+-dicitrate sensor, membrane component
3485	 55.23	0	3875796..3876302	-	168	152980397	fecI14	mma_3485	-	ECF subfamily RNA polymerase sigma factor
3486	 59.13	+1	3876437..3878068	-	543	152982343	prpR	mma_3486	-	propionate catabolism operon regulatory protein
3487	 57.37	0	3878306..3879187	+	293	152981126	prpB	mma_3487	-	carboxyvinyl-carboxyphosphonate phosphorylmutase
3488	 55.24	0	3879220..3880383	+	387	152980413	prpC	mma_3488	-	methylcitrate synthase
3489	 54.48	0	3880420..3881871	+	483	152980981	prpD	mma_3489	-	2-methylcitrate dehydratase
3490	 56.12	0	3881948..3883852	+	634	152980534	prpE	mma_3490	-	propionyl-CoA synthetase
3491	 55.20	0	3883926..3886454	-	842	152980959	fhuE5	mma_3491	-	outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
3492	 58.08	0	3886545..3887534	-	329	152981259	fecR15	mma_3492	-	Fe2+-dicitrate sensor, membrane component
3493	 59.06	+1	3887531..3888043	-	170	152981881	fecI15	mma_3493	-	ECF subfamily RNA polymerase sigma factor
3494	 57.12	0	3888052..3888816	-	254	152982392	-	mma_3494	-	hypothetical protein
3495	 54.77	0	3889096..3891558	-	820	152981147	fhuE6	mma_3495	-	outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
3496	 57.58	0	3891669..3892691	-	340	152981010	fecR16	mma_3496	-	Fe2+-dicitrate sensor, membrane component
3497	 56.22	0	3892670..3893224	-	184	152981821	fecI16	mma_3497	-	ECF subfamily RNA polymerase sigma factor
3498	 57.58	0	3893449..3893877	+	142	152981833	-	mma_3498	-	hypothetical protein
3499	 58.10	0	3893953..3895002	-	349	152980642	idh	mma_3499	-	isocitrate dehydrogenase (NAD+)
3500	 54.17	0	3895335..3895718	+	127	152981943	-	mma_3500	-	hypothetical protein
3501	 56.86	0	3895737..3896654	+	305	152981110	-	mma_3501	-	pirin-related protein
3502	 51.15	0	3896667..3897014	-	115	152981921	-	mma_3502	-	hypothetical protein
3503	 58.11	0	3897066..3897860	-	264	152981700	prtR	mma_3503	-	PrtR transmembrane transcriptional regulator (anti-sigma factor)
3504	 57.79	0	3897857..3898363	-	168	152980264	rpoE8	mma_3504	-	ECF subfamily RNA polymerase sigma factor
3505	 53.60	0	3898398..3898772	-	124	152981802	-	mma_3505	-	hypothetical protein
3506	 54.23	0	3899000..3899554	-	184	152982079	-	mma_3506	-	TetR family transcriptional regulator
3507	 58.24	0	3899689..3900198	+	169	152981737	-	mma_3507	-	hypothetical protein
3508	 53.13	0	3900660..3901952	+	430	152982869	oxlT5	mma_3508	-	major facilitator superfamily oxalate/formate antiporter
3509	 55.74	0	3902177..3903256	+	359	152980908	-	mma_3509	-	hypothetical protein
3510	 55.32	0	3903375..3904211	+	278	152981000	-	mma_3510	-	hypothetical protein
3511	 58.46	0	3904166..3905116	+	316	152981592	-	mma_3511	-	RNA pseudouridylate synthase family protein
3512	 55.93	0	3905190..3907220	+	676	152982364	-	mma_3512	-	two-component sensor histidine kinase
3513	 55.97	0	3907232..3909775	-	847	152981190	mdoH	mma_3513	-	glucosyltransferase MdoH
3514	 53.88	0	3909775..3911307	-	510	152980965	mdoG	mma_3514	-	glucan biosynthesis protein G
3515	 55.46	0	3911752..3912117	-	121	152982487	-	mma_3515	-	hypothetical protein
3516	 56.51	0	3912278..3913183	+	301	152981654	-	mma_3516	-	ribonuclease BN
3517	 55.88	0	3913253..3914476	+	407	152981430	-	mma_3517	-	major facilitator transporter
3518	 55.69	0	3914473..3915474	-	333	152982636	-	mma_3518	-	ABC-type transport system, ATPase component
3519	 57.10	0	3915467..3916846	-	459	152981097	dppD2	mma_3519	-	oligopeptide ATP-binding ABC transporter protein
3520	 56.07	0	3916453..3917358	-	301	152981210	dppC2	mma_3520	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
3521	 56.34	0	3917360..3918337	-	325	152980968	dppB2	mma_3521	-	transmembrane (dipeptide transport system permease) ABC transporter protein
3522	 54.56	0	3918390..3919958	-	522	152982591	dppA2	mma_3522	-	ABC-type transport system, periplasmic component
3523	 55.36	0	3920247..3920582	+	111	152982177	-	mma_3523	-	hypothetical protein
3524	 55.97	0	3920579..3921877	-	432	152981609	-	mma_3524	-	hypothetical protein
3525	 58.10	0	3922210..3924648	+	812	152980975	zntA2	mma_3525	-	cation-translocating P-type ATPase
3526	 55.79	0	3924676..3925098	+	140	152981862	cueR	mma_3526	-	Cu(I)-responsive response regulator
3527	 52.16	0	3925201..3925524	+	107	152982792	-	mma_3527	-	hypothetical protein
3528	 50.24	-1	3925585..3925791	-	68	152983327	-	mma_3528	-	heavy metal transport/detoxification protein
3529	 52.01	0	3925857..3926354	-	165	152981370	-	mma_3529	-	small integral membrane protein
3530	 53.87	0	3927217..3928287	+	356	152982630	-	mma_3530	-	hypothetical protein
3531	 54.38	0	3928611..3930767	+	718	152981258	-	mma_3531	-	outer membrane receptor
3532	 57.01	0	3930966..3931856	+	296	152981079	rarD2	mma_3532	-	transporter of the DMT superfamily chloramphenicol-sensitivity protein (rarD family)
3533	 55.06	0	3931916..3933793	-	625	152980039	kup	mma_3533	-	KUP system potassium uptake protein
3534	 56.53	0	3934070..3935737	+	555	152981164	-	mma_3534	-	putative ABC transporter ATP-binding protein
3535	 56.76	0	3935975..3936973	+	332	152982705	-	mma_3535	-	ABC-type transport systems, periplasmic component
3536	 56.64	0	3936992..3937759	+	255	152981719	-	mma_3536	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
3537	 58.16	0	3937747..3938487	+	246	152982290	-	mma_3537	-	ABC-type transport system, ATPase component
3538	 57.82	0	3938516..3938809	+	97	152982058	-	mma_3538	-	hypothetical protein
3539	 46.59	-1	3938858..3939121	-	87	152982508	-	mma_3539	-	hypothetical protein
3540	 54.95	0	3939186..3939962	-	258	152981399	-	mma_3540	-	molybdopterin binding oxidoreductase
3541	 56.18	0	3939981..3940571	-	196	152982056	-	mma_3541	-	thiosulfate reductase cytochrome B subunit (membrane anchoring protein)
3542	 54.52	0	3940794..3941402	+	202	152981873	rpoE9	mma_3542	-	RNA polymerase sigma factor
3543	 58.88	+1	3941399..3942040	+	213	152981749	-	mma_3543	-	hypothetical protein
3544	 55.85	0	3942124..3943824	-	566	152981456	tar14	mma_3544	-	methyl-accepting chemotaxis protein
3545	 55.89	0	3944130..3944723	+	197	152981605	-	mma_3545	-	hypothetical protein
3546	 57.19	0	3944732..3945565	-	277	152981140	-	mma_3546	-	aldo/keto reductase family oxidoreductase
3547	 55.00	0	3945624..3946223	-	199	152982052	-	mma_3548	-	glutaredoxin family protein
3548	 54.68	0	3946202..3946660	+	152	152982230	-	mma_3547	-	hypothetical protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.