IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2897	 54.67	0	3248142..3248666	+	174	152980524	rlpB	mma_2897	-	rare lipoprotein B
2898	 57.82	0	3248650..3249666	+	338	152980551	holA	mma_2898	-	DNA polymerase III subunit delta
2899	 58.81	0	3249781..3251028	+	415	152980424	proA	mma_2899	-	glutamate-5-semialdehyde dehydrogenase
2900	 56.19	0	3251082..3251501	+	139	152981640	-	mma_2900	-	hypothetical protein
2901	 56.55	0	3251520..3252122	+	200	152980925	nahD	mma_2901	-	2-hydroxychromene-2-carboxylate isomerase
2902	 56.84	0	3252230..3253450	+	406	152981177	-	mma_2902	-	N6-adenine-specific DNA methylase
2903	 49.87	-1	3253536..3253910	+	124	152981911	-	mma_2903	-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
2904	 59.71	+1	3254051..3254740	+	229	152981365	-	mma_2904	-	transcriptional regulator
2905	 55.74	0	3254852..3256324	+	490	152979948	gabD	mma_2905	-	succinate-semialdehyde dehydrogenase (NADP+)
2906	 57.53	0	3256389..3257657	+	422	152982580	bcr	mma_2906	-	major facilitator superfamily drug (bicyclomycin) resistance translocase
2907	 57.64	0	3257674..3259833	-	719	152982088	-	mma_2907	-	hypothetical protein
2908	 57.10	0	3259996..3261762	-	588	152982821	-	mma_2909	-	sensory box histidine kinase/response regulator
2909	 54.48	0	3261751..3262497	+	248	152981499	citB5	mma_2908	-	LuxR family DNA-binding response regulator
2910	 54.10	0	3262506..3263921	-	471	152982684	-	mma_2910	-	hypothetical protein
2911	 52.38	0	3263893..3265782	-	629	152982141	-	mma_2911	-	hypothetical protein
2912	 55.99	0	3266415..3268109	-	564	152980411	ggt5	mma_2912	-	gamma-glutamyltranspeptidase
2913	 54.17	0	3268311..3268862	-	183	152982672	-	mma_2913	-	hypothetical protein
2914	 53.76	0	3268894..3270210	-	438	152981517	codA	mma_2914	-	cytosine deaminase
2915	 58.13	0	3270235..3271827	-	530	152980349	ggt6	mma_2915	-	gamma-glutamyltranspeptidase
2916	 52.40	0	3271947..3272591	-	214	152981412	-	mma_2916	-	LuxR family DNA-binding response regulator
2917	 53.52	0	3272588..3273652	-	354	152981531	-	mma_2917	-	Signal transduction histidine kinase
2918	 52.88	0	3273695..3275101	-	468	152982250	-	mma_2918	-	hypothetical protein
2919	 50.58	-1	3275346..3275774	-	142	152982391	usp2	mma_2919	-	universal stress protein (Usp)
2920	 54.98	0	3275803..3276495	-	230	152981754	-	mma_2920	-	TerC family integral membrane protein
2921	 57.25	0	3276621..3278033	-	470	152982775	-	mma_2921	-	two-components system response regulator
2922	 56.52	0	3278008..3278697	-	229	152981323	ompR6	mma_2922	-	two components system response regulator
2923	 59.19	+1	3278910..3280247	+	445	152981688	-	mma_2923	-	6-aminohexanoate-dimer hydrolase
2924	 54.73	0	3280388..3281443	+	351	152982125	-	mma_2924	-	hypothetical protein
2925	 53.25	0	3281534..3282025	-	163	152981507	ohr1	mma_2925	-	organic hydroperoxide resistance protein
2926	 51.02	0	3282143..3282634	-	163	152982016	-	mma_2927	-	MarR family transcriptional regulator
2927	 48.10	-1	3282618..3282827	+	69	152982992	-	mma_2926	-	hypothetical protein
2928	 55.79	0	3282837..3283553	+	238	152981154	trmB	mma_2928	-	tRNA (guanine-N7-)-methyltransferase
2929	 55.32	0	3283567..3285390	-	607	152980056	recQ	mma_2929	-	ATP-dependent DNA helicase
2930	 54.20	0	3285400..3286233	-	277	152979814	bacA	mma_2930	-	undecaprenol kinase
2931	 58.33	0	3286471..3286998	-	175	152982993	-	mma_2931	-	hypothetical protein
2932	 54.22	0	3287116..3287766	+	216	152981335	pcm2	mma_2932	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
2933	 59.57	+1	3287776..3288099	+	107	152981948	-	mma_2933	-	hypothetical protein
2934	 56.63	0	3288152..3289456	+	434	152981557	tolC6	mma_2934	-	outer membrane protein, tolC-like
2935	 54.36	0	3289501..3290142	-	213	152982014	acrR	mma_2935	-	TetR/AcrR family transcriptional regulator
2936	 59.50	+1	3290388..3291656	+	422	152981741	acrA5	mma_2936	-	acriflavin resistance lipoprotein A precursor
2937	 55.33	0	3291669..3294818	+	1049	152980474	acrB3	mma_2937	-	acriflavin resistance transmembrane protein
2938	 57.54	0	3294818..3296263	+	481	152981001	-	mma_2938	-	drug efflux lipoprotein
2939	 49.83	-1	3296361..3296657	-	98	152982723	-	mma_2939	-	hypothetical protein
2940	 53.11	0	3296853..3297383	+	176	152982205	-	mma_2940	-	hypothetical protein
2941	 54.85	0	3297482..3297811	+	109	152982994	-	mma_2941	-	virulence protein
2942	 57.92	0	3297836..3299104	-	422	152980275	kdta	mma_2942	-	3-deoxy-D-manno-octulosonic-acid transferase
2943	 55.92	0	3299284..3300660	-	458	152981058	algC	mma_2943	-	phosphomannomutase
2944	 56.61	0	3300962..3301786	+	274	152982132	apaH	mma_2944	-	diadenosine tetraphosphatase
2945	 55.02	0	3301783..3302529	-	248	152980297	plsC2	mma_2945	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2946	 59.11	+1	3302604..3303887	-	427	152981059	pyrC2	mma_2946	-	dihydroorotase, multifunctional complex type
2947	 54.90	0	3303892..3304851	-	319	152980634	pyrB	mma_2947	-	aspartate carbamoyltransferase catalytic chain
2948	 54.96	0	3304844..3305407	-	187	152981536	pyrR1	mma_2948	-	pyrimidine regulatory protein PyrR
2949	 53.03	0	3305343..3305738	-	131	152981739	ruvX	mma_2949	-	Hollyday junction resolvase
2950	 57.66	0	3305754..3306419	-	221	152981307	-	mma_2950	-	transcriptional regulator
2951	 58.27	0	3306533..3308020	+	495	152981216	phrB	mma_2951	-	deoxyribodipyrimidine photo-lyase
2952	 55.98	0	3308067..3313772	-	1901	152980997	-	mma_2952	-	two-component hybrid sensor and regulator
2953	 55.37	0	3313994..3316276	-	760	152981516	pilJ	mma_2953	-	PilJ twitching motility protein
2954	 57.12	0	3316329..3316904	-	191	152981964	pilI	mma_2954	-	PilI twitching motility protein
2955	 51.37	0	3316915..3317280	-	121	152982489	pilH	mma_2955	-	twitching motility two-component response regulator transcription regulator protein
2956	 51.99	0	3317301..3317702	-	133	152982173	pilG	mma_2956	-	PilG twitching motility two-component system response regulator
2957	 55.38	0	3317854..3318048	-	64	152983300	rubA	mma_2957	-	rubredoxin
2958	 57.83	0	3318103..3318951	+	282	152981526	thiD2	mma_2958	-	phosphomethylpyrimidine kinase
2959	 59.89	+1	3318985..3320283	+	432	152979840	hemL	mma_2959	-	glutamate-1-semialdehyde 2,1-aminomutase
2960	 53.62	0	3320326..3321291	-	321	152980712	corA2	mma_2960	-	Mg2+/Co2+ transporter
2961	 53.88	0	3321713..3322408	-	231	152982155	mtgA	mma_2961	-	monofunctional biosynthetic peptidoglycan transglycosylase
2962	 57.42	0	3322500..3323321	-	273	152980054	aroE	mma_2962	-	shikimate 5-dehydrogenase
2963	 53.44	0	3323322..3324236	-	304	152980914	-	mma_2963	-	hypothetical protein
2964	 55.91	0	3324291..3326345	-	684	152982558	-	mma_2964	-	exoribonuclease R
2965	 60.36	+1	3326456..3327073	-	205	152980471	ubiC	mma_2965	-	chorismate--pyruvate lyase
2966	 56.24	0	3327043..3327627	-	194	152981432	-	mma_2966	-	hypothetical protein
2967	 57.21	0	3327624..3328997	-	457	152980991	mpl	mma_2967	-	UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
2968	 53.48	0	3329012..3329686	+	224	152982804	-	mma_2968	-	hypothetical protein
2969	 55.94	0	3329689..3330210	+	173	152982711	-	mma_2969	-	thioredoxin-related transmembrane protein
2970	 52.28	0	3330294..3330731	+	145	152980561	aroQ	mma_2970	-	3-dehydroquinate dehydratase II
2971	 55.27	0	3330811..3331275	+	154	152980262	fabE	mma_2971	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase
2972	 55.73	0	3331372..3332733	+	453	152981095	accC	mma_2972	-	biotin carboxylase
2973	 58.52	0	3332877..3333809	+	310	152980437	prmA	mma_2973	-	ribosomal protein L11 methyltransferase
2974	 56.60	0	3333748..3334989	+	413	152982692	-	mma_2974	-	hypothetical protein
2975	 54.77	0	3335075..3336007	+	310	152980922	pfkB	mma_2975	-	sugar kinase
2976	 59.12	+1	3336060..3336602	-	180	152982148	-	mma_2976	-	hypothetical protein
2977	 45.13	-2	3336695..3337330	-	211	152983390	bph1	mma_2977	-	histone H1 protein
2978	 51.65	0	3337821..3338999	-	392	152980709	nrdF	mma_2978	-	ribonucleotide-diphosphate reductase subunit beta
2979	 54.60	0	3339183..3342074	-	963	152979866	nrdA	mma_2979	-	ribonucleotide-diphosphate reductase subunit alpha
2980	 54.72	0	3342459..3343094	-	211	152980729	ampD	mma_2980	-	N-acetyl-anhydromuranmyl-L-alanine amidase
2981	 58.69	0	3343081..3344496	-	471	152979868	pilR	mma_2981	-	two-components system response regulator
2982	 56.55	0	3344526..3346226	-	566	152980591	pilS	mma_2982	-	two-component system sensor kinase
2983	 59.17	+1	3346230..3346469	-	79	152983301	-	mma_2983	-	hypothetical protein
2984	 54.94	0	3346466..3347275	-	269	152981551	-	mma_2984	-	ABC-type transport system, permease component
2985	 57.46	0	3347620..3348987	+	455	152980389	ffh	mma_2985	-	signal recognition particle, subunit SRP54
2986	 48.75	-1	3349347..3349787	+	146	152982995	-	mma_2986	-	hypothetical protein
2987	 58.94	+1	3349865..3350692	-	275	152981989	-	mma_2987	-	hypothetical protein
2988	 56.11	0	3350625..3352358	-	577	152981235	proS	mma_2988	-	prolyl-tRNA synthetase
2989	 57.44	0	3352561..3353145	+	194	152982856	nudH	mma_2989	-	dinucleoside polyphosphate hydrolase
2990	 53.72	0	3353138..3353701	+	187	152982744	-	mma_2990	-	hypothetical protein
2991	 57.82	0	3353741..3354859	-	372	152980673	proB	mma_2991	-	gamma-glutamyl kinase
2992	 53.78	0	3354947..3356056	-	369	152981094	-	mma_2992	-	GTPase ObgE
2993	 51.94	0	3356148..3356405	-	85	152983167	rpmA	mma_2993	-	50S ribosomal protein L27
2994	 48.40	-1	3356444..3356755	-	103	152980719	rplU	mma_2994	-	large subunit ribosomal protein L21
2995	 55.92	0	3356982..3357986	+	334	152980282	ispB	mma_2995	-	octaprenyl-diphosphate synthase
2996	 56.41	0	3358230..3359915	+	561	152980438	pilB	mma_2996	-	PilB type IV pilus assembly protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.