IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2431	 53.09	0	2757164..2758894	+	576	152982966	-	mma_2431	-	mechanosensitive ion channel protein
2432	 45.66	-2	2758966..2759322	+	118	152982967	-	mma_2432	-	hypothetical protein
2433	 54.41	0	2759557..2760168	-	203	152980210	ribE	mma_2433	-	riboflavin synthase subunit alpha
2434	 58.33	0	2760186..2761277	-	363	152980375	ribD	mma_2434	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
2435	 57.69	0	2761329..2761874	-	181	152980812	fimT	mma_2435	-	FimT type IV pilus assembly protein
2436	 53.33	0	2761861..2762265	-	134	152980811	pilE1	mma_2436	-	PilE type IV pilus assembly protein
2437	 55.07	0	2762292..2762972	-	226	152980810	pilX1	mma_2437	-	PilX type IV pilus assembly protein
2438	 55.23	0	2763035..2763952	-	305	152980809	pilW1	mma_2438	-	PilW type IV pilus assembly protein
2439	 56.06	0	2763991..2764452	-	153	152982968	-	mma_2439	-	hypothetical protein
2440	 54.76	0	2764643..2765524	-	293	152982626	-	mma_2440	-	transporter of the DMT superfamily
2441	 52.66	0	2765557..2765913	-	118	152982368	-	mma_2441	-	hypothetical protein
2442	 56.20	0	2765910..2766377	-	155	152981422	-	mma_2442	-	transcriptional regulator
2443	 54.54	0	2766577..2767821	-	414	152980047	glyA	mma_2443	-	glycine hydroxymethyltransferase
2444	 54.12	0	2768301..2769065	+	254	152980157	xthA2	mma_2444	-	exodeoxyribonuclease III
2445	 52.30	0	2769080..2769601	-	173	152981583	pat	mma_2445	-	phosphinothricin N-acetyltransferase
2446	 54.17	0	2769784..2770767	-	327	152980808	tctC10	mma_2446	-	tricarboxylate binding receptor
2447	 51.69	0	2770983..2771336	-	117	152982633	-	mma_2447	-	hypothetical protein
2448	 53.57	0	2771350..2771601	-	83	152983283	-	mma_2448	-	hypothetical protein
2449	 53.73	0	2771624..2772280	-	218	152982772	-	mma_2449	-	hypothetical protein
2450	 53.61	0	2772319..2773260	-	313	152980807	cysB1	mma_2450	-	transcriptional regulator CysB-like protein
2451	 56.07	0	2773419..2774192	+	257	152982072	-	mma_2451	-	hypothetical protein
2452	 56.28	0	2774202..2775896	+	564	152979850	cysI	mma_2452	-	sulfite reductase (NADPH) hemoprotein beta-component
2453	 55.49	0	2775889..2776416	+	175	152981554	-	mma_2453	-	hypothetical protein
2454	 60.41	+1	2776413..2777147	+	244	152980603	cysH	mma_2454	-	phosphoadenosine phosphosulfate reductase
2455	 56.94	0	2777154..2778089	+	311	152980009	cysD	mma_2455	-	sulfate adenylyltransferase subunit 2
2456	 56.98	0	2778089..2779420	+	443	152979899	cysN	mma_2456	-	sulfate adenylyltransferase subunit 1
2457	 59.44	+1	2779441..2780160	+	239	152980720	cysG	mma_2457	-	uroporphyrin-III C-methyltransferase
2458	 58.33	0	2780167..2780538	-	123	152981944	-	mma_2458	-	hypothetical protein
2459	 53.26	0	2780538..2781686	-	382	152981500	-	mma_2459	-	hypothetical protein
2460	 55.61	0	2781683..2782813	-	376	152981611	-	mma_2460	-	hypothetical protein
2461	 58.61	0	2782853..2784367	+	504	152980570	pepA	mma_2461	-	leucyl aminopeptidase
2462	 58.77	0	2784474..2785220	+	248	152981275	-	mma_2462	-	short-chain alcohol dehydrogenase
2463	 54.36	0	2785422..2785868	+	148	152980806	ybgC	mma_2463	-	Tol-Pal cell envelope complex subunit YbgC
2464	 57.86	0	2785947..2786639	+	230	152980246	tolQ	mma_2464	-	biopolymer transport protein
2465	 56.46	0	2786651..2787091	+	146	152980805	tolR	mma_2465	-	biopolymer transport protein TolR
2466	 56.43	0	2787102..2787980	+	292	152982653	tolA	mma_2466	-	TolA-related transport transmembrane protein
2467	 57.39	0	2787984..2789255	+	423	152980804	tolB	mma_2467	-	periplasmic component of the Tol biopolymer transport system
2468	 52.35	0	2789314..2789823	+	169	152980803	pal	mma_2468	-	peptidoglycan-associated lipoprotein
2469	 53.55	0	2789835..2790566	+	243	152981712	ybgF	mma_2469	-	Tol-Pal cell envelope complex subunit YbgF
2470	 44.04	-2	2791196..2791774	-	192	152983182	-	mma_2470	-	hypothetical protein
2471	 49.10	-1	2792262..2792540	-	92	152982623	-	mma_2471	-	hypothetical protein
2472	 54.82	0	2792678..2793040	-	120	152982601	-	mma_2472	-	hypothetical protein
2473	 54.21	0	2793373..2795451	+	692	152981977	-	mma_2473	-	autotransporter
2474	 54.85	0	2795682..2797814	+	710	152981775	-	mma_2474	-	autotransporter
2475	 57.34	0	2798268..2800379	+	703	152981932	-	mma_2475	-	autotransporter
2476	 54.16	0	2800465..2803038	+	857	152982347	-	mma_2476	-	hemagglutinin-related protein
2477	 56.37	0	2803107..2803883	-	258	152982667	-	mma_2477	-	glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase)
2478	 56.73	0	2804023..2804958	+	311	152980802	gcvA	mma_2478	-	LysR family transcriptional regulator
2479	 55.56	0	2805006..2805626	-	206	152980801	-	mma_2479	-	hypothetical protein
2480	 55.42	0	2805626..2806576	-	316	152979847	-	mma_2480	-	nitrilase
2481	 55.54	0	2806593..2808227	-	544	152980800	-	mma_2481	-	major facilitator superfamily sugar transporter
2482	 55.71	0	2808294..2809352	+	352	152980799	iclR1	mma_2482	-	IclR family transcriptional regulator
2483	 55.14	0	2809398..2810282	-	294	152980798	tauC	mma_2483	-	ABC-type sulfonate/nitrate transport system permease protein
2484	 56.27	0	2810279..2811163	-	294	152980243	tauB	mma_2484	-	sulfonate/nitrate transport system ATP-binding protein
2485	 53.64	0	2811222..2812265	-	347	152980797	tauA	mma_2485	-	ABC-type sulfonate/nitrate transport system substrate-binding protein
2486	 54.81	0	2812312..2813205	-	297	152980139	tauD	mma_2486	-	taurine dioxygenase
2487	 55.18	0	2813377..2814342	-	321	152980310	cysE3	mma_2487	-	serine O-acetyltransferase
2488	 43.70	-2	2814992..2815126	+	44	152983284	ecnB	mma_2488	-	entericidin B precursor
2489	 55.56	0	2815243..2815701	-	152	152982011	-	mma_2489	-	hypothetical protein
2490	 55.27	0	2816007..2817041	-	344	152980796	dusA	mma_2490	-	tRNA-dihydrouridine synthase A
2491	 58.86	+1	2817193..2818512	+	439	152979966	-	mma_2491	-	beta alanine--pyruvate transaminase
2492	 52.69	0	2818624..2820462	-	612	152980795	typA	mma_2492	-	GTP-binding elongation factor
2493	 57.35	0	2820648..2821592	-	314	152980517	truB	mma_2493	-	tRNA pseudouridine synthase B
2494	 56.07	0	2821708..2822094	-	128	152980431	rbfA	mma_2494	-	ribosome-binding factor A
2495	 55.12	0	2822212..2825025	-	937	152980794	infB	mma_2495	-	translation initiation factor IF-2
2496	 53.40	0	2825076..2826635	-	519	152980158	nusA	mma_2496	-	N utilization substance protein A
2497	 50.68	0	2826632..2827144	-	170	152981795	-	mma_2497	-	hypothetical protein
2498	 59.72	+1	2827416..2829056	-	546	152981088	-	mma_2498	-	ribosomal large subunit pseudouridine synthase B
2499	 52.43	0	2829034..2830002	-	322	152981579	scpB	mma_2499	-	segregation and condensation protein B
2500	 51.54	0	2830292..2830972	+	226	152981884	-	mma_2500	-	NUDIX hydrolase
2501	 57.11	0	2831089..2832501	-	470	152981296	-	mma_2501	-	N-ethylammeline chlorohydrolase
2502	 55.41	0	2832525..2833919	-	464	152980057	pbuX5	mma_2502	-	xanthine permease
2503	 56.71	0	2834031..2834864	-	277	152980934	-	mma_2503	-	hypothetical protein
2504	 54.74	0	2834867..2835931	-	354	152981997	-	mma_2504	-	hypothetical protein
2505	 54.08	0	2835945..2836691	-	248	152981525	-	mma_2505	-	dehydrogenase/reductase family protein
2506	 55.18	0	2836733..2837716	-	327	152981490	-	mma_2506	-	vanB family oxidoreductase/oxygenase,
2507	 53.41	0	2837995..2838975	-	326	152981716	-	mma_2507	-	porin
2508	 53.86	0	2839004..2840533	-	509	152980793	pbuX6	mma_2508	-	xanthine permease
2509	 52.61	0	2840952..2841869	+	305	152980792	lysR3	mma_2509	-	LysR family transcriptional regulator
2510	 53.03	0	2841944..2843146	-	400	152980791	amtB3	mma_2510	-	ammonium transporter
2511	 56.46	0	2843327..2844061	+	244	152980526	aat	mma_2511	-	leucyl/phenylalanyl-tRNA--protein transferase
2512	 55.33	0	2844144..2844893	+	249	152980790	ate1	mma_2512	-	arginyl-tRNA-protein transferase
2513	 58.67	0	2844968..2846005	+	345	152980020	pyrD	mma_2513	-	dihydroorotate dehydrogenase 2
2514	 52.95	0	2846096..2848399	-	767	152980685	clpA	mma_2514	-	ATP-dependent Clp protease ATP-binding subunit ClpA
2515	 47.57	-1	2848396..2848704	-	102	152983115	clpS	mma_2515	-	ATP-dependent Clp protease adaptor protein ClpS
2516	 49.02	-1	2849040..2849243	+	67	152983285	cspD2	mma_2516	-	cold-shock DNA-binding domain-containing protein
2517	 55.82	0	2849423..2850058	+	211	152980789	-	mma_2517	-	pseudouridylate synthase family protein
2518	 55.48	0	2850168..2850623	+	151	152981698	-	mma_2518	-	hypothetical protein
2519	 51.14	0	2850721..2850984	-	87	152983166	rpsT	mma_2519	-	small subunit ribosomal protein S20
2520	 57.38	0	2851336..2852886	+	516	152979789	mviN	mma_2520	-	virulence factor MviN
2521	 52.86	0	2852956..2853795	+	279	152980788	-	mma_2521	-	hypothetical protein
2522	 55.89	0	2853839..2855749	-	636	152980787	uup	mma_2522	-	ATP-binding ABC transporter protein
2523	 34.07	-2	2856143..2857087	+	314	152983404	-	mma_2523	-	hypothetical protein
2524	 36.78	-2	2857092..2857526	+	144	152983403	-	mma_2524	-	hypothetical protein
2525	 36.73	-2	2857575..2857898	+	107	152983402	-	mma_2525	-	hypothetical protein
2526	 35.44	-2	2857931..2858548	-	205	152983401	-	mma_2526	-	hypothetical protein
2527	 29.85	-2	2858704..2859162	+	152	152983400	-	mma_2527	-	hypothetical protein
2528	 31.46	-2	2859137..2859457	+	106	152983399	-	mma_2528	-	hypothetical protein
2529	 36.94	-2	2859454..2860728	+	424	152983398	-	mma_2529	-	hypothetical protein
2530	 34.04	-2	2860742..2861167	+	141	152983397	-	mma_2530	-	hypothetical protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.