IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2350	 59.32	+1	2633831..2634211	+	126	152980829	fecI9	mma_2350	-	ECF subfamily RNA polymerase sigma factor
2351	 59.55	+1	2634190..2635173	+	327	152980828	fecR9	mma_2351	-	Fe2+-dicitrate sensor, membrane component
2352	 56.58	0	2635275..2637773	+	832	152980827	fhuE2	mma_2352	-	outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
2353	 56.17	0	2637815..2639215	-	466	152980826	czcS	mma_2353	-	heavy metal sensor kinase
2354	 53.87	0	2639212..2639883	-	223	152980825	czcR2	mma_2354	-	heavy metal response regulator
2355	 48.67	-1	2640083..2640421	+	112	152982170	-	mma_2355	-	hypothetical protein
2356	 54.28	0	2640517..2641533	-	338	152980824	wcaA	mma_2356	-	glycosyltransferase involved in cell wall biogenesis
2357	 54.04	0	2641691..2642086	-	131	152982789	-	mma_2357	-	hypothetical protein
2358	 53.03	0	2642238..2642699	-	153	152982551	-	mma_2358	-	AraC family transcriptional regulator
2359	 57.47	0	2643443..2645866	+	807	152981511	-	mma_2359	-	autotransporter
2360	 52.21	0	2646051..2647067	+	338	152982501	-	mma_2360	-	AraC family transcriptional regulator
2361	 58.00	0	2647148..2658439	-	3763	152982147	ugp3	mma_2361	-	hypothetical protein
2362	 59.14	+1	2658638..2659633	-	331	152980823	fecR10	mma_2362	-	Fe2+-dicitrate sensor, membrane component
2363	 59.50	+1	2659715..2660230	-	171	152980822	fecI10	mma_2363	-	ECF subfamily RNA polymerase sigma factor
2364	 57.62	0	2660273..2660935	-	220	152982320	-	mma_2364	-	hypothetical protein
2365	 58.08	0	2661119..2662480	-	453	152980821	mucD2	mma_2365	-	periplasmic serine protease
2366	 55.95	0	2662484..2662987	-	167	152982602	-	mma_2366	-	hypothetical protein
2367	 64.34	+2	2663016..2663747	-	243	152982751	-	mma_2367	-	hypothetical protein
2368	 58.18	0	2663909..2676499	-	4196	152982731	ugp4	mma_2368	-	hypothetical protein
2369	 59.38	+1	2676720..2677721	-	333	152980820	fecR11	mma_2369	-	Fe2+-dicitrate sensor, membrane component
2370	 61.39	+1	2677824..2678354	-	176	152982707	fecI11	mma_2370	-	ECF subfamily RNA polymerase sigma factor
2371	 57.75	0	2678354..2679037	-	227	152982642	-	mma_2371	-	hypothetical protein
2372	 57.95	0	2679184..2679447	-	87	152982767	-	mma_2372	-	hypothetical protein
2373	 58.29	0	2679503..2680027	-	174	152982702	-	mma_2373	-	hypothetical protein
2374	 58.77	0	2680102..2681025	-	307	152980819	ppiC	mma_2374	-	peptidyl-prolyl cis-trans isomerase, PpiC-type
2375	 57.46	0	2681088..2681771	-	227	152982171	-	mma_2375	-	hypothetical protein
2376	 56.35	0	2681783..2683576	-	597	152982583	-	mma_2376	-	hypothetical protein
2377	 60.75	+1	2683624..2684316	-	230	152982092	-	mma_2377	-	hypothetical protein
2378	 56.20	0	2684327..2684737	-	136	152980818	exbD4	mma_2378	-	ExbD transport protein
2379	 59.52	+1	2684751..2686526	-	591	152980817	exbB3	mma_2379	-	ExbB transport protein
2380	 56.79	0	2686595..2688235	-	546	152980816	fhaC5	mma_2380	-	hemolysin activation/secretion protein
2381	 57.54	0	2688507..2689634	-	375	152982257	-	mma_2381	-	hypothetical protein
2382	 57.03	0	2689552..2701275	-	3907	152982724	ugp5	mma_2382	-	hypothetical protein
2383	 59.23	+1	2701455..2702435	-	326	152980815	fecR12	mma_2383	-	Fe2+-dicitrate sensor, membrane component
2384	 54.64	0	2702452..2703000	-	182	152980814	fecI12	mma_2384	-	ECF subfamily RNA polymerase sigma factor
2385	 57.82	0	2703003..2703635	-	210	152982616	-	mma_2385	-	hypothetical protein
2386	 56.34	0	2703941..2704279	+	112	152982796	-	mma_2386	-	hypothetical protein
2387	 59.16	+1	2704857..2705882	+	341	152981061	tctC9	mma_2387	-	tricarboxylate binding receptor
2388	 56.55	0	2705923..2707158	+	411	152981233	-	mma_2388	-	hypothetical protein
2389	 57.78	0	2707155..2707559	+	134	152982040	-	mma_2389	-	hypothetical protein
2390	 53.30	0	2707611..2708276	-	221	152982459	-	mma_2390	-	Cro/CI family transcriptional regulator
2391	 52.50	0	2708279..2708899	-	206	152982839	-	mma_2391	-	AraC family transcriptional regulator
2392	 56.85	0	2709139..2710452	+	437	152982759	shiA2	mma_2392	-	shikimate transporter ShiA
2393	 51.40	0	2710496..2710888	+	130	152982118	-	mma_2393	-	hypothetical protein
2394	 51.59	0	2710908..2711252	+	114	152982480	fdxA3	mma_2394	-	ferredoxin
2395	 59.56	+1	2711783..2713147	-	454	152982191	phoQ	mma_2395	-	two component sensor histidine kinase
2396	 59.76	+1	2713144..2713809	-	221	152981423	phoP	mma_2396	-	two-components system response regulator
2397	 53.47	0	2713822..2714124	-	100	152982080	-	mma_2397	-	hypothetical protein
2398	 55.05	0	2714247..2714573	+	108	152982738	-	mma_2398	-	hypothetical protein
2399	 53.33	0	2714676..2715395	-	239	152982225	-	mma_2399	-	short chain dehydrogenase
2400	 55.62	0	2715492..2715989	+	165	152981772	-	mma_2400	-	transcriptional regulator
2401	 52.57	0	2716108..2717100	-	330	152982421	-	mma_2401	-	AraC family transcriptional regulator
2402	 51.72	0	2717639..2720227	+	862	152981521	-	mma_2402	-	autotransporter
2403	 57.46	0	2720271..2722463	-	730	152980893	-	mma_2403	-	patatin-like phospholipase
2404	 56.66	0	2722476..2723444	-	322	152982758	-	mma_2404	-	hypothetical protein
2405	 59.43	+1	2723456..2724712	-	418	152982326	-	mma_2405	-	hypothetical protein
2406	 53.50	0	2724783..2725640	-	285	152982681	-	mma_2406	-	hypothetical protein
2407	 59.96	+1	2725744..2728248	-	834	152982185	-	mma_2407	-	autotransporter
2408	 52.89	0	2728377..2729378	-	333	152982542	-	mma_2408	-	nonspecific acid phosphatase precursor
2409	 58.03	0	2729440..2730435	-	331	152981439	-	mma_2409	-	hypothetical protein
2410	 50.61	0	2730478..2730888	-	136	152982404	-	mma_2410	-	hypothetical protein
2411	 56.89	0	2730924..2732672	-	582	152980813	sul1	mma_2411	-	sulfate transporter
2412	 52.00	0	2732787..2734334	-	515	152980750	aslA1	mma_2412	-	arylsulfatase
2413	 54.94	0	2734452..2734937	-	161	152982057	-	mma_2413	-	hypothetical protein
2414	 57.57	0	2734973..2736346	-	457	152982483	-	mma_2414	-	hypothetical protein
2415	 56.71	0	2736533..2737225	-	230	152982834	-	mma_2415	-	hypothetical protein
2416	 56.56	0	2737299..2738465	-	388	152982811	-	mma_2416	-	hypothetical protein
2417	 55.24	0	2738475..2739419	-	314	152981830	-	mma_2417	-	hypothetical protein
2418	 51.09	0	2739455..2739775	+	106	152982962	-	mma_2418	-	hypothetical protein
2419	 54.01	0	2739779..2740165	+	128	152982809	-	mma_2419	-	hypothetical protein
2420	 59.38	+1	2740179..2740727	+	182	152982193	-	mma_2420	-	hypothetical protein
2421	 53.30	0	2741061..2741741	+	226	152981398	-	mma_2421	-	two-components system response regulator
2422	 53.40	0	2741888..2743651	+	587	152982333	-	mma_2422	-	two-component sensor histidine kinase
2423	 51.79	0	2743648..2744622	-	324	152982748	-	mma_2423	-	hypothetical protein
2424	 51.90	0	2745051..2746574	-	507	152979837	aslA2	mma_2424	-	arylsulfatase
2425	 57.38	0	2747018..2750311	+	1097	152982046	-	mma_2425	-	autotransporter
2426	 55.05	0	2750333..2751520	-	395	152982338	-	mma_2426	-	hypothetical protein
2427	 51.65	0	2751688..2753205	+	505	152982963	-	mma_2427	-	hypothetical protein
2428	 53.06	0	2753237..2754316	-	359	152982964	-	mma_2428	-	hypothetical protein
2429	 48.77	-1	2754357..2755211	-	284	152982965	-	mma_2429	-	mechanosensitive ion channel protein
2430	 47.97	-1	2755297..2756799	-	500	152980036	aslA3	mma_2430	-	arylsulfatase
2431	 53.09	0	2757164..2758894	+	576	152982966	-	mma_2431	-	mechanosensitive ion channel protein
2432	 45.66	-2	2758966..2759322	+	118	152982967	-	mma_2432	-	hypothetical protein
2433	 54.41	0	2759557..2760168	-	203	152980210	ribE	mma_2433	-	riboflavin synthase subunit alpha
2434	 58.33	0	2760186..2761277	-	363	152980375	ribD	mma_2434	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
2435	 57.69	0	2761329..2761874	-	181	152980812	fimT	mma_2435	-	FimT type IV pilus assembly protein
2436	 53.33	0	2761861..2762265	-	134	152980811	pilE1	mma_2436	-	PilE type IV pilus assembly protein
2437	 55.07	0	2762292..2762972	-	226	152980810	pilX1	mma_2437	-	PilX type IV pilus assembly protein
2438	 55.23	0	2763035..2763952	-	305	152980809	pilW1	mma_2438	-	PilW type IV pilus assembly protein
2439	 56.06	0	2763991..2764452	-	153	152982968	-	mma_2439	-	hypothetical protein
2440	 54.76	0	2764643..2765524	-	293	152982626	-	mma_2440	-	transporter of the DMT superfamily
2441	 52.66	0	2765557..2765913	-	118	152982368	-	mma_2441	-	hypothetical protein
2442	 56.20	0	2765910..2766377	-	155	152981422	-	mma_2442	-	transcriptional regulator
2443	 54.54	0	2766577..2767821	-	414	152980047	glyA	mma_2443	-	glycine hydroxymethyltransferase
2444	 54.12	0	2768301..2769065	+	254	152980157	xthA2	mma_2444	-	exodeoxyribonuclease III
2445	 52.30	0	2769080..2769601	-	173	152981583	pat	mma_2445	-	phosphinothricin N-acetyltransferase
2446	 54.17	0	2769784..2770767	-	327	152980808	tctC10	mma_2446	-	tricarboxylate binding receptor
2447	 51.69	0	2770983..2771336	-	117	152982633	-	mma_2447	-	hypothetical protein
2448	 53.57	0	2771350..2771601	-	83	152983283	-	mma_2448	-	hypothetical protein
2449	 53.73	0	2771624..2772280	-	218	152982772	-	mma_2449	-	hypothetical protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.