IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2271	 45.95	-2	2544002..2544619	-	205	152983113	hisH1	mma_2271	-	glutamine amidotransferase
2272	 46.25	-2	2544612..2545664	-	350	152983178	-	mma_2272	-	putative carbamoyl phosphate synthase large subunit
2273	 49.57	-1	2545686..2546855	-	389	152982956	-	mma_2273	-	C-methyltransferase
2274	 42.74	-2	2546884..2547585	-	233	152983179	-	mma_2274	-	hypothetical protein
2275	 46.18	-2	2547551..2548492	-	313	152983180	-	mma_2275	-	UDP-glucose 4-epimerase
2276	 46.70	-1	2548495..2549586	-	363	152982957	spsCA	mma_2276	-	spore coat biosynthesis protein
2277	 44.58	-2	2549583..2550560	-	325	152983181	-	mma_2277	-	UDP-glucose 4-epimerase
2278	 48.07	-1	2550557..2551513	-	318	152982958	-	mma_2278	-	hypothetical protein
2279	 46.20	-2	2551513..2552025	-	170	152982959	-	mma_2279	-	hypothetical protein
2280	 47.50	-1	2552022..2553143	-	373	152983114	wecE2	mma_2280	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
2281	 48.58	-1	2553329..2555479	-	716	152982960	-	mma_2281	-	oxidoreductase
2282	 45.51	-2	2555476..2556723	-	415	152980151	wecC	mma_2282	-	NDP-N-acetyl-d-galactosaminuronic acid dehydrogenase oxidoreductase
2283	 47.82	-1	2556720..2557844	-	374	152980084	wecB2	mma_2283	-	UDP-N-acetylglucosamine 2-epimerase
2284	 41.26	-2	2557837..2558202	-	121	152983281	-	mma_2284	-	MarR family transcriptional regulator
2285	 54.65	0	2558390..2559721	-	443	152980724	phoR	mma_2285	-	two-component system sensor kinase of the phosphate regulon
2286	 54.06	0	2559739..2560428	-	229	152980160	phoB	mma_2286	-	phosphate regulon two-component response regulator
2287	 53.16	0	2560435..2561145	-	236	152980557	phoU	mma_2287	-	phosphate uptake regulator
2288	 53.00	0	2561230..2562012	-	260	152980377	pstB	mma_2288	-	ABC-type phosphate transport system, ATPase component
2289	 53.89	0	2562032..2562892	-	286	152979809	pstA	mma_2289	-	ABC-type phosphate transport system, permease component
2290	 51.70	0	2562889..2563917	-	342	152980621	pstC	mma_2290	-	ABC-type phosphate transport system, permease component
2291	 51.44	0	2564031..2565074	-	347	152980536	pstS	mma_2291	-	ABC-type phosphate transport system substrate-binding protein
2292	 53.79	0	2565139..2567352	+	737	152979904	ppk	mma_2292	-	polyphosphate kinase
2293	 58.61	0	2567357..2567815	+	152	152981860	sixA	mma_2293	-	phosphohistidine phosphatase
2294	 55.96	0	2567821..2568231	-	136	152980849	-	mma_2294	-	hypothetical protein
2295	 52.05	0	2568293..2568634	-	113	152980848	phnA	mma_2295	-	alkylphosphonate uptake protein
2296	 61.39	+1	2568891..2570066	+	391	152982329	-	mma_2296	-	hypothetical protein
2297	 58.00	0	2570133..2571182	-	349	152980847	-	mma_2297	-	glycosysltransferase
2298	 54.59	0	2571164..2572024	-	286	152980846	-	mma_2298	-	hypothetical protein
2299	 55.73	0	2572021..2572788	-	255	152980845	-	mma_2299	-	hemolysin-like protein
2300	 49.29	-1	2572956..2573732	-	258	152982961	-	mma_2300	-	hypothetical protein
2301	 58.18	0	2573803..2574921	+	372	152981753	-	mma_2301	-	ABC-type branched-chain amino acid transport systems, periplasmic component
2302	 56.83	0	2574937..2575536	-	199	152980844	dedA2	mma_2302	-	dedA family protein
2303	 55.95	0	2575619..2577073	-	484	152980548	ppx	mma_2303	-	exopolyphosphatase
2304	 56.12	0	2577339..2578589	-	416	152980843	-	mma_2304	-	Hsp70/DnaK family protein
2305	 55.15	0	2578813..2579142	+	109	152980842	-	mma_2305	-	hypothetical protein
2306	 56.52	0	2579476..2580342	+	288	152980841	-	mma_2306	-	metallo-beta-lactamase superfamily protein
2307	 55.71	0	2580517..2582616	+	699	152980840	-	mma_2307	-	sensory box/GGDEF family protein
2308	 56.10	0	2582666..2583337	-	223	152979997	rpiA	mma_2308	-	ribose 5-phosphate isomerase A
2309	 56.01	0	2583452..2585206	-	584	152980839	-	mma_2309	-	antiporter-2, CPA2 family monovalent cation/proton antiporter
2310	 61.35	+1	2585971..2586591	-	206	152980522	eda	mma_2310	-	2-dehydro-3-deoxyphosphogluconate aldolase
2311	 59.67	+1	2586594..2588522	-	642	152980587	edd	mma_2311	-	phosphogluconate dehydratase
2312	 56.00	0	2588840..2590480	+	546	152980462	pgi	mma_2312	-	glucose-6-phosphate isomerase
2313	 56.67	0	2590526..2591995	+	489	152980461	zwf	mma_2313	-	glucose-6-phosphate 1-dehydrogenase
2314	 58.65	0	2592011..2592871	+	286	152980245	-	mma_2314	-	RpiR family transcriptional regulator
2315	 54.49	0	2592963..2593898	+	311	152980586	tal	mma_2315	-	transaldolase B
2316	 53.49	0	2594047..2595435	-	462	152980838	-	mma_2316	-	major facilitator transporter
2317	 50.73	0	2595723..2596337	-	204	152981976	-	mma_2317	-	hypothetical protein
2318	 54.09	0	2596334..2597701	-	455	152980837	purA2	mma_2318	-	adenylosuccinate synthase
2319	 58.17	0	2597701..2598171	-	156	152982078	-	mma_2319	-	L-PSP family endoribonuclease
2320	 55.43	0	2598339..2599130	-	263	152982248	-	mma_2320	-	AraC family transcriptional regulator
2321	 50.17	-1	2599223..2600083	+	286	152982769	-	mma_2321	-	hypothetical protein
2322	 57.74	0	2600176..2601105	-	309	152980836	lysR2	mma_2322	-	LysR family transcriptional regulator
2323	 57.66	0	2601287..2602030	+	247	152982823	-	mma_2323	-	3-oxoacyl-(acyl-carrier-protein) reductase
2324	 50.00	-1	2602141..2602362	+	73	152983282	-	mma_2324	-	4-oxalocrotonate tautomerase family protein
2325	 53.97	0	2602441..2602818	-	125	152982180	-	mma_2325	-	hypothetical protein
2326	 57.87	0	2603181..2604317	-	378	152980949	-	mma_2326	-	hypothetical protein
2327	 55.30	0	2604323..2604982	-	219	152981582	-	mma_2327	-	hypothetical protein
2328	 57.96	0	2605035..2605631	-	198	152980835	recR	mma_2328	-	recombinational DNA repair protein (RecF pathway)
2329	 49.85	-1	2605653..2605979	-	108	152980834	-	mma_2329	-	hypothetical protein
2330	 60.04	+1	2606032..2608053	-	673	152979856	dnaX	mma_2330	-	DNA polymerase III gamma and tau subunit
2331	 58.70	0	2608288..2609931	+	547	152980833	acd	mma_2331	-	acyl-CoA dehydrogenase
2332	 57.02	0	2609935..2613024	-	1029	152981031	-	mma_2332	-	drug efflux pump transmembrane protein
2333	 58.11	0	2613093..2614226	-	377	152981804	acrA4	mma_2333	-	membrane fusion protein
2334	 53.07	0	2614360..2614815	+	151	152982077	-	mma_2334	-	MarR family transcriptional regulator
2335	 56.09	0	2615183..2616667	-	494	152980595	ubiD	mma_2335	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2336	 56.91	0	2617172..2618083	+	303	152982375	-	mma_2336	-	hypothetical protein
2337	 58.46	0	2618157..2619338	-	393	152979970	-	mma_2337	-	aspartate/tyrosine/aromatic aminotransferase
2338	 53.93	0	2619450..2619920	-	156	152979861	nusB	mma_2338	-	N utilization substance protein B
2339	 57.06	0	2620012..2620500	-	162	152979909	ribH2	mma_2339	-	riboflavin synthase subunit beta
2340	 57.05	0	2620620..2621732	-	370	152980483	ribBA	mma_2340	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
2341	 61.20	+1	2621879..2622793	-	304	152980832	-	mma_2341	-	LysR family transcriptional regulator
2342	 59.73	+1	2622899..2623777	+	292	152982226	-	mma_2342	-	hydrolase
2343	 59.56	+1	2623789..2625195	+	468	152980040	leuC2	mma_2343	-	isopropylmalate isomerase large subunit
2344	 53.56	0	2625188..2625805	+	205	152980072	leuD2	mma_2344	-	3-isopropylmalate dehydratase small subunit
2345	 55.71	0	2625827..2626693	-	288	152979804	phnD1	mma_2345	-	phosphonate transport system substrate-binding protein
2346	 55.71	0	2626706..2628631	-	641	152981029	-	mma_2346	-	sensory box/GGDEF family protein
2347	 56.31	0	2629442..2630677	-	411	152980831	caiB2	mma_2347	-	formyl-CoA transferase
2348	 57.04	0	2630916..2631881	+	321	152981120	-	mma_2348	-	transcriptional regulator
2349	 55.80	0	2632217..2633467	+	416	152980830	caiB3	mma_2349	-	formyl-coenzyme A transferase
2350	 59.32	+1	2633831..2634211	+	126	152980829	fecI9	mma_2350	-	ECF subfamily RNA polymerase sigma factor
2351	 59.55	+1	2634190..2635173	+	327	152980828	fecR9	mma_2351	-	Fe2+-dicitrate sensor, membrane component
2352	 56.58	0	2635275..2637773	+	832	152980827	fhuE2	mma_2352	-	outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
2353	 56.17	0	2637815..2639215	-	466	152980826	czcS	mma_2353	-	heavy metal sensor kinase
2354	 53.87	0	2639212..2639883	-	223	152980825	czcR2	mma_2354	-	heavy metal response regulator
2355	 48.67	-1	2640083..2640421	+	112	152982170	-	mma_2355	-	hypothetical protein
2356	 54.28	0	2640517..2641533	-	338	152980824	wcaA	mma_2356	-	glycosyltransferase involved in cell wall biogenesis
2357	 54.04	0	2641691..2642086	-	131	152982789	-	mma_2357	-	hypothetical protein
2358	 53.03	0	2642238..2642699	-	153	152982551	-	mma_2358	-	AraC family transcriptional regulator
2359	 57.47	0	2643443..2645866	+	807	152981511	-	mma_2359	-	autotransporter
2360	 52.21	0	2646051..2647067	+	338	152982501	-	mma_2360	-	AraC family transcriptional regulator
2361	 58.00	0	2647148..2658439	-	3763	152982147	ugp3	mma_2361	-	hypothetical protein
2362	 59.14	+1	2658638..2659633	-	331	152980823	fecR10	mma_2362	-	Fe2+-dicitrate sensor, membrane component
2363	 59.50	+1	2659715..2660230	-	171	152980822	fecI10	mma_2363	-	ECF subfamily RNA polymerase sigma factor
2364	 57.62	0	2660273..2660935	-	220	152982320	-	mma_2364	-	hypothetical protein
2365	 58.08	0	2661119..2662480	-	453	152980821	mucD2	mma_2365	-	periplasmic serine protease
2366	 55.95	0	2662484..2662987	-	167	152982602	-	mma_2366	-	hypothetical protein
2367	 64.34	+2	2663016..2663747	-	243	152982751	-	mma_2367	-	hypothetical protein
2368	 58.18	0	2663909..2676499	-	4196	152982731	ugp4	mma_2368	-	hypothetical protein
2369	 59.38	+1	2676720..2677721	-	333	152980820	fecR11	mma_2369	-	Fe2+-dicitrate sensor, membrane component
2370	 61.39	+1	2677824..2678354	-	176	152982707	fecI11	mma_2370	-	ECF subfamily RNA polymerase sigma factor
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.