IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2209	 50.13	-1	2488007..2488804	-	265	152983271	-	mma_2209	-	hypothetical protein
2210	 49.75	-1	2488804..2489400	-	198	152983411	-	mma_2210	-	hypothetical protein
2211	 53.01	0	2489385..2489999	-	204	152982706	-	mma_2211	-	hypothetical protein
2212	 47.08	-1	2489996..2490577	-	193	152983273	-	mma_2212	-	hypothetical protein
2213	 49.33	-1	2490570..2490944	-	124	152983272	-	mma_2213	-	hypothetical protein
2214	 49.83	-1	2490941..2491237	-	98	152982433	-	mma_2214	-	hypothetical protein
2215	 48.40	-1	2491257..2491694	-	145	152983274	-	mma_2215	-	phage N-6-adenine methyltransferase
2216	 52.86	0	2491691..2492110	-	139	152982951	-	mma_2216	-	hypothetical protein
2217	 53.60	0	2492107..2492703	-	198	152982952	-	mma_2217	-	hypothetical protein
2218	 52.24	0	2492796..2492996	-	66	152983275	-	mma_2218	-	phage regulatory protein
2219	 49.18	-1	2493077..2493505	+	142	152983410	-	mma_2219	-	hypothetical protein
2220	 46.06	-2	2493856..2494287	+	143	152983276	-	mma_2220	-	hypothetical protein
2221	 49.36	-1	2494287..2494754	+	155	152983111	-	mma_2221	-	hypothetical protein
2222	 48.46	-1	2495049..2495372	+	107	152982212	-	mma_2222	-	hypothetical protein
2223	 52.62	0	2495398..2495760	+	120	152983409	-	mma_2223	-	hypothetical protein
2224	 59.43	+1	2496016..2496747	+	243	152980852	-	mma_2224	-	pentapeptide repeat-containing protein
2225	 43.59	-2	2496974..2497207	+	77	152983277	-	mma_2225	-	hypothetical protein
2226	 51.35	0	2497312..2497866	+	184	152982953	-	mma_2226	-	hypothetical protein
2227	 52.65	0	2497863..2498240	+	125	152982954	ssb1	mma_2227	-	single-strand DNA-binding protein
2228	 51.78	0	2498243..2498692	+	149	152983279	-	mma_2228	-	hypothetical protein
2229	 54.60	0	2499219..2500088	+	289	152983408	-	mma_2229	-	hypothetical protein
2230	 45.90	-2	2500085..2500474	+	129	152983407	-	mma_2230	-	hypothetical protein
2231	 52.53	0	2500443..2500817	+	124	152983406	-	mma_2231	-	hypothetical protein
2232	 47.44	-1	2500999..2501487	+	162	152983405	-	mma_2232	-	hypothetical protein
2233	 52.77	0	2501960..2502988	+	342	152983278	int	mma_2233	-	phage-related integrase
2234	 53.88	0	2503252..2503509	-	85	152983280	-	mma_2234	-	hypothetical protein
2235	 54.63	0	2504114..2505451	-	445	152980851	mrsA	mma_2235	-	phosphoglucomutase/phosphomannomutase
2236	 55.20	0	2505493..2506329	-	278	152980850	folP	mma_2236	-	dihydropteroate synthase
2237	 54.67	0	2506414..2508297	-	627	152980704	ftsH	mma_2237	-	peptidase M41 (cell division protein)
2238	 48.37	-1	2508424..2509068	-	214	152979916	ftsJ	mma_2238	-	23S rRNA methylase
2239	 56.48	0	2509164..2509634	+	156	152980498	-	mma_2239	-	hypothetical protein
2240	 58.71	0	2509643..2510107	-	154	152980299	-	mma_2240	-	hypothetical protein
2241	 50.63	0	2510107..2510580	-	157	152980351	greA	mma_2241	-	GreA transcription elongation factor
2242	 55.12	0	2510681..2513911	-	1076	152980458	carB	mma_2242	-	carbamoyl-phosphate synthase large chain
2243	 55.93	0	2513904..2515058	-	384	152980732	carA	mma_2243	-	carbamoylphosphate synthase small subunit
2244	 54.66	0	2515342..2515749	-	135	152980228	glcG2	mma_2244	-	GlcG protein
2245	 54.97	0	2515952..2516293	+	113	152982427	-	mma_2245	-	hypothetical protein
2246	 57.40	0	2516307..2517482	-	391	152982727	-	mma_2246	-	chemotaxis related protein
2247	 55.25	0	2517594..2518145	+	183	152979777	-	mma_2247	-	hypothetical protein
2248	 55.23	0	2518182..2519099	-	305	152980300	-	mma_2248	-	patatin-like phospholipase
2249	 53.47	0	2519261..2520298	+	345	152980123	futA	mma_2249	-	ABC-type Fe3+ transport system, periplasmic component
2250	 56.86	0	2520385..2521281	-	298	152979832	rfbD1	mma_2250	-	dTDP-4-dehydrorhamnose reductase
2251	 51.45	0	2521278..2521829	-	183	152980058	rfbC	mma_2251	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2252	 51.72	0	2521826..2522728	-	300	152980566	rfbA	mma_2252	-	dTDP-glucose pyrophosphorylase
2253	 51.05	0	2522826..2523824	-	332	152979841	rfbB	mma_2253	-	dTDP-D-glucose 4,6-dehydratase
2254	 50.20	-1	2523874..2525853	-	659	152980034	-	mma_2254	-	nucleoside-diphosphate sugar epimerases
2255	 45.67	-2	2525860..2526402	-	180	152980050	wcaJ	mma_2255	-	sugar transferases involved in lipopolysaccharide synthesis
2256	 51.76	0	2526429..2527367	-	312	152980613	wcaG	mma_2256	-	nucleoside-diphosphate-sugar epimerases
2257	 49.24	-1	2527422..2528546	-	374	152980115	wecB1	mma_2257	-	UDP-N-acetylglucosamine 2-epimerase
2258	 46.98	-1	2528539..2529549	-	336	152980659	-	mma_2258	-	capsular polysaccharide synthesis enzyme
2259	 48.89	-1	2529557..2530411	-	284	152980065	rfbD2	mma_2259	-	dTDP-4-dehydrorhamnose reductase
2260	 49.71	-1	2530430..2531650	-	406	152980740	-	mma_2260	-	glycosyltransferase
2261	 50.79	0	2531647..2532786	-	379	152980632	-	mma_2261	-	glycosyltransferase
2262	 49.11	-1	2532801..2533751	-	316	152980229	-	mma_2262	-	nucleoside-diphosphate-sugar epimerases
2263	 46.87	-1	2533837..2535144	-	435	152983172	-	mma_2263	-	hypothetical protein
2264	 37.68	-2	2535154..2535981	-	275	152983173	-	mma_2264	-	hypothetical protein
2265	 36.18	-2	2535982..2537283	-	433	152983174	-	mma_2265	-	hypothetical protein
2266	 43.20	-2	2537280..2539538	-	752	152983175	-	mma_2266	-	hypothetical protein
2267	 46.37	-2	2539562..2540857	-	431	152983176	-	mma_2267	-	polysaccharide transport protein
2268	 41.07	-2	2541045..2542091	-	348	152983177	-	mma_2268	-	hypothetical protein
2269	 43.69	-2	2542093..2543241	-	382	152982955	wbpG	mma_2269	-	LPS biosynthesis protein WbpG
2270	 45.80	-2	2543238..2543999	-	253	152983112	hisF1	mma_2270	-	imidazoleglycerol phosphate synthase
2271	 45.95	-2	2544002..2544619	-	205	152983113	hisH1	mma_2271	-	glutamine amidotransferase
2272	 46.25	-2	2544612..2545664	-	350	152983178	-	mma_2272	-	putative carbamoyl phosphate synthase large subunit
2273	 49.57	-1	2545686..2546855	-	389	152982956	-	mma_2273	-	C-methyltransferase
2274	 42.74	-2	2546884..2547585	-	233	152983179	-	mma_2274	-	hypothetical protein
2275	 46.18	-2	2547551..2548492	-	313	152983180	-	mma_2275	-	UDP-glucose 4-epimerase
2276	 46.70	-1	2548495..2549586	-	363	152982957	spsCA	mma_2276	-	spore coat biosynthesis protein
2277	 44.58	-2	2549583..2550560	-	325	152983181	-	mma_2277	-	UDP-glucose 4-epimerase
2278	 48.07	-1	2550557..2551513	-	318	152982958	-	mma_2278	-	hypothetical protein
2279	 46.20	-2	2551513..2552025	-	170	152982959	-	mma_2279	-	hypothetical protein
2280	 47.50	-1	2552022..2553143	-	373	152983114	wecE2	mma_2280	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
2281	 48.58	-1	2553329..2555479	-	716	152982960	-	mma_2281	-	oxidoreductase
2282	 45.51	-2	2555476..2556723	-	415	152980151	wecC	mma_2282	-	NDP-N-acetyl-d-galactosaminuronic acid dehydrogenase oxidoreductase
2283	 47.82	-1	2556720..2557844	-	374	152980084	wecB2	mma_2283	-	UDP-N-acetylglucosamine 2-epimerase
2284	 41.26	-2	2557837..2558202	-	121	152983281	-	mma_2284	-	MarR family transcriptional regulator
2285	 54.65	0	2558390..2559721	-	443	152980724	phoR	mma_2285	-	two-component system sensor kinase of the phosphate regulon
2286	 54.06	0	2559739..2560428	-	229	152980160	phoB	mma_2286	-	phosphate regulon two-component response regulator
2287	 53.16	0	2560435..2561145	-	236	152980557	phoU	mma_2287	-	phosphate uptake regulator
2288	 53.00	0	2561230..2562012	-	260	152980377	pstB	mma_2288	-	ABC-type phosphate transport system, ATPase component
2289	 53.89	0	2562032..2562892	-	286	152979809	pstA	mma_2289	-	ABC-type phosphate transport system, permease component
2290	 51.70	0	2562889..2563917	-	342	152980621	pstC	mma_2290	-	ABC-type phosphate transport system, permease component
2291	 51.44	0	2564031..2565074	-	347	152980536	pstS	mma_2291	-	ABC-type phosphate transport system substrate-binding protein
2292	 53.79	0	2565139..2567352	+	737	152979904	ppk	mma_2292	-	polyphosphate kinase
2293	 58.61	0	2567357..2567815	+	152	152981860	sixA	mma_2293	-	phosphohistidine phosphatase
2294	 55.96	0	2567821..2568231	-	136	152980849	-	mma_2294	-	hypothetical protein
2295	 52.05	0	2568293..2568634	-	113	152980848	phnA	mma_2295	-	alkylphosphonate uptake protein
2296	 61.39	+1	2568891..2570066	+	391	152982329	-	mma_2296	-	hypothetical protein
2297	 58.00	0	2570133..2571182	-	349	152980847	-	mma_2297	-	glycosysltransferase
2298	 54.59	0	2571164..2572024	-	286	152980846	-	mma_2298	-	hypothetical protein
2299	 55.73	0	2572021..2572788	-	255	152980845	-	mma_2299	-	hemolysin-like protein
2300	 49.29	-1	2572956..2573732	-	258	152982961	-	mma_2300	-	hypothetical protein
2301	 58.18	0	2573803..2574921	+	372	152981753	-	mma_2301	-	ABC-type branched-chain amino acid transport systems, periplasmic component
2302	 56.83	0	2574937..2575536	-	199	152980844	dedA2	mma_2302	-	dedA family protein
2303	 55.95	0	2575619..2577073	-	484	152980548	ppx	mma_2303	-	exopolyphosphatase
2304	 56.12	0	2577339..2578589	-	416	152980843	-	mma_2304	-	Hsp70/DnaK family protein
2305	 55.15	0	2578813..2579142	+	109	152980842	-	mma_2305	-	hypothetical protein
2306	 56.52	0	2579476..2580342	+	288	152980841	-	mma_2306	-	metallo-beta-lactamase superfamily protein
2307	 55.71	0	2580517..2582616	+	699	152980840	-	mma_2307	-	sensory box/GGDEF family protein
2308	 56.10	0	2582666..2583337	-	223	152979997	rpiA	mma_2308	-	ribose 5-phosphate isomerase A
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.