IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2135	 57.65	0	2405903..2406856	-	317	152980876	nlpD	mma_2135	-	lipoprotein nlpD precursor
2136	 56.31	0	2406897..2407775	-	292	152980875	pcm1	mma_2136	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
2137	 56.78	0	2407772..2408509	-	245	152979990	surE	mma_2137	-	acid phosphatase, stationary-phase survival protein
2138	 57.41	0	2408622..2410631	-	669	152979824	dinG	mma_2138	-	ATP-dependent DNA helicase
2139	 47.55	-1	2410722..2410925	-	67	152983264	-	mma_2139	-	hypothetical protein
2140	 55.51	0	2411182..2411988	+	268	152980874	-	mma_2140	-	Serine/threonine protein phosphatase
2141	 54.90	0	2412203..2415007	+	934	152980873	-	mma_2141	-	hypothetical protein
2142	 48.67	-1	2415099..2415398	-	99	152980872	elaB	mma_2142	-	hypothetical protein
2143	 52.76	0	2415484..2415936	-	150	152980871	-	mma_2143	-	hypothetical protein
2144	 56.53	0	2416537..2418666	+	709	152981462	-	mma_2144	-	signal transduction protein
2145	 54.03	0	2419103..2420653	-	516	152980069	leuA1	mma_2145	-	2-isopropylmalate synthase
2146	 56.98	0	2420715..2421602	-	295	152979906	pssA1	mma_2146	-	phosphatidylserine synthase
2147	 55.47	0	2421833..2422582	-	249	152980870	-	mma_2147	-	hypothetical protein
2148	 50.93	0	2422823..2423839	-	338	152980253	ilvC	mma_2148	-	ketol-acid reductoisomerase
2149	 50.81	0	2423878..2424369	-	163	152979813	ilvH	mma_2149	-	acetolactate synthase 3 regulatory subunit
2150	 52.34	0	2424369..2426120	-	583	152980052	ilvB	mma_2150	-	acetolactate synthase large subunit
2151	 51.58	0	2426637..2427206	+	189	152980869	rpoE5	mma_2151	-	ECF subfamily RNA polymerase sigma factor
2152	 54.17	0	2427203..2427610	+	135	152980868	-	mma_2152	-	hypothetical protein
2153	 54.43	0	2427613..2428323	+	236	152982361	-	mma_2153	-	hypothetical protein
2154	 55.82	0	2428345..2428842	+	165	152980867	-	mma_2154	-	hypothetical protein
2155	 51.61	0	2429043..2429633	+	196	152982322	-	mma_2155	-	hypothetical protein
2156	 53.27	0	2429722..2430318	+	198	152980866	-	mma_2156	-	hypothetical protein
2157	 56.36	0	2430331..2431572	-	413	152980865	metY	mma_2157	-	hypothetical protein
2158	 53.75	0	2431652..2433169	-	505	152979794	purF	mma_2158	-	amidophosphoribosyltransferase
2159	 53.58	0	2433227..2433715	-	162	152980863	cvpA	mma_2159	-	colicin V production transmembrane protein
2160	 58.07	0	2433757..2434605	-	282	152980864	dedD	mma_2160	-	sporulation related protein
2161	 56.27	0	2434626..2435924	-	432	152980862	folC	mma_2161	-	bifunctional folylpolyglutamate synthase / dihydrofolate synthase
2162	 54.07	0	2436022..2436894	-	290	152980197	accD	mma_2162	-	acetyl-CoA carboxylase subunit beta
2163	 57.52	0	2437001..2437798	-	265	152980192	trpA	mma_2163	-	tryptophan synthase alpha chain
2164	 55.58	0	2437896..2439167	-	423	152979872	trpB	mma_2164	-	tryptophan synthase subunit beta
2165	 57.64	0	2439182..2439868	-	228	152980562	trpF	mma_2165	-	phosphoribosylanthranilate isomerase
2166	 56.37	0	2439927..2440742	-	271	152980861	truA	mma_2166	-	tRNA pseudouridine synthase A
2167	 57.67	0	2440830..2443664	-	944	152980860	fimV	mma_2167	-	FimV type IV pilus assembly protein
2168	 56.19	0	2443886..2444992	-	368	152980183	asd	mma_2168	-	aspartate-semialdehyde dehydrogenase
2169	 54.62	0	2445080..2446150	-	356	152979812	leuB	mma_2169	-	3-isopropylmalate dehydrogenase
2170	 52.01	0	2446181..2446828	-	215	152980134	leuD1	mma_2170	-	3-isopropylmalate dehydratase small subunit
2171	 52.85	0	2446936..2447058	-	40	152983265	ecnA	mma_2171	-	entericidin A anti-toxin precursor
2172	 58.35	0	2447066..2448472	-	468	152980460	leuC1	mma_2172	-	3-isopropylmalate dehydratase large subunit
2173	 58.12	0	2448644..2449462	-	272	152981845	-	mma_2173	-	hypothetical protein
2174	 58.11	0	2449528..2450625	-	365	152979893	aroC	mma_2174	-	chorismate synthase
2175	 54.38	0	2450769..2453006	+	745	152981002	-	mma_2175	-	signal transduction protein
2176	 55.64	0	2453028..2454923	-	631	152980859	aas	mma_2176	-	2-acylglycerophosphoethanolamine acyltransferase
2177	 50.47	-1	2455073..2455603	-	176	152980858	-	mma_2177	-	hypothetical protein
2178	 51.26	0	2455741..2456058	+	105	152980857	-	mma_2178	-	hypothetical protein
2179	 57.57	0	2456011..2457318	-	435	152980856	rbn	mma_2179	-	ribonuclease BN transmembrane protein
2180	 61.74	+1	2457427..2458035	+	202	152980855	wrbA	mma_2180	-	trp repressor binding protein
2181	 56.74	0	2458035..2458427	+	130	152982944	-	mma_2181	-	hypothetical protein
2182	 56.57	0	2458427..2459833	+	468	152980854	glcD3	mma_2182	-	FAD/FMN-containing dehydrogenase
2183	 49.76	-1	2459904..2460323	+	139	152983266	-	mma_2183	-	hypothetical protein
2184	 54.44	0	2461145..2462584	+	479	152980273	katE	mma_2184	-	catalase
2185	 51.63	0	2462626..2463423	-	265	152980853	-	mma_2185	-	FAA-hydrolase family protein
2186	 53.02	0	2463709..2464023	-	104	152982841	-	mma_2186	-	hypothetical protein
2187	 52.80	0	2464838..2465320	-	160	152983415	-	mma_2187	-	hypothetical protein
2188	 47.39	-1	2465292..2465732	-	146	152983110	-	mma_2188	-	hypothetical protein
2189	 48.51	-1	2465788..2466426	+	212	152983267	-	mma_2189	-	hypothetical protein
2190	 52.28	0	2466488..2466925	-	145	152983414	-	mma_2190	-	hypothetical protein
2191	 44.95	-2	2467173..2467499	-	108	152983413	-	mma_2191	-	hypothetical protein
2192	 47.37	-1	2467502..2469268	-	588	152983189	-	mma_2192	-	hypothetical protein
2193	 53.72	0	2469447..2471006	-	519	152983190	-	mma_2193	-	hypothetical protein
2194	 51.51	0	2471006..2472364	-	452	152982945	-	mma_2194	-	hypothetical protein
2195	 43.46	-2	2472603..2473214	-	203	152983268	-	mma_2195	-	hypothetical protein
2196	 52.51	0	2473214..2474131	-	305	152982946	-	mma_2196	-	hypothetical protein
2197	 49.88	-1	2474128..2474532	-	134	152983269	-	mma_2197	-	hypothetical protein
2198	 51.67	0	2474532..2476091	-	519	152982947	-	mma_2198	-	hypothetical protein
2199	 49.43	-1	2476091..2476792	-	233	152983270	-	mma_2199	-	hypothetical protein
2200	 53.59	0	2476814..2477425	-	203	152982457	-	mma_2200	-	hypothetical protein
2201	 56.07	0	2477530..2478246	-	238	152982269	-	mma_2201	-	hypothetical protein
2202	 51.61	0	2478256..2479251	-	331	152982665	-	mma_2202	-	hypothetical protein
2203	 54.17	0	2479271..2480326	-	351	152982948	-	mma_2203	-	hypothetical protein
2204	 52.27	0	2480614..2481009	-	131	152982611	-	mma_2204	-	hypothetical protein
2205	 53.11	0	2481155..2483212	-	685	152982725	-	mma_2205	-	hypothetical protein
2206	 51.95	0	2483663..2484973	-	436	152982949	-	mma_2206	-	hypothetical protein
2207	 53.45	0	2486037..2486369	-	110	152982950	-	mma_2207	-	hypothetical protein
2208	 50.68	0	2487532..2488044	-	170	152983412	-	mma_2208	-	hypothetical protein
2209	 50.13	-1	2488007..2488804	-	265	152983271	-	mma_2209	-	hypothetical protein
2210	 49.75	-1	2488804..2489400	-	198	152983411	-	mma_2210	-	hypothetical protein
2211	 53.01	0	2489385..2489999	-	204	152982706	-	mma_2211	-	hypothetical protein
2212	 47.08	-1	2489996..2490577	-	193	152983273	-	mma_2212	-	hypothetical protein
2213	 49.33	-1	2490570..2490944	-	124	152983272	-	mma_2213	-	hypothetical protein
2214	 49.83	-1	2490941..2491237	-	98	152982433	-	mma_2214	-	hypothetical protein
2215	 48.40	-1	2491257..2491694	-	145	152983274	-	mma_2215	-	phage N-6-adenine methyltransferase
2216	 52.86	0	2491691..2492110	-	139	152982951	-	mma_2216	-	hypothetical protein
2217	 53.60	0	2492107..2492703	-	198	152982952	-	mma_2217	-	hypothetical protein
2218	 52.24	0	2492796..2492996	-	66	152983275	-	mma_2218	-	phage regulatory protein
2219	 49.18	-1	2493077..2493505	+	142	152983410	-	mma_2219	-	hypothetical protein
2220	 46.06	-2	2493856..2494287	+	143	152983276	-	mma_2220	-	hypothetical protein
2221	 49.36	-1	2494287..2494754	+	155	152983111	-	mma_2221	-	hypothetical protein
2222	 48.46	-1	2495049..2495372	+	107	152982212	-	mma_2222	-	hypothetical protein
2223	 52.62	0	2495398..2495760	+	120	152983409	-	mma_2223	-	hypothetical protein
2224	 59.43	+1	2496016..2496747	+	243	152980852	-	mma_2224	-	pentapeptide repeat-containing protein
2225	 43.59	-2	2496974..2497207	+	77	152983277	-	mma_2225	-	hypothetical protein
2226	 51.35	0	2497312..2497866	+	184	152982953	-	mma_2226	-	hypothetical protein
2227	 52.65	0	2497863..2498240	+	125	152982954	ssb1	mma_2227	-	single-strand DNA-binding protein
2228	 51.78	0	2498243..2498692	+	149	152983279	-	mma_2228	-	hypothetical protein
2229	 54.60	0	2499219..2500088	+	289	152983408	-	mma_2229	-	hypothetical protein
2230	 45.90	-2	2500085..2500474	+	129	152983407	-	mma_2230	-	hypothetical protein
2231	 52.53	0	2500443..2500817	+	124	152983406	-	mma_2231	-	hypothetical protein
2232	 47.44	-1	2500999..2501487	+	162	152983405	-	mma_2232	-	hypothetical protein
2233	 52.77	0	2501960..2502988	+	342	152983278	int	mma_2233	-	phage-related integrase
2234	 53.88	0	2503252..2503509	-	85	152983280	-	mma_2234	-	hypothetical protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.