IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2074	 55.62	0	2343674..2345647	+	657	152981021	-	mma_2074	-	ABC transporter ATPase
2075	 57.07	0	2345667..2346500	+	277	152981809	-	mma_2075	-	hypothetical protein
2076	 54.19	0	2346524..2347180	-	218	152981645	-	mma_2076	-	hypothetical protein
2077	 46.60	-1	2347637..2347960	-	107	152983419	-	mma_2077	-	hypothetical protein
2078	 43.75	-2	2348132..2348467	-	111	152983418	-	mma_2078	-	hypothetical protein
2079	 44.06	-2	2348927..2349448	-	173	152983417	-	mma_2079	-	hypothetical protein
2080	 40.25	-2	2349460..2349777	-	105	152983416	-	mma_2080	-	hypothetical protein
2081	 57.69	0	2350160..2350939	-	259	152980650	motB1	mma_2081	-	flagellar motor protein MotD
2082	 56.01	0	2350968..2351708	-	246	152980181	motA1	mma_2082	-	MotA chemotaxis protein
2083	 53.01	0	2351690..2352421	-	243	152980386	fliA	mma_2083	-	RNA polymerase sigma factor for flagellar operon
2084	 59.57	+1	2352429..2353133	-	234	152980387	fleN	mma_2084	-	FleN flagellar synthesis regulator
2085	 56.79	0	2353237..2354502	-	421	152980692	flhF	mma_2085	-	flagellar biosynthesis regulator FlhF
2086	 58.18	0	2354499..2356583	-	694	152979994	flhA	mma_2086	-	FlhA flagellar biosynthesis protein
2087	 57.15	0	2356580..2357788	-	402	152980271	flhB	mma_2087	-	FlhB flagellar biosynthetic protein
2088	 57.07	0	2357906..2359093	-	395	152980233	-	mma_2088	-	signal transduction protein
2089	 57.63	0	2359173..2359880	-	235	152980356	cheZ2	mma_2089	-	chemotaxis regulator CheZ
2090	 51.63	0	2359831..2360229	-	132	152980357	cheY2	mma_2090	-	CheY chemotaxis protein
2091	 55.19	0	2360381..2361460	-	359	152980521	cheB2	mma_2091	-	chemotaxis-specific methylesterase
2092	 53.92	0	2361512..2362123	-	203	152979864	cheD2	mma_2092	-	chemoreceptor glutamine deamidase CheD
2093	 55.18	0	2362130..2363008	-	292	152979933	cheR1	mma_2093	-	CheR chemotaxis protein methyltransferase
2094	 51.22	0	2363132..2363623	-	163	152980520	cheW4	mma_2094	-	CheW purine-binding chemotaxis protein
2095	 53.72	0	2363638..2365776	-	712	152980691	cheA3	mma_2095	-	CheA chemotaxis protein
2096	 49.45	-1	2365829..2366194	-	121	152982726	cheY3	mma_2096	-	chemotaxis protein CheY
2097	 54.88	0	2366258..2366800	-	180	152982579	-	mma_2097	-	hypothetical protein
2098	 54.00	0	2366841..2367827	-	328	152980289	motB2	mma_2098	-	flagellar motor protein MotB
2099	 50.41	-1	2367876..2368736	-	286	152980324	motA2	mma_2099	-	flagellar motor protein MotA
2100	 58.05	0	2368949..2369749	-	266	152982532	-	mma_2100	-	hypothetical protein
2101	 50.73	0	2369782..2370327	-	181	152982540	flhC	mma_2101	-	transcriptional activator FlhC
2102	 51.89	0	2370379..2370696	-	105	152982836	flhD	mma_2102	-	transcriptional activator FlhD
2103	 50.00	-1	2371742..2372371	-	209	152982755	-	mma_2103	-	hypothetical protein
2104	 53.19	0	2372549..2373802	-	417	152980089	lysC	mma_2104	-	aspartate kinase
2105	 55.51	0	2373938..2375326	-	462	152980618	mesJ1	mma_2105	-	MesJ cell cycle protein
2106	 53.23	0	2375354..2376328	-	324	152980630	accA	mma_2106	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2107	 52.78	0	2376374..2377021	-	215	152980259	alkA	mma_2107	-	DNA-3-methyladenine glycosylase II
2108	 54.77	0	2377026..2378420	-	464	152980026	cysS	mma_2108	-	cysteinyl-tRNA synthetase
2109	 51.64	0	2378875..2379453	+	192	152981407	ppiB1	mma_2109	-	peptidyl-prolyl cis-trans isomerase B
2110	 53.58	0	2379516..2380004	+	162	152981419	ppiB2	mma_2110	-	peptidyl-prolyl cis-trans isomerase B
2111	 54.32	0	2380044..2380853	+	269	152979937	lpxH	mma_2111	-	UDP-2,3-diacylglucosamine hydrolase
2112	 56.37	0	2380877..2381575	-	232	152981537	-	mma_2112	-	hypothetical protein
2113	 56.59	0	2381586..2382329	-	247	152980684	cysE2	mma_2113	-	serine O-acetyltransferase
2114	 59.54	+1	2382441..2383184	-	247	152981297	yjfH	mma_2114	-	RNA methyltransferase
2115	 54.96	0	2383187..2385637	-	816	152981195	rnr	mma_2115	-	exoribonuclease RNAse R
2116	 53.07	0	2386037..2386573	-	178	152981816	-	mma_2116	-	nucleotide phosphoribosyltransferase
2117	 54.79	0	2386601..2387914	-	437	152980326	purA1	mma_2117	-	adenylosuccinate synthetase
2118	 56.42	0	2387918..2389069	-	383	152980114	hisZ	mma_2118	-	ATP phosphoribosyltransferase regulatory subunit
2119	 49.83	-1	2389289..2390179	-	296	152980523	hflC2	mma_2119	-	inner membrane-anchored protein
2120	 53.49	0	2390179..2391453	-	424	152981571	hflK	mma_2120	-	membrane protease subunit HflK
2121	 53.53	0	2391536..2392654	-	372	152980964	hflX	mma_2121	-	HflX GTP-binding protein
2122	 45.99	-2	2392690..2392926	-	78	152983171	hfq	mma_2122	-	Hfq protein
2123	 54.39	0	2393034..2394377	-	447	152981185	engA	mma_2123	-	GTP-binding protein EngA
2124	 56.64	0	2394386..2395552	-	388	152981826	-	mma_2124	-	pyrrolo-quinoline quinone
2125	 52.69	0	2395571..2396221	-	216	152980881	-	mma_2125	-	hypothetical protein
2126	 53.63	0	2396234..2397583	-	449	152980083	hisS	mma_2126	-	histidyl-tRNA synthetase
2127	 55.35	0	2397635..2398906	-	423	152980073	ispG	mma_2127	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2128	 58.72	0	2398914..2399945	-	343	152980880	-	mma_2128	-	hypothetical protein
2129	 53.81	0	2399938..2400738	-	266	152980597	pilF	mma_2129	-	PilF type IV pilus assembly protein
2130	 54.73	0	2400735..2401898	-	387	152980879	yfgB	mma_2130	-	hypothetical protein
2131	 48.59	-1	2401962..2402387	-	141	152980307	ndk	mma_2131	-	nucleoside-diphosphate kinase
2132	 52.81	0	2402597..2403289	+	230	152980878	yccA	mma_2132	-	hypothetical protein
2133	 54.22	0	2403355..2404728	-	457	152980877	ygcA	mma_2133	-	23S rRNA 5-methyluridine methyltransferase
2134	 56.07	0	2404859..2405896	-	345	152980760	rpoS	mma_2134	-	RNA polymerase sigma factor RpoS
2135	 57.65	0	2405903..2406856	-	317	152980876	nlpD	mma_2135	-	lipoprotein nlpD precursor
2136	 56.31	0	2406897..2407775	-	292	152980875	pcm1	mma_2136	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
2137	 56.78	0	2407772..2408509	-	245	152979990	surE	mma_2137	-	acid phosphatase, stationary-phase survival protein
2138	 57.41	0	2408622..2410631	-	669	152979824	dinG	mma_2138	-	ATP-dependent DNA helicase
2139	 47.55	-1	2410722..2410925	-	67	152983264	-	mma_2139	-	hypothetical protein
2140	 55.51	0	2411182..2411988	+	268	152980874	-	mma_2140	-	Serine/threonine protein phosphatase
2141	 54.90	0	2412203..2415007	+	934	152980873	-	mma_2141	-	hypothetical protein
2142	 48.67	-1	2415099..2415398	-	99	152980872	elaB	mma_2142	-	hypothetical protein
2143	 52.76	0	2415484..2415936	-	150	152980871	-	mma_2143	-	hypothetical protein
2144	 56.53	0	2416537..2418666	+	709	152981462	-	mma_2144	-	signal transduction protein
2145	 54.03	0	2419103..2420653	-	516	152980069	leuA1	mma_2145	-	2-isopropylmalate synthase
2146	 56.98	0	2420715..2421602	-	295	152979906	pssA1	mma_2146	-	phosphatidylserine synthase
2147	 55.47	0	2421833..2422582	-	249	152980870	-	mma_2147	-	hypothetical protein
2148	 50.93	0	2422823..2423839	-	338	152980253	ilvC	mma_2148	-	ketol-acid reductoisomerase
2149	 50.81	0	2423878..2424369	-	163	152979813	ilvH	mma_2149	-	acetolactate synthase 3 regulatory subunit
2150	 52.34	0	2424369..2426120	-	583	152980052	ilvB	mma_2150	-	acetolactate synthase large subunit
2151	 51.58	0	2426637..2427206	+	189	152980869	rpoE5	mma_2151	-	ECF subfamily RNA polymerase sigma factor
2152	 54.17	0	2427203..2427610	+	135	152980868	-	mma_2152	-	hypothetical protein
2153	 54.43	0	2427613..2428323	+	236	152982361	-	mma_2153	-	hypothetical protein
2154	 55.82	0	2428345..2428842	+	165	152980867	-	mma_2154	-	hypothetical protein
2155	 51.61	0	2429043..2429633	+	196	152982322	-	mma_2155	-	hypothetical protein
2156	 53.27	0	2429722..2430318	+	198	152980866	-	mma_2156	-	hypothetical protein
2157	 56.36	0	2430331..2431572	-	413	152980865	metY	mma_2157	-	hypothetical protein
2158	 53.75	0	2431652..2433169	-	505	152979794	purF	mma_2158	-	amidophosphoribosyltransferase
2159	 53.58	0	2433227..2433715	-	162	152980863	cvpA	mma_2159	-	colicin V production transmembrane protein
2160	 58.07	0	2433757..2434605	-	282	152980864	dedD	mma_2160	-	sporulation related protein
2161	 56.27	0	2434626..2435924	-	432	152980862	folC	mma_2161	-	bifunctional folylpolyglutamate synthase / dihydrofolate synthase
2162	 54.07	0	2436022..2436894	-	290	152980197	accD	mma_2162	-	acetyl-CoA carboxylase subunit beta
2163	 57.52	0	2437001..2437798	-	265	152980192	trpA	mma_2163	-	tryptophan synthase alpha chain
2164	 55.58	0	2437896..2439167	-	423	152979872	trpB	mma_2164	-	tryptophan synthase subunit beta
2165	 57.64	0	2439182..2439868	-	228	152980562	trpF	mma_2165	-	phosphoribosylanthranilate isomerase
2166	 56.37	0	2439927..2440742	-	271	152980861	truA	mma_2166	-	tRNA pseudouridine synthase A
2167	 57.67	0	2440830..2443664	-	944	152980860	fimV	mma_2167	-	FimV type IV pilus assembly protein
2168	 56.19	0	2443886..2444992	-	368	152980183	asd	mma_2168	-	aspartate-semialdehyde dehydrogenase
2169	 54.62	0	2445080..2446150	-	356	152979812	leuB	mma_2169	-	3-isopropylmalate dehydrogenase
2170	 52.01	0	2446181..2446828	-	215	152980134	leuD1	mma_2170	-	3-isopropylmalate dehydratase small subunit
2171	 52.85	0	2446936..2447058	-	40	152983265	ecnA	mma_2171	-	entericidin A anti-toxin precursor
2172	 58.35	0	2447066..2448472	-	468	152980460	leuC1	mma_2172	-	3-isopropylmalate dehydratase large subunit
2173	 58.12	0	2448644..2449462	-	272	152981845	-	mma_2173	-	hypothetical protein
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.