IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
160	 53.48	0	173200..173745	-	181	152982770	-	mma_0160	-	hypothetical protein
161	 55.77	0	173851..175557	-	568	152980904	tar5	mma_0161	-	methyl-accepting chemotaxis transducer transmembrane protein
162	 52.16	0	175907..176692	+	261	152981478	-	mma_0162	-	5'-3' exonuclease
163	 51.79	0	176938..177273	+	111	152982892	-	mma_0163	-	hypothetical protein
164	 60.04	+1	177492..179015	-	507	152981227	-	mma_0164	-	Mg(2+) chelatase family protein
165	 54.91	0	179034..179501	-	155	152981748	tdcF1	mma_0165	-	translation initiation inhibitor
166	 51.91	0	179552..179944	-	130	152982418	-	mma_0166	-	hypothetical protein
167	 48.75	-1	180065..180304	-	79	152983195	-	mma_0167	-	hypothetical protein
168	 47.23	-1	180536..181276	+	246	152982722	-	mma_0168	-	hypothetical protein
169	 49.85	-1	181303..181641	+	112	152981568	glnK1	mma_0169	-	nitrogen regulatory protein PII
170	 56.48	0	181652..183055	+	467	152981218	amtB1	mma_0170	-	ammonium transporter
171	 55.66	0	183283..184581	+	432	152980006	gshA1	mma_0171	-	glutamate--cysteine ligase
172	 53.71	0	184727..185683	+	318	152980683	gshB	mma_0172	-	glutathione synthase
173	 56.86	0	185747..186154	+	135	152981958	-	mma_0173	-	IIA component of sugar transport PTS system
174	 50.37	-1	186179..186448	+	89	152983159	ptsH	mma_0174	-	sugar transport PTS system phosphocarrier protein HPr
175	 54.83	0	186544..188292	+	582	152981209	ptsI	mma_0175	-	phosphoenolpyruvate-protein phosphotransferase
176	 54.90	0	188328..188888	-	186	152981928	-	mma_0176	-	ChrA half sized-like protein
177	 60.41	+1	188909..189499	-	196	152981908	-	mma_0177	-	ChrA half sized-like protein
178	 54.42	0	189843..190814	-	323	152982352	-	mma_0178	-	glycosyltransferase, group I
179	 53.24	0	190814..192109	-	431	152982229	-	mma_0179	-	hypothetical protein
180	 55.09	0	192122..192976	-	284	152982312	lgtF	mma_0180	-	UDP-glucose--lipooligosaccharide glucosyltransferase
181	 54.32	0	193438..194595	+	385	152980347	metX	mma_0181	-	homoserine O-acetyltransferase
182	 55.61	0	194592..195197	+	201	152982553	-	mma_0182	-	hypothetical protein
183	 59.91	+1	195201..196547	-	448	152982867	ampG	mma_0184	-	AmpG permease
184	 56.35	0	196499..197341	+	280	152981733	-	mma_0183	-	SAM-dependent methyltransferase
185	 58.99	+1	197364..198431	+	355	152982500	-	mma_0185	-	hypothetical protein
186	 57.18	0	198450..199619	+	389	152982676	sulP2	mma_0186	-	sulfate permease
187	 53.56	0	199736..200902	+	388	152981793	-	mma_0187	-	hypothetical protein
188	 59.34	+1	200926..202098	-	390	152982704	-	mma_0188	-	major facilitator transporter
189	 54.28	0	202499..204451	-	650	152982051	phoX	mma_0189	-	alkaline phosphatase
190	 54.10	0	204589..205368	-	259	152979786	xthA1	mma_0190	-	exodeoxyribonuclease III
191	 55.86	0	205566..206231	+	221	152979785	pyrE	mma_0191	-	orotate phosphoribosyltransferase
192	 52.48	0	206256..206861	+	201	152982176	-	mma_0192	-	hypothetical protein
193	 55.65	0	206929..208389	-	486	152979910	gatB	mma_0193	-	glutamyl-tRNA (Gln) amidotransferase subunit B
194	 56.58	0	208461..209918	-	485	152980171	gatA1	mma_0194	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
195	 58.09	0	209991..210293	-	100	152980596	gatC	mma_0195	-	glutamyl-tRNA (Gln) amidotransferase subunit C
196	 55.56	0	210543..211586	+	347	152980467	mreB	mma_0196	-	rod shape-determining protein MreB
197	 57.20	0	211741..212733	+	330	152980391	mreC	mma_0197	-	MreC rod shape-determining protein
198	 58.33	0	212730..213245	+	171	152980193	mreD	mma_0198	-	MreD rod shape-determining protein
199	 53.71	0	213284..215197	+	637	152981159	mrdA	mma_0199	-	penicillin-binding protein 2
200	 54.57	0	215194..216309	+	371	152981236	rodA	mma_0200	-	rod shape-determining protein RodA
201	 57.48	0	216374..217396	+	340	152980505	rlpA	mma_0201	-	rare lipoprotein A
202	 55.41	0	217393..218316	-	307	152981090	-	mma_0202	-	hypothetical protein
203	 58.08	0	218329..219609	+	426	152980918	-	mma_0203	-	hypothetical protein
204	 54.84	0	219618..219989	+	123	152981800	-	mma_0204	-	hypothetical protein
205	 51.76	0	220044..220640	+	198	152980295	gmhA	mma_0205	-	phosphoheptose isomerase
206	 53.76	0	220633..221283	+	216	152981723	-	mma_0206	-	hypothetical protein
207	 56.46	0	221368..222885	+	505	152981100	betT	mma_0207	-	high-affinity choline transport protein
208	 50.37	-1	222902..223576	+	224	152980916	lemA1	mma_0208	-	LemA family protein
209	 56.52	0	223642..225621	+	659	152982799	-	mma_0209	-	Zn-dependent protease with chaperone function
210	 51.50	0	225711..226244	+	177	152982120	-	mma_0210	-	hypothetical protein
211	 59.79	+1	226245..227087	-	280	152980147	hemK1	mma_0211	-	methylase of polypeptide chain release factors
212	 58.02	0	227087..227560	-	157	152980687	dsbB	mma_0212	-	disulfide bond formation protein
213	 56.14	0	227629..228711	-	360	152980137	prfA	mma_0213	-	RF-1 peptide chain release factor
214	 58.29	0	228818..230107	-	429	152980314	hemA	mma_0214	-	glutamyl-tRNA reductase
215	 55.30	0	230190..232556	-	788	152981455	-	mma_0215	-	two-component sensor histidine kinase
216	 57.09	0	232573..234003	-	476	152981756	-	mma_0216	-	peptidoglycan binding protein
217	 54.35	0	234036..234725	-	229	152981417	ompR1	mma_0217	-	two-components system response regulator
218	 51.43	0	235429..235743	-	104	152982259	psiF	mma_0218	-	phosphate starvation-inducible protein precursor
219	 56.61	0	235896..236402	-	168	152981929	-	mma_0219	-	hypothetical protein
220	 56.46	0	236492..237343	-	283	152981279	-	mma_0220	-	carboxylesterase
221	 54.65	0	237363..238469	-	368	152980628	adhC	mma_0221	-	Zn-dependent alcohol dehydrogenases, class III
222	 55.20	0	238695..239732	+	345	152981032	-	mma_0222	-	AraC family transcriptional regulator
223	 55.41	0	239755..240465	-	236	152982557	-	mma_0223	-	GntR family transcriptional regulator
224	 54.01	0	240612..241709	+	365	152981998	-	mma_0224	-	hypothetical protein
225	 53.26	0	241751..242824	+	357	152982409	-	mma_0225	-	hypothetical protein
226	 54.30	0	242953..244302	+	449	152981196	pbuX1	mma_0226	-	xanthine permease
227	 58.80	0	244330..245295	+	321	152981483	-	mma_0227	-	vanB family oxidoreductase/oxygenase,
228	 55.12	0	245456..246382	+	308	152982134	-	mma_0228	-	hypothetical protein
229	 57.60	0	246928..248118	+	396	152981326	-	mma_0229	-	monooxygenase family protein
230	 52.84	0	248160..248882	+	240	152980742	dsbC	mma_0230	-	thiol:disulfide interchange protein DsbC
231	 54.17	0	249064..250863	+	599	152980999	-	mma_0231	-	peptidase M61
232	 54.81	0	250912..251712	-	266	152980361	trpC	mma_0232	-	indole-3-glycerol-phosphate synthase
233	 57.29	0	251745..252779	-	344	152980254	trpD1	mma_0233	-	anthranilate phosphoribosyltransferase
234	 55.85	0	252823..253386	-	187	152980185	trpG	mma_0234	-	anthranilate synthase component II
235	 56.05	0	253387..254883	-	498	152980327	trpE	mma_0235	-	anthranilate synthase component I
236	 55.36	0	255067..255738	-	223	152981574	gph1	mma_0236	-	phosphoglycolate phosphatase
237	 55.86	0	255765..256430	-	221	152980493	rpe	mma_0237	-	D-ribulose-5-phosphate 3-epimerase
238	 53.60	0	256604..256978	+	124	152981494	apaG	mma_0238	-	ApaG
239	 57.51	0	257142..258320	+	392	152979795	-	mma_0239	-	membrane-bound transglycolase
240	 52.51	0	258376..259152	+	258	152980360	paaG1	mma_0240	-	enoyl-CoA hydratase
241	 40.87	-2	265771..267057	+	428	152983144	-	mma_0241	-	hypothetical protein
242	 54.47	0	267954..268658	+	234	152981717	terC3	mma_0242	-	integral membrane protein TerC
243	 50.40	-1	268711..269214	+	167	152982068	usp1	mma_0243	-	universal stress protein (Usp)
244	 55.02	0	269776..270393	+	205	152982085	-	mma_0244	-	TonB-like protein
245	 57.38	0	270462..271301	+	279	152981708	exbB1	mma_0245	-	biopolymer transport protein ExbB
246	 53.15	0	271305..271733	+	142	152981777	exbD1	mma_0246	-	biopolymer transport protein ExbD
247	 53.94	0	271754..272185	+	143	152981856	exbD2	mma_0247	-	biopolymer transport protein ExbD
248	 55.56	0	272221..272697	+	158	152981431	-	mma_0248	-	GAF domain-containing protein
249	 56.02	0	272838..273851	+	337	152981199	-	mma_0249	-	hypothetical protein
250	 54.59	0	274239..275588	+	449	152981477	-	mma_0250	-	DszA family monooxygenase
251	 53.81	0	275634..276947	+	437	152981572	-	mma_0251	-	acyl-CoA dehydrogenase family protein
252	 56.61	0	277014..278027	+	337	152981244	-	mma_0252	-	hypothetical protein
253	 56.50	0	278145..280121	+	658	152982656	-	mma_0253	-	ABC-type multidrug transport system, ATPase and permease components
254	 53.56	0	280118..281956	+	612	152981121	-	mma_0254	-	ABC-type multidrug transport system, ATPase and permease components
255	 57.99	0	282055..283218	-	387	152982511	-	mma_0255	-	hypothetical protein
256	 53.88	0	283219..284133	-	304	152980971	sseA1	mma_0256	-	thiosulfate sulfurtransferase
257	 54.10	0	284268..285182	-	304	152981629	-	mma_0257	-	cys regulon transcriptional activator
258	 57.58	0	285812..287197	+	461	152981514	-	mma_0258	-	nitrilotriacetate monooxygenase component A
259	 57.35	0	287271..288182	+	303	152981314	-	mma_0259	-	ABC-type transport systems, permease component
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.