IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1712	 44.88	-2	1936875..1937870	+	331	152983436	-	mma_1712	-	hypothetical protein
1713	 44.80	-2	1938097..1939404	+	435	152983435	-	mma_1713	-	hypothetical protein
1714	 49.87	-1	1939523..1941892	+	789	152982931	-	mma_1714	-	cation-translocating P-type ATPase
1715	 48.12	-1	1942161..1942505	-	114	152983249	-	mma_1715	-	hypothetical protein
1716	 53.81	0	1942738..1943118	+	126	152983434	-	mma_1716	-	hypothetical protein
1717	 50.84	0	1943190..1944497	+	435	152982932	silC2	mma_1717	-	outer membrane cation efflux protein
1718	 51.41	0	1944494..1945987	+	497	152982933	silB	mma_1718	-	cation efflux system transmembrane protein
1719	 51.76	0	1945984..1949136	+	1050	152981114	silA	mma_1719	-	silver efflux pump
1720	 42.74	-2	1949154..1949525	+	123	152983084	-	mma_1720	-	hypothetical protein
1721	 46.11	-2	1949616..1950992	-	458	152983085	copS2	mma_1721	-	sensor kinase of copper sensing two-component system
1722	 48.34	-1	1950992..1951684	-	230	152983086	copR2	mma_1722	-	response regulator of copper sensing system
1723	 51.55	0	1951802..1953733	+	643	152982934	copA2	mma_1723	-	copper resistance protein A
1724	 52.60	0	1953763..1954743	+	326	152983087	copB2	mma_1724	-	copper resistance protein B
1725	 49.47	-1	1954781..1955158	+	125	152983088	copC2	mma_1725	-	copper resistance signal peptide protein C
1726	 46.36	-2	1955166..1956086	+	306	152983089	copD2	mma_1726	-	copper resistance protein D
1727	 40.34	-2	1956232..1956588	+	118	152983250	-	mma_1727	-	hypothetical protein
1728	 44.92	-2	1956802..1957845	+	347	152983090	gtrB1	mma_1728	-	glucosyl transferase
1729	 45.74	-2	1957842..1958228	+	128	152983433	-	mma_1729	-	hypothetical protein
1730	 56.05	0	1958319..1959608	+	429	152982935	-	mma_1730	-	outer membrane efflux protein
1731	 54.24	0	1959605..1960795	+	396	152983091	czcB3	mma_1731	-	cobalt-zinc-cadmium resistance protein CzcB
1732	 52.24	0	1960798..1964034	+	1078	152982936	czcA3	mma_1732	-	cation efflux system protein
1733	 47.58	-1	1964171..1965223	+	350	152983092	cnrT	mma_1733	-	transporter of the DMT superfamily
1734	 42.54	-2	1965631..1965858	-	75	152983251	-	mma_1734	-	hypothetical protein
1735	 49.50	-1	1965881..1966882	-	333	152983093	-	mma_1735	-	cointegrate resolution protein T
1736	 49.09	-1	1967075..1968007	+	310	152983094	-	mma_1736	-	cointegrate resolution protein S
1737	 43.95	-2	1968016..1968693	-	225	152983432	-	mma_1737	-	hypothetical protein
1738	 49.74	-1	1969840..1970997	+	385	152983095	-	mma_1738	-	hypothetical protein
1739	 50.54	-1	1970963..1973293	+	776	152982937	-	mma_1739	-	hypothetical protein
1740	 44.62	-2	1973445..1974011	+	188	152983431	-	mma_1740	-	hypothetical protein
1741	 46.89	-1	1974008..1974826	+	272	152983252	-	mma_1741	-	hypothetical protein
1742	 43.94	-2	1975538..1976131	-	197	152983430	-	mma_1742	-	hypothetical protein
1743	 43.94	-2	1976511..1976840	+	109	152983429	-	mma_1743	-	hypothetical protein
1744	 40.42	-2	1976930..1977409	+	159	152983428	-	mma_1744	-	hypothetical protein
1745	 55.57	0	1977666..1980638	-	990	152981469	-	mma_1745	-	transposase
1746	 60.66	+1	1980938..1981270	-	110	152982313	-	mma_1746	-	hypothetical protein
1747	 62.03	+1	1981383..1981619	-	78	152982715	-	mma_1747	-	putative mercury resistance protein
1748	 66.94	+2	1981616..1981981	-	121	152983096	merD	mma_1748	-	transcriptional regulator MerD
1749	 64.35	+2	1981999..1983684	-	561	152981182	merA	mma_1749	-	putative mercuric reductase
1750	 61.97	+1	1983723..1984148	-	141	152982270	merC	mma_1750	-	putative mercury transport protein MerC
1751	 60.87	+1	1984176..1984451	-	91	152982938	merP	mma_1751	-	mercuric transport periplasmic binding protein
1752	 62.39	+1	1984465..1984815	-	116	152982220	merT	mma_1752	-	putative mercuric transport protein
1753	 59.70	+1	1984980..1985639	-	219	152983427	merB	mma_1753	-	organomercurial lyase
1754	 59.54	+1	1985732..1986166	+	144	152981934	merR	mma_1754	-	putative transcriptional regulator MerR
1755	 53.06	0	1986555..1987061	-	168	152983426	-	mma_1755	-	hypothetical protein
1756	 50.00	-1	1987390..1987749	-	119	152983425	-	mma_1756	-	hypothetical protein
1757	 57.23	0	1987619..1988593	-	324	152983253	-	mma_1757	-	cointegrate resolution protein S
1758	 59.52	+1	1988793..1989827	+	344	152982218	-	mma_1758	-	cointegrate resolution protein T
1759	 48.11	-1	1989977..1990795	+	272	152983097	-	mma_1759	-	cointegrate resolution protein T
1760	 45.53	-2	1990797..1991411	-	204	152983098	-	mma_1760	-	hypothetical protein
1761	 42.78	-2	1991408..1992106	-	232	152983099	czcR1	mma_1761	-	heavy metal response regulator
1762	 46.67	-1	1992308..1992622	+	104	152983254	-	mma_1762	-	hypothetical protein
1763	 43.66	-2	1992718..1993143	-	141	152983100	flgB2	mma_1763	-	flagellar basal-body rod protein FlgB
1764	 44.73	-2	1993155..1994672	-	505	152983101	-	mma_1764	-	hypothetical protein
1765	 47.09	-1	1994796..1995842	-	348	152983102	gtrB2	mma_1765	-	glucosyl transferase
1766	 41.73	-2	1996051..1996443	-	130	152983424	-	mma_1766	-	hypothetical protein
1767	 46.90	-1	1996751..1997701	-	316	152983103	czcD1	mma_1767	-	cobalt-zinc-cadmium resistance protein CzcD
1768	 48.99	-1	1998124..1998570	-	148	152983104	-	mma_1768	-	MgtC family protein
1769	 48.47	-1	1998666..2001890	-	1074	152982939	czcA4	mma_1769	-	CzcA family cobalt/zinc/cadmium efflux transporter permease
1770	 50.88	0	2001905..2002246	-	113	152983105	glnB2	mma_1770	-	nitrogen regulatory protein PII
1771	 47.56	-1	2002257..2003837	-	526	152983106	czcB4	mma_1771	-	cobalt-zinc-cadmium resistance protein CzcB
1772	 50.54	-1	2003846..2005135	-	429	152983107	czcC1	mma_1772	-	cobalt-zinc-cadmium outer membrane resistance protein czcC
1773	 46.39	-2	2005229..2005588	-	119	152983423	czcI	mma_1773	-	cobalt-zinc-cadmium resistance protein CzcI
1774	 42.87	-2	2005763..2007283	-	506	152983183	-	mma_1774	-	hypothetical protein
1775	 45.92	-2	2007280..2008320	-	346	152983184	-	mma_1775	-	hypothetical protein
1776	 47.76	-1	2008329..2010311	-	660	152983185	-	mma_1776	-	hypothetical protein
1777	 45.34	-2	2010298..2011005	-	235	152983186	-	mma_1777	-	hypothetical protein
1778	 51.26	0	2011619..2011975	-	118	152983422	-	mma_1778	-	hypothetical protein
1779	 42.19	-2	2012066..2012686	-	206	152983421	-	mma_1779	-	hypothetical protein
1780	 52.27	0	2012686..2013588	-	300	152983187	-	mma_1780	-	hypothetical protein
1781	 51.56	0	2014144..2015361	-	405	152983108	-	mma_1781	-	hypothetical protein
1782	 51.88	0	2015364..2015708	-	114	152982426	-	mma_1782	-	hypothetical protein
1783	 49.54	-1	2015718..2017142	-	474	152983188	-	mma_1783	-	hypothetical protein
1784	 50.49	-1	2017847..2018155	-	102	152983255	-	mma_1784	-	hypothetical protein
1785	 47.04	-1	2018306..2018626	+	106	152983420	-	mma_1785	-	hypothetical protein
1786	 54.99	0	2018828..2019649	+	273	152982780	-	mma_1786	-	hypothetical protein
1787	 52.91	0	2019730..2020056	+	108	152983109	-	mma_1787	-	hypothetical protein
1788	 49.00	-1	2020065..2020415	-	116	152982411	-	mma_1788	-	hypothetical protein
1789	 53.07	0	2020545..2021162	-	205	152982432	-	mma_1789	-	hypothetical protein
1790	 52.87	0	2021284..2021979	-	231	152982091	-	mma_1790	-	phosphatidylglycerophosphatase B-related protein
1791	 57.47	0	2022192..2022767	-	191	152982429	-	mma_1791	-	hypothetical protein
1792	 57.60	0	2022910..2026065	-	1051	152981249	czcA5	mma_1792	-	CzcA family heavy metal efflux protein
1793	 56.82	0	2026084..2027352	-	422	152981853	czcB5	mma_1793	-	CzcB family cobalt/zinc/cadmium efflux transporter membrane fusion protein
1794	 59.37	+1	2027392..2028666	-	424	152981747	czcC2	mma_1794	-	cobalt-zinc-cadmium outer membrane resistance protein
1795	 56.03	0	2028741..2029088	-	115	152982740	-	mma_1795	-	hypothetical protein
1796	 58.14	0	2029136..2031364	-	742	152981047	zntA1	mma_1796	-	cation-translocating P-type ATPase
1797	 52.19	0	2031474..2031929	+	151	152981900	-	mma_1797	-	MerR family transcriptional regulator
1798	 52.94	0	2031977..2032588	-	203	152982655	-	mma_1798	-	hypothetical protein
1799	 50.96	0	2032630..2032992	-	120	152982832	-	mma_1799	-	hypothetical protein
1800	 51.73	0	2033154..2033615	-	153	152981786	ptsN1	mma_1800	-	PTS system, nitrogen regulatory IIA component
1801	 55.89	0	2033826..2034224	+	132	152982940	-	mma_1801	-	hypothetical protein
1802	 56.71	0	2034258..2035211	+	317	152981176	dapA2	mma_1802	-	dihydrodipicolinate synthase
1803	 53.58	0	2035223..2036032	+	269	152982651	-	mma_1803	-	hypothetical protein
1804	 60.06	+1	2036272..2037723	+	483	152982334	-	mma_1804	-	hypothetical protein
1805	 60.32	+1	2037756..2038433	+	225	152981916	-	mma_1805	-	hypothetical protein
1806	 52.47	0	2038814..2040067	+	417	152980511	livK5	mma_1806	-	branched-chain amino acid transport system substrate-binding protein
1807	 59.25	+1	2040241..2041857	+	538	152980537	livH5	mma_1807	-	ABC-type branched-chain amino acid transport system permease protein
1808	 55.10	0	2041854..2042951	+	365	152981369	livM5	mma_1808	-	ABC-type branched-chain amino acid transport system, permease component
1809	 54.56	0	2042948..2043814	+	288	152980952	livG5	mma_1809	-	branched-chain amino acid ABC transporter, ATP-binding protein
1810	 56.08	0	2043819..2044517	+	232	152980737	livF5	mma_1810	-	ABC-type branched-chain amino acid transport system ATP-binding protein
1811	 61.50	+1	2044566..2045456	+	296	152981291	ureD	mma_1811	-	urease accessory protein UreD
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.