IslandPathversion 1.0

IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.72 STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1054	 56.00	0	1186841..1188472	+	543	152980478	pqiB	mma_1054	-	paraquat-inducible protein B
1055	 60.03	+1	1188469..1189131	+	220	152980001	-	mma_1055	-	hypothetical protein
1056	 56.54	0	1189136..1190221	-	361	152979810	-	mma_1057	-	LysR family transcriptional regulator
1057	 54.67	0	1190172..1191338	+	388	152979769	-	mma_1056	-	mandelate racemase/muconate lactonizing enzyme family protein
1058	 51.82	0	1191592..1191975	-	127	152982544	-	mma_1058	-	hypothetical protein
1059	 54.80	0	1192078..1192431	-	117	152982490	-	mma_1059	-	hypothetical protein
1060	 49.44	-1	1192754..1193200	+	148	152980067	-	mma_1060	-	two-components system response regulator
1061	 57.33	0	1193294..1194193	+	299	152979983	-	mma_1061	-	hypothetical protein
1062	 56.67	0	1194138..1197299	-	1053	152980176	-	mma_1062	-	autotransporter
1063	 55.90	0	1197777..1198556	+	259	152980266	fpr	mma_1063	-	ferredoxin--NADP+ reductase
1064	 57.09	0	1198998..1200710	+	570	152981910	-	mma_1064	-	multidrug efflux system transmembrane protein
1065	 58.36	0	1200722..1202695	+	657	152980250	-	mma_1065	-	macrolide ABC efllux protein
1066	 59.82	+1	1202706..1204121	+	471	152979834	-	mma_1066	-	outer membrane efflux protein
1067	 59.30	+1	1204173..1205462	-	429	152980094	-	mma_1067	-	cytosine/purine/uracil/thiamine/allantoin permease family protein (NCS1 family)
1068	 50.55	-1	1205851..1206303	+	150	152980369	-	mma_1068	-	hypothetical protein
1069	 56.75	0	1206579..1207526	+	315	152980343	-	mma_1069	-	hypothetical protein
1070	 54.98	0	1207579..1208391	-	270	152980230	-	mma_1070	-	component of ABC-type phosphonate transport system
1071	 55.83	0	1208673..1209161	+	162	152982778	-	mma_1071	-	hypothetical protein
1072	 57.75	0	1209264..1209689	+	141	152982136	-	mma_1072	-	hypothetical protein
1073	 54.43	0	1209764..1210000	+	78	152983345	-	mma_1073	-	hypothetical protein
1074	 56.31	0	1210118..1211788	+	556	152979791	prfC	mma_1074	-	peptide chain release factor 3
1075	 54.47	0	1211933..1213309	+	458	152980380	-	mma_1075	-	hypothetical protein
1076	 57.42	0	1213317..1213781	-	154	152980622	-	mma_1076	-	hypothetical protein
1077	 58.96	+1	1213884..1215245	-	453	152979992	nhaA	mma_1077	-	NhaA family Na(+)/H(+) antiporter
1078	 52.40	0	1215696..1217111	+	471	152979825	glnA	mma_1078	-	glutamine synthetase
1079	 52.17	0	1217284..1217766	+	160	152980203	-	mma_1079	-	hypothetical protein
1080	 56.65	0	1217878..1218915	+	345	152980593	ntrB	mma_1080	-	nitrogen regulation (sensor protein kinase) transcription regulator
1081	 56.41	0	1218984..1220504	+	506	152980688	ntrC	mma_1081	-	nitrogen regulation protein NR(I)
1082	 55.89	0	1220874..1222562	+	562	152980725	-	mma_1082	-	alanine/aspartate exchanger
1083	 56.42	0	1222614..1224302	+	562	152980303	-	mma_1083	-	alanine/aspartate exchanger
1084	 52.17	0	1224362..1226017	+	551	152980283	asdA	mma_1084	-	aspartate aminotransferase
1085	 59.25	+1	1226088..1227935	-	615	152980198	cheA2	mma_1085	-	CheA chemotaxis protein
1086	 57.32	0	1227935..1228726	-	263	152981520	cheZ1	mma_1086	-	CheZ chemotaxis protein
1087	 57.32	0	1229229..1230266	+	345	152980374	cobT	mma_1087	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1088	 55.72	0	1230286..1231098	+	270	152980635	cobS	mma_1088	-	cobalamin (5'-phosphate) synthase
1089	 54.05	0	1231107..1231661	+	184	152982696	-	mma_1089	-	phosphoglycerate mutase family protein
1090	 57.83	0	1231658..1232449	-	263	152982658	-	mma_1090	-	hypothetical protein
1091	 50.82	0	1232928..1234928	+	666	152982674	-	mma_1091	-	outer membrane hemin/siderophore receptor protein
1092	 48.18	-1	1235441..1237312	+	623	152981186	-	mma_1092	-	hypothetical protein
1093	 58.67	0	1237445..1238470	+	341	152982275	-	mma_1093	-	ABC-type transport system, permease component
1094	 56.55	0	1238470..1239240	+	256	152982657	-	mma_1094	-	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components
1095	 55.71	0	1239237..1239866	+	209	152980675	cobO	mma_1095	-	cob(I)alamin adenosyltransferase
1096	 58.80	0	1239867..1241162	+	431	152979999	cobB	mma_1096	-	cobyrinic acid a,c-diamide synthase
1097	 58.65	0	1241162..1241710	+	182	152980495	cobU	mma_1097	-	cobinamide kinase / conamide phosphate guanylyltransferase
1098	 58.28	0	1241712..1242653	+	313	152980055	cobD2	mma_1098	-	cobalamin biosynthesis protein CobD
1099	 58.18	0	1242646..1243623	+	325	152981374	cobC	mma_1099	-	cobalamin biosynthetic protein CobC
1100	 55.41	0	1243643..1244539	+	298	152982795	-	mma_1100	-	ABC-type transport system, periplasmic component
1101	 60.80	+1	1244563..1245993	+	476	152980577	cobQ	mma_1101	-	cobyric acid synthase
1102	 55.61	0	1246183..1246797	+	204	152982303	parA2	mma_1102	-	ParA family protein
1103	 55.43	0	1246794..1247309	+	171	152981784	-	mma_1103	-	hypothetical protein
1104	 56.69	0	1247355..1247765	+	136	152982833	-	mma_1104	-	hypothetical protein
1105	 53.81	0	1247832..1248671	-	279	152980410	panC	mma_1105	-	pantoate--beta-alanine ligase
1106	 57.11	0	1248758..1249636	-	292	152981409	scpA	mma_1106	-	segregation and condensation protein A
1107	 50.70	0	1249637..1249849	-	70	152983233	-	mma_1107	-	hypothetical protein
1108	 55.42	0	1250071..1250550	+	159	152982144	-	mma_1108	-	hypothetical protein
1109	 57.23	0	1250547..1252253	-	568	152980676	sulP1	mma_1109	-	SulP family sulfate permease
1110	 59.55	+1	1252382..1253182	-	266	152981015	-	mma_1110	-	Short-chain dehydrogenase
1111	 58.87	+1	1253330..1253893	+	187	152982094	-	mma_1111	-	TetR family transcriptional regulator
1112	 55.92	0	1253977..1256079	-	700	152979917	metG	mma_1112	-	methionyl-tRNA synthetase
1113	 57.47	0	1256319..1257710	+	463	152980247	gltX	mma_1113	-	glutamyl-tRNA synthetase
1114	 53.14	0	1258451..1259056	+	201	152982111	-	mma_1114	-	transcription factor
1115	 53.11	0	1259084..1259983	+	299	152982597	-	mma_1115	-	hypothetical protein
1116	 53.51	0	1259973..1261523	+	516	152981509	yahF	mma_1116	-	oxidoreductase
1117	 55.77	0	1261520..1262950	+	476	152982286	yahG	mma_1117	-	hypothetical protein
1118	 56.24	0	1263175..1264728	+	517	152982495	-	mma_1118	-	hypothetical protein
1119	 54.09	0	1264815..1265768	+	317	152979964	arcC1	mma_1119	-	putative carbamate kinase
1120	 52.99	0	1265859..1266794	+	311	152982861	-	mma_1120	-	LysR family transcriptional regulator
1121	 56.38	0	1266921..1267406	+	161	152982023	-	mma_1121	-	MarR family transcriptional regulator
1122	 58.37	0	1267432..1268937	+	501	152981378	tolC4	mma_1122	-	outer membrane protein, tolC-like
1123	 57.58	0	1268934..1270133	+	399	152979788	emrA	mma_1123	-	multidrug resistance protein A, emrA
1124	 57.79	0	1270137..1271690	+	517	152982589	emrB	mma_1124	-	major facilitator superfamily multidrug resistance B translocase
1125	 58.14	0	1271749..1272909	+	386	152981009	-	mma_1125	-	hypothetical protein
1126	 46.35	-2	1273036..1273611	+	191	152981774	efp	mma_1126	-	elongation factor EF-P
1127	 54.95	0	1273678..1274667	-	329	152982516	-	mma_1127	-	hypothetical protein
1128	 52.95	0	1274683..1275972	-	429	152981024	-	mma_1128	-	hypothetical protein
1129	 51.10	0	1276228..1276908	+	226	152982105	-	mma_1129	-	hypothetical protein
1130	 51.21	0	1277073..1277939	+	288	152980435	purU	mma_1130	-	formyltetrahydrofolate deformylase
1131	 55.35	0	1278128..1278790	-	220	152981594	-	mma_1131	-	phospholipase/carboxylesterase
1132	 58.70	0	1278826..1279440	-	204	152980224	mog	mma_1132	-	Mog molybdopterin biosynthesis protein
1133	 56.29	0	1279424..1280011	-	195	152981589	-	mma_1133	-	hypothetical protein
1134	 55.16	0	1280100..1281464	+	454	152980976	pmbA	mma_1134	-	PmbA protein
1135	 51.30	0	1281644..1282723	+	359	152981760	fcbTp2	mma_1135	-	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
1136	 53.78	0	1282958..1284649	-	563	152980992	fcbTl2	mma_1136	-	TRAP-type mannitol/chloroaromatic compound transport system, large permease component
1137	 50.94	0	1284665..1285249	-	194	152981355	fcbTs2	mma_1137	-	TRAP-type mannitol/chloroaromatic compound transport system, small permease component
1138	 58.21	0	1285591..1286985	-	464	152979989	argH	mma_1138	-	argininosuccinate lyase
1139	 58.23	0	1287140..1288111	+	323	152982870	-	mma_1139	-	two-component system sensor protein
1140	 56.78	0	1288108..1288896	+	262	152981608	algR	mma_1140	-	alginate biosynthesis regulatory protein AlgR
1141	 57.53	0	1288967..1291846	-	959	152980037	ppc	mma_1141	-	phosphoenolpyruvate carboxylase
1142	 60.80	+1	1292064..1293017	+	317	152980451	hemC	mma_1142	-	hydroxymethylbilane synthase
1143	 56.81	0	1293010..1293780	+	256	152981768	hemD	mma_1143	-	uroporphyrinogen-III synthase
1144	 56.48	0	1293786..1294934	+	382	152981436	hemX	mma_1144	-	uroporphyrin-III C-methyltransferase
1145	 57.23	0	1294995..1296191	+	398	152980339	hemY	mma_1145	-	HemY protein
1146	 51.11	0	1296350..1296889	+	179	152979859	ppa	mma_1146	-	inorganic pyrophosphatase
1147	 54.72	0	1296972..1297850	-	292	152982634	-	mma_1147	-	transporter of the DMT superfamily
1148	 57.03	0	1297921..1298958	-	345	152981619	-	mma_1148	-	serine/threonine protein kinase
1149	 56.89	0	1299035..1300180	-	381	152981091	-	mma_1149	-	hypothetical protein
1150	 56.32	0	1300261..1301874	+	537	152979996	nadE1	mma_1150	-	NAD synthetase
1151	 55.46	0	1301957..1302295	+	112	152981593	glnK2	mma_1151	-	nitrogen regulatory protein PII
1152	 58.26	0	1302343..1302984	-	213	152981621	-	mma_1152	-	hypothetical protein
1153	 57.65	0	1303075..1304028	-	317	152980722	trxB	mma_1153	-	thioredoxin reductase (NADPH)
54.72	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.