IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
949	 63.35	0	971665..972447	+	260	114798582	-	HNE_0957	-	enoyl-CoA hydratase
950	 66.41	+1	972493..973269	-	258	114797833	-	HNE_0958	-	extradiol-type ring-opening dioxygenase
951	 65.10	0	973446..974657	+	403	114799237	bktB	HNE_0959	-	acetyl-CoA acetyltransferase
952	 54.29	-2	974869..975078	+	69	114797581	-	HNE_0960	-	cold shock protein
953	 61.35	0	975176..975871	-	231	114797232	-	HNE_0961	-	hypothetical protein
954	 66.18	+1	975967..977412	-	481	114797982	-	HNE_0962	-	sodium:sulfate symporter family protein
955	 69.18	+1	977672..978865	+	397	114799642	-	HNE_0964	-	HPP family/CBS domain-containing protein
956	 63.96	0	978966..979592	-	208	114800457	-	HNE_0965	-	acyl carrier protein phosphodiesterase
957	 61.49	0	979736..981010	-	424	114797597	-	HNE_0966	-	hypothetical protein
958	 61.49	0	980928..982763	+	611	114798384	-	HNE_0967	-	histidine kinase A domain-containing protein
959	 61.82	0	982784..983650	-	288	114797659	-	HNE_0968	-	pirin family protein
960	 57.97	-1	983736..983873	+	45	114799361	-	HNE_0969	-	hypothetical protein
961	 63.31	0	983770..985080	+	436	114800195	-	HNE_0970	-	amidohydrolase family protein
962	 64.80	0	985203..986324	-	373	114797819	ald	HNE_0971	-	alanine dehydrogenase
963	 54.29	-2	986296..986505	+	69	114797157	-	HNE_0972	-	hypothetical protein
964	 61.26	0	986483..987148	-	221	114799574	-	HNE_0973	-	hypothetical protein
965	 63.71	0	987352..988164	-	270	114799895	-	HNE_0974	-	short chain dehydrogenase/reductase family oxidoreductase
966	 60.13	0	988303..988761	+	152	114799120	-	HNE_0975	-	BLUF domain-containing protein
967	 63.46	0	988841..990838	-	665	114798323	parE	HNE_0976	-	DNA topoisomerase IV subunit B
968	 62.33	0	991154..993574	+	806	114797553	lon	HNE_0977	-	ATP-dependent protease La
969	 65.71	0	993902..994945	+	347	114800345	-	HNE_0979	-	hypothetical protein
970	 59.72	0	995032..996513	+	493	114799347	-	HNE_0980	-	putative 4-hydroxyacetophenone monooxygenase
971	 61.47	0	996564..997409	-	281	114799557	-	HNE_0981	-	enoyl-CoA hydratase/isomerase family protein
972	 68.45	+1	997477..998487	-	336	114798560	gpsA	HNE_0982	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
973	 61.22	0	998673..999278	+	201	114800084	-	HNE_0983	-	hypothetical protein
974	 65.61	0	999271..1000788	-	505	114797538	-	HNE_0984	-	acetyl-CoA acetyltransferase
975	 64.06	0	1000907..1001905	-	332	114798230	dhlA	HNE_0985	-	haloalkane dehalogenase
976	 69.75	+2	1002012..1002659	-	215	114797492	-	HNE_0986	-	LysE family translocator protein
977	 68.64	+1	1002664..1003272	-	202	114799700	-	HNE_0987	-	putative 2-hydroxychromene-2-carboxylate isomerase
978	 64.96	0	1003430..1004659	+	409	114798969	-	HNE_0988	-	monooxygenase
979	 60.61	0	1004664..1005026	+	120	114799099	-	HNE_0989	-	hypothetical protein
980	 63.62	0	1005055..1005777	-	240	114799094	arsH	HNE_0990	-	arsenical resistance protein ArsH
981	 65.71	0	1005770..1006189	-	139	114799478	arsC	HNE_0991	-	arsenate reductase
982	 65.40	0	1006203..1007228	-	341	114797435	-	HNE_0992	-	putative arsenical-resistance protein
983	 64.90	0	1007299..1007637	-	112	114797955	-	HNE_0993	-	ArsR family transcriptional regulator
984	 64.20	0	1007756..1008850	+	364	114798715	-	HNE_0994	-	major facilitator family transporter
985	 61.49	0	1008892..1009065	+	57	114800002	-	HNE_0995	-	hypothetical protein
986	 58.67	0	1009084..1009821	+	245	114800531	-	HNE_0996	-	hypothetical protein
987	 65.96	+1	1009900..1010748	-	282	114797575	-	HNE_0997	-	universal stress protein family protein
988	 61.57	0	1010761..1012251	-	496	114798521	-	HNE_0998	-	sulfate permease family inorganic anion transporter
989	 60.10	0	1012434..1012844	-	136	114799079	-	HNE_0999	-	hypothetical protein
990	 64.84	0	1013179..1013562	+	127	114797361	crcB	HNE_1001	-	crcB protein
991	 64.29	0	1013559..1014608	+	349	114797120	-	HNE_1002	-	RluA family pseudouridine synthase
992	 66.11	+1	1014611..1015324	+	237	114799903	-	HNE_1003	-	HAD family hydrolase
993	 62.55	0	1015423..1015908	+	161	114799379	-	HNE_1004	-	hypothetical protein
994	 64.88	0	1015972..1016700	+	242	114798619	-	HNE_1005	-	ATP12 chaperone family protein
995	 65.09	0	1016745..1017314	+	189	114798463	-	HNE_1006	-	hypothetical protein
996	 60.60	0	1017471..1019003	+	510	114797686	-	HNE_1007	-	putative propionyl-CoA carboxylase, beta subunit
997	 62.30	0	1019149..1021233	+	694	114799091	-	HNE_1008	-	amidohydrolase family protein
998	 62.00	0	1021265..1022014	+	249	114798058	-	HNE_1009	-	hypothetical protein
999	 61.67	0	1022167..1023126	+	319	114799196	-	HNE_1010	-	hypothetical protein
1000	 61.37	0	1023565..1024941	+	458	114799446	-	HNE_1011	-	hypothetical protein
1001	 62.79	0	1024954..1025727	+	257	114800242	-	HNE_1012	-	hypothetical protein
1002	 64.43	0	1025764..1026210	-	148	114797405	-	HNE_1013	-	MarR family transcriptional regulator
1003	 62.58	0	1026338..1026997	+	219	114797468	-	HNE_1014	-	glutathione S-transferase
1004	 62.30	0	1026913..1027347	+	144	114798076	-	HNE_1015	-	hypothetical protein
1005	 62.53	0	1027360..1027842	+	160	114798857	-	HNE_1016	-	3-demethylubiquinone-9 3-methyltransferase family protein
1006	 62.38	0	1027839..1028048	+	69	114797808	-	HNE_1017	-	hypothetical protein
1007	 61.82	0	1028077..1028571	+	164	114797829	-	HNE_1018	-	glyoxalase family protein
1008	 59.83	0	1028586..1029302	+	238	114798018	-	HNE_1019	-	hypothetical protein
1009	 64.28	0	1029563..1030441	+	292	114798934	-	HNE_1020	-	putative outer membrane protein
1010	 65.11	0	1030514..1032376	-	620	114799559	-	HNE_1021	-	polysaccharide biosynthesis protein
1011	 64.88	0	1032780..1033562	+	260	114800465	-	HNE_1023	-	outer membrane protein
1012	 64.14	0	1033567..1034595	-	342	114797510	-	HNE_1024	-	KpsF/GutQ family sugar isomerase
1013	 64.03	0	1034657..1035985	-	442	114799142	-	HNE_1025	-	putative D-alanyl-D-alanine carboxypeptidase
1014	 62.11	0	1036224..1036640	+	138	114799945	-	HNE_1026	-	phasin
1015	 67.50	+1	1036874..1038190	+	438	114797154	-	HNE_1027	-	hypothetical protein
1016	 62.19	0	1038225..1038626	+	133	114797951	-	HNE_1028	-	hypothetical protein
1017	 57.14	-1	1038725..1039081	+	118	114799620	clpS	HNE_1029	-	ATP-dependent Clp protease, adaptor protein ClpS
1018	 61.79	0	1039139..1041454	+	771	114797928	clpA	HNE_1030	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
1019	 63.26	0	1041587..1042789	+	400	114800004	-	HNE_1031	-	putative esterase
1020	 64.90	0	1042786..1043181	-	131	114799201	-	HNE_1032	-	hypothetical protein
1021	 66.67	+1	1043222..1043596	-	124	114799605	-	HNE_1033	-	rhodanese domain-containing protein
1022	 65.46	0	1043633..1045036	-	467	114798375	tldD	HNE_1034	-	TldD protein
1023	 65.33	0	1045089..1045685	-	198	114797233	-	HNE_1035	-	TetR family transcriptional regulator
1024	 65.21	0	1045839..1046594	+	251	114800536	-	HNE_1036	-	short chain dehydrogenase/reductase family oxidoreductase
1025	 64.86	0	1046691..1047242	-	183	114799231	-	HNE_1037	-	TPR repeat-containing protein
1026	 62.02	0	1047395..1048363	+	322	114798124	coxB	HNE_1038	-	cytochrome c oxidase, subunit II
1027	 61.87	0	1048387..1050075	+	562	114799015	-	HNE_1039	-	cytochrome c oxidase, subunit I
1028	 65.52	0	1050186..1051142	+	318	114798218	cyoE	HNE_1040	-	protoheme IX farnesyltransferase
1029	 64.37	0	1051144..1051317	+	57	114800186	-	HNE_1041	-	hypothetical protein
1030	 62.46	0	1051317..1051934	+	205	114799995	-	HNE_1042	-	cytochrome c oxidase assembly protein
1031	 61.89	0	1052011..1052889	+	292	114797213	-	HNE_1043	-	cytochrome c oxidase, subunit III
1032	 64.17	0	1053032..1053712	+	226	114797935	-	HNE_1044	-	hypothetical protein
1033	 66.96	+1	1053709..1055091	+	460	114799665	thrC	HNE_1045	-	threonine synthase
1034	 63.51	0	1055102..1055671	+	189	114800424	-	HNE_1046	-	acetyltransferase
1035	 66.89	+1	1055822..1056715	+	297	114799639	-	HNE_1047	-	EAL domain-containing protein
1036	 59.59	0	1056721..1057299	+	192	114800284	-	HNE_1048	-	hypothetical protein
1037	 62.79	0	1057306..1057872	-	188	114797613	-	HNE_1049	-	hypothetical protein
1038	 66.85	+1	1057937..1059007	-	356	114798455	-	HNE_1050	-	PepSY-associated TM helix domain-containing protein
1039	 62.31	0	1059013..1061328	-	771	114797488	-	HNE_1051	-	TonB dependent receptor
1040	 62.73	0	1061404..1061886	+	160	114800089	-	HNE_1052	-	anti-oxidant AhpCTSA family protein
1041	 63.66	0	1062038..1063003	+	321	114799116	-	HNE_1053	-	HflC/HflK family protein
1042	 64.73	0	1063030..1063494	+	154	114799456	-	HNE_1054	-	nodulation efficiency protein D family protein
1043	 70.59	+2	1063614..1064480	-	288	114798440	-	HNE_1055	-	hypothetical protein
1044	 67.42	+1	1064543..1065469	-	308	114797915	-	HNE_1056	-	ISHne3, transposase
1045	 66.26	+1	1065676..1066896	-	406	114799828	-	HNE_1057	-	beta-lactamase
1046	 61.53	0	1067060..1069066	+	668	114799012	-	HNE_1058	-	carbamoyl-phosphate synthase L chain/biotin carboxylase
1047	 59.57	0	1069247..1069669	+	140	114799833	-	HNE_1059	-	hypothetical protein
1048	 65.09	0	1069904..1070347	+	147	114799192	-	HNE_1060	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.