IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
844	 68.67	+1	870468..870965	+	165	114799408	-	HNE_0851	-	putative lipoprotein
845	 63.28	0	871036..872394	+	452	114800347	-	HNE_0852	-	insulinase family protein
846	 65.32	0	872394..873809	+	471	114797798	-	HNE_0853	-	M16 family peptidase
847	 67.72	+1	874144..875094	-	316	114798794	-	HNE_0854	-	hypothetical protein
848	 62.25	0	875094..875705	-	203	114799013	-	HNE_0855	-	HD domain-containing protein
849	 56.67	-1	875913..876062	+	49	114799853	-	HNE_0856	-	hypothetical protein
850	 61.05	0	876077..877198	-	373	114797280	-	HNE_0857	-	3-oxoacyl-(acyl carrier protein) synthase III
851	 63.80	0	877327..877605	-	92	114798297	-	HNE_0858	-	hypothetical protein
852	 62.25	0	877602..877805	-	67	114797522	-	HNE_0859	-	putative lipoprotein
853	 59.79	0	877802..878383	-	193	114798473	tag	HNE_0860	-	DNA-3-methyladenine glycosylase I
854	 64.58	0	878376..879191	-	271	114798165	-	HNE_0861	-	putative aminomethyltransferase
855	 64.35	0	879289..880629	+	446	114799203	-	HNE_0862	-	dihydroorotase
856	 60.88	0	880658..882073	+	471	114799838	-	HNE_0863	-	hypothetical protein
857	 64.15	0	882196..884064	+	622	114797749	fcs2	HNE_0864	-	feruloyl-CoA synthase
858	 68.09	+1	884345..885892	+	515	114798777	-	HNE_0865	-	hypothetical protein
859	 62.51	0	885959..888049	-	696	114799589	-	HNE_0866	-	S9A/B/C family peptidase
860	 66.67	+1	888225..888878	-	217	114800358	-	HNE_0867	-	hypothetical protein
861	 61.72	0	888863..889246	-	127	114799997	-	HNE_0868	-	hypothetical protein
862	 61.90	0	889593..891374	+	593	114798532	-	HNE_0869	-	ribonucleotide-diphosphate reductase subunit alpha
863	 64.47	0	891722..892585	+	287	114797589	-	HNE_0870	-	hypothetical protein
864	 60.53	0	892661..893230	-	189	114800400	-	HNE_0871	-	hypothetical protein
865	 60.40	0	893387..893737	+	116	114799587	rpoZ	HNE_0872	-	DNA-directed RNA polymerase subunit omega
866	 62.48	0	893746..896013	+	755	114798559	-	HNE_0873	-	RelA/SpoT family protein
867	 63.23	0	896003..896584	+	193	114797568	pyrE	HNE_0874	-	orotate phosphoribosyltransferase
868	 66.53	+1	896584..897327	+	247	114799252	pdxJ	HNE_0875	-	pyridoxal phosphate biosynthetic protein PdxJ
869	 66.43	+1	897324..897737	+	137	114798027	-	HNE_0876	-	holo-(acyl-carrier-protein) synthase
870	 62.98	0	897785..898489	+	234	114797101	rnc	HNE_0877	-	ribonuclease III
871	 63.61	0	898486..899433	+	315	114799800	era	HNE_0878	-	GTP-binding protein Era
872	 67.62	+1	899440..900171	+	243	114799258	recO	HNE_0879	-	DNA repair protein RecO
873	 62.88	0	900178..900864	-	228	114800285	-	HNE_0880	-	extensin domain-containing protein
874	 62.42	0	900998..903232	+	744	114797721	parC	HNE_0881	-	DNA topoisomerase IV subunit A
875	 62.80	0	903504..904253	-	249	114798782	-	HNE_0882	-	Sir2 family transcriptional regulator
876	 61.57	0	904287..904757	-	156	114798046	-	HNE_0883	-	hypothetical protein
877	 63.39	0	904811..905146	+	111	114799505	-	HNE_0884	-	ArsR family transcriptional regulator
878	 65.81	+1	905143..905844	-	233	114800041	-	HNE_0885	-	hypothetical protein
879	 61.52	0	905991..906554	+	187	114797085	-	HNE_0886	-	LemA family protein
880	 62.99	0	906615..906968	+	117	114798880	-	HNE_0887	-	putative lipoprotein
881	 62.58	0	907043..907678	+	211	114799958	-	HNE_0888	-	putative lipoprotein
882	 64.47	0	907685..908821	-	378	114798381	-	HNE_0889	-	aminotransferase, classes I and II
883	 65.03	0	908840..910423	-	527	114797782	-	HNE_0890	-	TRAP dicarboxylate transporter, DctM subunit
884	 62.65	0	910413..911084	-	223	114798395	-	HNE_0891	-	TRAP transporter, DctQ-like membrane protein
885	 64.05	0	911103..912212	-	369	114797611	-	HNE_0892	-	solute-binding family 7 protein
886	 62.98	0	912283..913041	-	252	114799991	ate	HNE_0893	-	arginyl-tRNA-protein transferase
887	 62.70	0	913147..913827	-	226	114799250	-	HNE_0894	-	putative chemotaxis protein MotB
888	 66.78	+1	913961..914827	+	288	114797994	-	HNE_0895	-	3-hydroxyisobutyrate dehydrogenase family protein
889	 64.20	0	914827..915840	+	337	114797056	-	HNE_0896	-	hypothetical protein
890	 63.24	0	916005..916442	+	145	114797691	-	HNE_0897	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
891	 65.16	0	916471..917466	-	331	114800380	hemB	HNE_0898	-	delta-aminolevulinic acid dehydratase
892	 63.20	0	917498..918103	-	201	114799089	-	HNE_0899	-	acetyltransferase
893	 63.25	0	918103..919242	+	379	114800043	acad8	HNE_0900	-	acyl-CoA dehydrogenase
894	 62.54	0	919253..920101	-	282	114797103	-	HNE_0901	-	short chain dehydrogenase/reductase family oxidoreductase
895	 62.54	0	920285..921253	+	322	114798042	-	HNE_0902	-	glycerophosphoryl diester phosphodiesterase family protein
896	 62.05	0	921326..921715	+	129	114799562	-	HNE_0903	-	globin domain-containing protein
897	 65.59	0	921754..922308	+	184	114800490	-	HNE_0904	-	nickel-dependent hydrogenase, b-type cytochrome subunit
898	 60.48	0	922391..923230	+	279	114797498	-	HNE_0905	-	TauD/TfdA family dioxygenase
899	 56.09	-1	923259..923693	-	144	114798468	-	HNE_0906	-	hypothetical protein
900	 63.90	0	923676..924758	+	360	114799454	-	HNE_0907	-	enoyl-CoA hydratase/isomerase family protein
901	 56.52	-1	924794..925138	+	114	114800500	-	HNE_0908	-	SMR family multidrug efflux pump
902	 58.97	0	925389..925895	+	168	114797129	-	HNE_0909	-	putative transcriptional regulatory protein
903	 65.88	+1	926054..926563	+	169	114798741	-	HNE_0910	-	hypothetical protein
904	 64.11	0	926726..927391	+	221	114800226	-	HNE_0911	-	hypothetical protein
905	 68.64	+1	927397..927954	-	185	114797637	-	HNE_0912	-	cytochrome c family protein
906	 67.87	+1	928151..930055	+	634	114799039	mutL	HNE_0913	-	DNA mismatch repair protein
907	 69.15	+1	930139..931308	+	389	114800070	-	HNE_0914	-	beta-lactamase
908	 60.60	0	931305..932672	-	455	114800068	-	HNE_0915	-	endonuclease/exonuclease/phosphatase family protein
909	 65.88	+1	932772..934175	-	467	114797272	-	HNE_0916	-	oxidoreductase, FAD-binding
910	 66.04	+1	934529..934849	+	106	114798678	-	HNE_0917	-	hypothetical protein
911	 69.71	+2	934938..935561	-	207	114799502	-	HNE_0918	-	putative FMN-binding protein
912	 63.05	0	935626..936954	-	442	114799890	-	HNE_0919	-	beta-lactamase family protein
913	 66.67	+1	937061..938488	-	475	114797378	xseA	HNE_0920	-	exodeoxyribonuclease VII, large subunit
914	 64.19	0	938709..939557	+	282	114798268	-	HNE_0921	-	hypothetical protein
915	 64.58	0	939626..940918	+	430	114799064	purD	HNE_0922	-	phosphoribosylamine--glycine ligase
916	 65.16	0	940915..941976	-	353	114799375	-	HNE_0923	-	zinc-binding dehydrogenase family oxidoreductase
917	 64.39	0	942005..942793	-	262	114800243	-	HNE_0924	-	short chain dehydrogenase/reductase family oxidoreductase
918	 62.37	0	942756..943454	+	232	114798572	-	HNE_0926	-	hypothetical protein
919	 63.31	0	942807..943343	-	178	114797832	-	HNE_0925	-	hypothetical protein
920	 65.31	0	943521..944183	+	220	114797924	-	HNE_0927	-	TetR family transcriptional regulator
921	 62.25	0	944187..944435	-	82	114798635	-	HNE_0928	-	hypothetical protein
922	 60.58	0	944488..945078	-	196	114799794	-	HNE_0929	-	hypothetical protein
923	 60.51	0	945193..946281	+	362	114797271	-	HNE_0930	-	phosphotransferase enzyme family protein
924	 61.38	0	946329..947519	+	396	114798199	-	HNE_0931	-	major facilitator family transporter
925	 59.85	0	947564..948472	+	302	114799963	-	HNE_0932	-	hypothetical protein
926	 61.11	0	948469..948828	+	119	114797427	-	HNE_0933	-	hypothetical protein
927	 60.17	0	948889..950166	+	425	114798392	-	HNE_0934	-	amidohydrolase family protein
928	 64.66	0	950290..951138	+	282	114799403	-	HNE_0935	-	ompA family protein
929	 62.65	0	951142..952212	-	356	114797759	-	HNE_0936	-	hypothetical protein
930	 62.77	0	952234..952977	-	247	114797130	-	HNE_0937	-	enoyl-CoA hydratase/isomerase family protein
931	 57.29	-1	952974..954296	-	440	114798104	-	HNE_0938	-	cytochrome P450 family protein
932	 59.87	0	954375..955712	-	445	114798162	-	HNE_0939	-	cytochrome P450 family protein
933	 64.92	0	955746..956663	-	305	114798538	-	HNE_0940	-	pseudouridine synthase rsuA family protein
934	 63.93	0	956688..957089	-	133	114797525	-	HNE_0941	-	hypothetical protein
935	 68.25	+1	957380..958327	+	315	114800519	-	HNE_0942	-	flagellar biosynthesis protein FlhF-like protein
936	 63.56	0	958332..959168	+	278	114799550	motR	HNE_0943	-	motR protein
937	 58.40	-1	959302..960015	+	237	114797249	ctrA	HNE_0944	-	DNA-binding response regulator CtrA
938	 60.49	0	960110..960562	-	150	114799775	rnhA	HNE_0945	-	ribonuclease H
939	 66.67	+1	960606..961124	-	172	114800157	-	HNE_0946	-	putative lipoprotein
940	 62.51	0	961193..962179	-	328	114798237	thrB	HNE_0947	-	homoserine kinase
941	 61.27	0	962191..963690	-	499	114798525	-	HNE_0948	-	major facilitator family transporter
942	 62.73	0	963728..965227	-	499	114797089	-	HNE_0949	-	major facilitator family transporter
943	 66.22	+1	965497..967080	+	527	114800145	-	HNE_0950	-	ABC transporter, ATP-binding protein
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.