IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
41	 63.55	0	32822..33367	+	181	114798866	rimM	HNE_0041	-	16S rRNA processing protein RimM
42	 70.09	+2	33458..34978	+	506	114798164	-	HNE_0042	-	beta/gamma crystallin domain-containing protein
43	 61.60	0	34988..35737	-	249	114797767	-	HNE_0043	-	glycosyl transferase, group 2 family protein
44	 64.34	0	35891..37696	+	601	114799732	kefC	HNE_0044	-	glutathione-regulated potassium-efflux system protein KefC
45	 63.10	0	37728..38483	+	251	114797793	trmD	HNE_0045	-	tRNA (guanine-N1)-methyltransferase
46	 60.90	0	38470..39024	+	184	114797917	rplS	HNE_0046	-	50S ribosomal protein L19
47	 63.30	0	39148..40545	+	465	114800168	leuC1	HNE_0047	-	isopropylmalate isomerase large subunit
48	 61.99	0	40571..41533	+	320	114800485	bioB	HNE_0048	-	biotin synthase
49	 63.21	0	41629..42612	+	327	114799333	cysK	HNE_0049	-	cysteine synthase A
50	 60.56	0	42705..43343	+	212	114798524	-	HNE_0050	-	glutathione S-transferase
51	 63.49	0	43340..44188	+	282	114798233	-	HNE_0051	-	glyoxalase family protein
52	 60.79	0	44200..44829	+	209	114799969	leuD1	HNE_0052	-	3-isopropylmalate dehydratase, small subunit
53	 57.63	-1	44952..45272	+	106	114798050	-	HNE_0053	-	putative lipoprotein
54	 59.09	0	45471..45668	+	65	114798012	-	HNE_0054	-	hypothetical protein
55	 57.94	-1	45729..46049	+	106	114797061	-	HNE_0055	-	putative lipoprotein
56	 64.86	0	46142..47194	+	350	114800090	leuB	HNE_0056	-	3-isopropylmalate dehydrogenase
57	 59.61	0	47276..48466	+	396	114799080	-	HNE_0057	-	amidohydrolase family protein
58	 60.43	0	48521..48889	+	122	114800136	-	HNE_0058	-	ArsR family transcriptional regulator
59	 58.80	0	48886..49419	+	177	114799115	-	HNE_0059	-	hypothetical protein
60	 59.41	0	49416..49787	-	123	114798586	-	HNE_0060	-	hypothetical protein
61	 59.42	0	49913..50947	+	344	114797625	asd	HNE_0061	-	aspartate-semialdehyde dehydrogenase
62	 61.24	0	51015..51512	-	165	114798905	-	HNE_0062	-	YbaK/prolyl-tRNA synthetase domain-containing protein
63	 60.00	0	51575..52309	+	244	114798190	-	HNE_0063	-	hypothetical protein
64	 72.73	+2	52373..52735	-	120	114797533	hisE	HNE_0064	-	phosphoribosyl-ATP diphosphatase
65	 63.38	0	52868..53689	+	273	114798522	-	HNE_0065	-	enoyl-CoA hydratase
66	 67.98	+1	53725..54483	-	252	114797557	hisF	HNE_0066	-	imidazoleglycerol phosphate synthase, cyclase subunit
67	 68.75	+1	54635..54826	+	63	114798515	-	HNE_0067	-	hypothetical protein
68	 64.70	0	54933..55694	+	253	114799626	-	HNE_0068	-	putative diguanylate cyclase
69	 50.95	-2	55978..56187	+	69	114799723	-	HNE_0069	-	hypothetical protein
70	 67.77	+1	56214..56939	-	241	114797166	hisA	HNE_0070	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
71	 67.93	+1	56936..57568	-	210	114798251	hisH	HNE_0071	-	imidazoleglycerol phosphate synthase, glutamine amidotransferase subunit
72	 62.16	0	57668..58975	+	435	114800187	-	HNE_0072	-	putative transporter
73	 60.29	0	58991..59617	-	208	114799970	hisB	HNE_0073	-	imidazoleglycerol-phosphate dehydratase
74	 63.03	0	59697..61481	+	594	114799436	-	HNE_0074	-	putative diguanylate cyclase
75	 63.39	0	61463..61981	-	172	114798620	-	HNE_0075	-	putative acetyltransferase
76	 61.38	0	61978..62412	-	144	114800214	-	HNE_0076	-	hypothetical protein
77	 62.00	0	62417..62845	-	142	114797338	-	HNE_0077	-	hypothetical protein
78	 63.92	0	62935..63990	-	351	114798208	mclA	HNE_0078	-	malyl-CoA lyase
79	 56.22	-1	64086..64286	+	66	114797180	-	HNE_0079	-	hypothetical protein
80	 64.41	0	64291..65220	-	309	114797932	xerD	HNE_0080	-	tyrosine recombinase XerD
81	 62.03	0	65507..66067	+	186	114800012	aroK	HNE_0081	-	shikimate kinase
82	 64.17	0	66064..67185	+	373	114797725	aroB	HNE_0082	-	3-dehydroquinate synthase
83	 61.33	0	67214..68488	+	424	114798726	-	HNE_0083	-	CBS/transporter associated domain-containing protein
84	 60.99	0	68495..68776	-	93	114799844	-	HNE_0084	-	BolA family protein
85	 66.51	+1	68808..69431	+	207	114797765	-	HNE_0085	-	DnaJ domain-containing protein
86	 59.57	0	69846..70310	+	154	114798718	-	HNE_0086	-	spore coat family protein
87	 63.14	0	70322..71002	+	226	114799312	-	HNE_0087	-	hypothetical protein
88	 63.69	0	71056..73308	+	750	114800318	-	HNE_0088	-	fimbrial usher protein
89	 59.48	0	73309..73767	+	152	114797879	-	HNE_0089	-	putative lipoprotein
90	 62.32	0	73871..74860	+	329	114798702	-	HNE_0090	-	putative NADH-quinone oxidoreductase
91	 64.34	0	74864..75721	-	285	114799349	-	HNE_0091	-	putative undecaprenol kinase
92	 61.96	0	75961..77406	+	481	114800319	gltD	HNE_0092	-	putative oxidoreductase
93	 61.05	0	77412..81953	+	1513	114798288	gltB	HNE_0093	-	glutamate synthase, large subunit
94	 61.15	0	82002..82889	-	295	114798674	-	HNE_0094	-	putative lipoprotein
95	 58.33	-1	83174..84337	+	387	114799939	-	HNE_0095	-	aminotransferase, classes I and II
96	 60.85	0	84385..85932	-	515	114797697	-	HNE_0096	-	carboxyl transferase domain-containing protein
97	 58.82	0	86041..86346	+	101	114797960	-	HNE_0097	-	SCP-2 sterol transfer family protein
98	 60.17	0	86433..87386	+	317	114799139	-	HNE_0098	-	alpha/beta fold family hydrolase
99	 60.77	0	87421..88878	+	485	114797267	baiB	HNE_0099	-	bile acid-coenzyme A ligase
100	 62.09	0	88934..89938	+	334	114797977	-	HNE_0100	-	alcohol dehydrogenase, class III
101	 58.20	-1	89975..91498	-	507	114798776	-	HNE_0101	-	amino acid carrier protein
102	 59.35	0	91544..91666	-	40	114799575	-	HNE_0102	-	hypothetical protein
103	 61.11	0	91688..93037	+	449	114799640	-	HNE_0103	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
104	 62.33	0	93076..94020	+	314	114800486	-	HNE_0104	-	PhoH family protein
105	 55.19	-1	94031..94483	+	150	114798379	-	HNE_0105	-	hypothetical protein
106	 61.44	0	94489..95349	+	286	114798310	-	HNE_0106	-	CBS/transporter associated domain-containing protein
107	 61.44	0	95356..96999	+	547	114800455	lnt	HNE_0107	-	apolipoprotein N-acyltransferase
108	 57.53	-1	97041..97478	+	145	114799525	-	HNE_0108	-	DNA-binding protein
109	 61.36	0	97510..98169	+	219	114798099	trmB	HNE_0109	-	tRNA (guanine-N(7))-methyltransferase
110	 52.38	-2	98355..98564	+	69	114797127	-	HNE_0110	-	cold shock DNA-binding protein
111	 61.83	0	98773..99372	+	199	114800120	-	HNE_0111	-	hypothetical protein
112	 61.10	0	99369..101147	+	592	114799070	nusA	HNE_0112	-	transcription termination factor NusA
113	 61.57	0	101122..101808	+	228	114798650	-	HNE_0113	-	hypothetical protein
114	 62.72	0	101864..104425	+	853	114797688	infB	HNE_0114	-	translation initiation factor IF-2
115	 62.75	0	104435..104842	+	135	114799473	rbfA	HNE_0115	-	ribosome-binding factor A
116	 62.01	0	105005..105562	+	185	114800142	-	HNE_0116	-	hypothetical protein
117	 64.54	0	105695..106636	+	313	114799976	truB	HNE_0117	-	tRNA pseudouridine synthase B
118	 66.67	+1	106637..106873	-	78	114797236	-	HNE_0118	-	hypothetical protein
119	 61.86	0	107521..108228	-	235	114797682	-	HNE_0119	-	putative lipoprotein
120	 62.28	0	108400..108900	+	166	114800218	msrB1	HNE_0120	-	methionine-R-sulfoxide reductase
121	 67.94	+1	108966..109358	-	130	114798277	-	HNE_0121	-	hypothetical protein
122	 61.90	0	109355..109690	-	111	114797689	-	HNE_0122	-	hypothetical protein
123	 64.47	0	109703..110338	-	211	114797302	-	HNE_0123	-	hypothetical protein
124	 69.89	+2	110388..110759	-	123	114798871	-	HNE_0124	-	hypothetical protein
125	 61.94	0	110804..111586	-	260	114797825	bdhA	HNE_0125	-	3-hydroxybutyrate dehydrogenase
126	 61.38	0	111682..112116	+	144	114800450	-	HNE_0126	-	hypothetical protein
127	 66.24	+1	112243..112947	+	234	114799432	-	HNE_0127	-	hypothetical protein
128	 66.67	+1	112944..113813	+	289	114799810	pyrF	HNE_0128	-	orotidine 5'-phosphate decarboxylase
129	 63.93	0	113966..116119	+	717	114797244	adhA	HNE_0129	-	alcohol dehydrogenase (acceptor)
130	 65.00	0	116258..116797	+	179	114798229	-	HNE_0130	-	hypothetical protein
131	 59.39	0	116868..117692	+	274	114797508	-	HNE_0131	-	hypothetical protein
132	 62.34	0	117676..118368	-	230	114800131	-	HNE_0132	-	glutathione S-transferase
133	 65.99	+1	118365..118661	-	98	114797485	-	HNE_0133	-	hypothetical protein
134	 56.92	-1	118811..119518	+	235	114798071	-	HNE_0134	-	TetR family transcriptional regulator
135	 64.67	0	119583..119732	+	49	114799071	-	HNE_0135	-	hypothetical protein
136	 68.49	+1	119883..120980	-	365	114797789	gcp	HNE_0136	-	O-sialoglycoprotein endopeptidase
137	 68.02	+1	121016..121756	-	246	114798778	-	HNE_0137	-	YceI family protein
138	 58.80	0	122241..122672	+	143	114799309	-	HNE_0138	-	hypothetical protein
139	 61.43	0	122692..124506	-	604	114800355	lepA	HNE_0139	-	GTP-binding protein LepA
140	 60.80	0	124623..125474	+	283	114797303	-	HNE_0140	-	hypothetical protein
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.