IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
821	 62.42	0	849439..851064	+	541	114798331	alkK	HNE_0828	-	putative acyl-CoA synthetase
822	 64.94	0	851073..851420	+	115	114799627	-	HNE_0829	-	hypothetical protein
823	 68.65	+1	851485..852393	+	302	114799715	-	HNE_0830	-	hypothetical protein
824	 64.98	0	852397..852870	-	157	114799159	-	HNE_0831	-	putative lipoprotein
825	 64.36	0	853007..853483	-	158	114798113	-	HNE_0832	-	thioesterase family protein
826	 62.37	0	853480..853851	-	123	114798492	csaA	HNE_0833	-	export-related chaperone CsaA
827	 63.02	0	853851..854618	-	255	114800132	-	HNE_0834	-	short chain dehydrogenase/reductase family oxidoreductase
828	 71.32	+2	854792..855199	+	135	114800502	-	HNE_0835	-	hypothetical protein
829	 63.17	0	855275..857278	+	667	114799503	-	HNE_0836	-	TonB-dependent receptor
830	 63.43	0	857385..857879	+	164	114798093	-	HNE_0837	-	YCII domain-containing protein
831	 64.08	0	857889..859553	-	554	114797174	-	HNE_0838	-	hypothetical protein
832	 61.75	0	859665..860498	+	277	114798406	-	HNE_0839	-	fumarylacetoacetate hydrolase family protein
833	 62.98	0	860733..862088	+	451	114797619	-	HNE_0840	-	EAL domain-containing protein
834	 69.11	+1	862167..862739	+	190	114799049	-	HNE_0841	-	putative lipoprotein
835	 66.31	+1	862787..863638	+	283	114798257	-	HNE_0842	-	HAD family hydrolase
836	 61.81	0	863744..864175	+	143	114797881	-	HNE_0843	-	MaoC domain-containing protein
837	 67.10	+1	864175..865101	+	308	114799780	ribF	HNE_0844	-	riboflavin biosynthesis protein RibF
838	 61.20	0	865245..865976	-	243	114799511	-	HNE_0846	-	hypothetical protein
839	 59.96	0	865272..865823	+	183	114798708	-	HNE_0845	-	hypothetical protein
840	 60.86	0	866096..866560	+	154	114800046	-	HNE_0847	-	hypothetical protein
841	 60.16	0	866600..866722	-	40	114800154	-	HNE_0848	-	hypothetical protein
842	 63.54	0	866764..869805	+	1013	114797776	ileS	HNE_0849	-	isoleucyl-tRNA synthetase
843	 61.27	0	869897..870433	+	178	114798762	lspA1	HNE_0850	-	signal peptidase II
844	 68.67	+1	870468..870965	+	165	114799408	-	HNE_0851	-	putative lipoprotein
845	 63.28	0	871036..872394	+	452	114800347	-	HNE_0852	-	insulinase family protein
846	 65.32	0	872394..873809	+	471	114797798	-	HNE_0853	-	M16 family peptidase
847	 67.72	+1	874144..875094	-	316	114798794	-	HNE_0854	-	hypothetical protein
848	 62.25	0	875094..875705	-	203	114799013	-	HNE_0855	-	HD domain-containing protein
849	 56.67	-1	875913..876062	+	49	114799853	-	HNE_0856	-	hypothetical protein
850	 61.05	0	876077..877198	-	373	114797280	-	HNE_0857	-	3-oxoacyl-(acyl carrier protein) synthase III
851	 63.80	0	877327..877605	-	92	114798297	-	HNE_0858	-	hypothetical protein
852	 62.25	0	877602..877805	-	67	114797522	-	HNE_0859	-	putative lipoprotein
853	 59.79	0	877802..878383	-	193	114798473	tag	HNE_0860	-	DNA-3-methyladenine glycosylase I
854	 64.58	0	878376..879191	-	271	114798165	-	HNE_0861	-	putative aminomethyltransferase
855	 64.35	0	879289..880629	+	446	114799203	-	HNE_0862	-	dihydroorotase
856	 60.88	0	880658..882073	+	471	114799838	-	HNE_0863	-	hypothetical protein
857	 64.15	0	882196..884064	+	622	114797749	fcs2	HNE_0864	-	feruloyl-CoA synthase
858	 68.09	+1	884345..885892	+	515	114798777	-	HNE_0865	-	hypothetical protein
859	 62.51	0	885959..888049	-	696	114799589	-	HNE_0866	-	S9A/B/C family peptidase
860	 66.67	+1	888225..888878	-	217	114800358	-	HNE_0867	-	hypothetical protein
861	 61.72	0	888863..889246	-	127	114799997	-	HNE_0868	-	hypothetical protein
862	 61.90	0	889593..891374	+	593	114798532	-	HNE_0869	-	ribonucleotide-diphosphate reductase subunit alpha
863	 64.47	0	891722..892585	+	287	114797589	-	HNE_0870	-	hypothetical protein
864	 60.53	0	892661..893230	-	189	114800400	-	HNE_0871	-	hypothetical protein
865	 60.40	0	893387..893737	+	116	114799587	rpoZ	HNE_0872	-	DNA-directed RNA polymerase subunit omega
866	 62.48	0	893746..896013	+	755	114798559	-	HNE_0873	-	RelA/SpoT family protein
867	 63.23	0	896003..896584	+	193	114797568	pyrE	HNE_0874	-	orotate phosphoribosyltransferase
868	 66.53	+1	896584..897327	+	247	114799252	pdxJ	HNE_0875	-	pyridoxal phosphate biosynthetic protein PdxJ
869	 66.43	+1	897324..897737	+	137	114798027	-	HNE_0876	-	holo-(acyl-carrier-protein) synthase
870	 62.98	0	897785..898489	+	234	114797101	rnc	HNE_0877	-	ribonuclease III
871	 63.61	0	898486..899433	+	315	114799800	era	HNE_0878	-	GTP-binding protein Era
872	 67.62	+1	899440..900171	+	243	114799258	recO	HNE_0879	-	DNA repair protein RecO
873	 62.88	0	900178..900864	-	228	114800285	-	HNE_0880	-	extensin domain-containing protein
874	 62.42	0	900998..903232	+	744	114797721	parC	HNE_0881	-	DNA topoisomerase IV subunit A
875	 62.80	0	903504..904253	-	249	114798782	-	HNE_0882	-	Sir2 family transcriptional regulator
876	 61.57	0	904287..904757	-	156	114798046	-	HNE_0883	-	hypothetical protein
877	 63.39	0	904811..905146	+	111	114799505	-	HNE_0884	-	ArsR family transcriptional regulator
878	 65.81	+1	905143..905844	-	233	114800041	-	HNE_0885	-	hypothetical protein
879	 61.52	0	905991..906554	+	187	114797085	-	HNE_0886	-	LemA family protein
880	 62.99	0	906615..906968	+	117	114798880	-	HNE_0887	-	putative lipoprotein
881	 62.58	0	907043..907678	+	211	114799958	-	HNE_0888	-	putative lipoprotein
882	 64.47	0	907685..908821	-	378	114798381	-	HNE_0889	-	aminotransferase, classes I and II
883	 65.03	0	908840..910423	-	527	114797782	-	HNE_0890	-	TRAP dicarboxylate transporter, DctM subunit
884	 62.65	0	910413..911084	-	223	114798395	-	HNE_0891	-	TRAP transporter, DctQ-like membrane protein
885	 64.05	0	911103..912212	-	369	114797611	-	HNE_0892	-	solute-binding family 7 protein
886	 62.98	0	912283..913041	-	252	114799991	ate	HNE_0893	-	arginyl-tRNA-protein transferase
887	 62.70	0	913147..913827	-	226	114799250	-	HNE_0894	-	putative chemotaxis protein MotB
888	 66.78	+1	913961..914827	+	288	114797994	-	HNE_0895	-	3-hydroxyisobutyrate dehydrogenase family protein
889	 64.20	0	914827..915840	+	337	114797056	-	HNE_0896	-	hypothetical protein
890	 63.24	0	916005..916442	+	145	114797691	-	HNE_0897	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
891	 65.16	0	916471..917466	-	331	114800380	hemB	HNE_0898	-	delta-aminolevulinic acid dehydratase
892	 63.20	0	917498..918103	-	201	114799089	-	HNE_0899	-	acetyltransferase
893	 63.25	0	918103..919242	+	379	114800043	acad8	HNE_0900	-	acyl-CoA dehydrogenase
894	 62.54	0	919253..920101	-	282	114797103	-	HNE_0901	-	short chain dehydrogenase/reductase family oxidoreductase
895	 62.54	0	920285..921253	+	322	114798042	-	HNE_0902	-	glycerophosphoryl diester phosphodiesterase family protein
896	 62.05	0	921326..921715	+	129	114799562	-	HNE_0903	-	globin domain-containing protein
897	 65.59	0	921754..922308	+	184	114800490	-	HNE_0904	-	nickel-dependent hydrogenase, b-type cytochrome subunit
898	 60.48	0	922391..923230	+	279	114797498	-	HNE_0905	-	TauD/TfdA family dioxygenase
899	 56.09	-1	923259..923693	-	144	114798468	-	HNE_0906	-	hypothetical protein
900	 63.90	0	923676..924758	+	360	114799454	-	HNE_0907	-	enoyl-CoA hydratase/isomerase family protein
901	 56.52	-1	924794..925138	+	114	114800500	-	HNE_0908	-	SMR family multidrug efflux pump
902	 58.97	0	925389..925895	+	168	114797129	-	HNE_0909	-	putative transcriptional regulatory protein
903	 65.88	+1	926054..926563	+	169	114798741	-	HNE_0910	-	hypothetical protein
904	 64.11	0	926726..927391	+	221	114800226	-	HNE_0911	-	hypothetical protein
905	 68.64	+1	927397..927954	-	185	114797637	-	HNE_0912	-	cytochrome c family protein
906	 67.87	+1	928151..930055	+	634	114799039	mutL	HNE_0913	-	DNA mismatch repair protein
907	 69.15	+1	930139..931308	+	389	114800070	-	HNE_0914	-	beta-lactamase
908	 60.60	0	931305..932672	-	455	114800068	-	HNE_0915	-	endonuclease/exonuclease/phosphatase family protein
909	 65.88	+1	932772..934175	-	467	114797272	-	HNE_0916	-	oxidoreductase, FAD-binding
910	 66.04	+1	934529..934849	+	106	114798678	-	HNE_0917	-	hypothetical protein
911	 69.71	+2	934938..935561	-	207	114799502	-	HNE_0918	-	putative FMN-binding protein
912	 63.05	0	935626..936954	-	442	114799890	-	HNE_0919	-	beta-lactamase family protein
913	 66.67	+1	937061..938488	-	475	114797378	xseA	HNE_0920	-	exodeoxyribonuclease VII, large subunit
914	 64.19	0	938709..939557	+	282	114798268	-	HNE_0921	-	hypothetical protein
915	 64.58	0	939626..940918	+	430	114799064	purD	HNE_0922	-	phosphoribosylamine--glycine ligase
916	 65.16	0	940915..941976	-	353	114799375	-	HNE_0923	-	zinc-binding dehydrogenase family oxidoreductase
917	 64.39	0	942005..942793	-	262	114800243	-	HNE_0924	-	short chain dehydrogenase/reductase family oxidoreductase
918	 62.37	0	942756..943454	+	232	114798572	-	HNE_0926	-	hypothetical protein
919	 63.31	0	942807..943343	-	178	114797832	-	HNE_0925	-	hypothetical protein
920	 65.31	0	943521..944183	+	220	114797924	-	HNE_0927	-	TetR family transcriptional regulator
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.