IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
770	 61.34	0	786610..788541	-	643	114799988	cysNC	HNE_0776	-	sulfate adenylyltransferase, large subunit/adenylylsulfate kinase
771	 62.51	0	788541..789527	-	328	114799213	cysD	HNE_0777	-	sulfate adenylyltransferase subunit 2
772	 63.49	0	789693..791519	+	608	114800082	glmS	HNE_0778	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
773	 54.30	-2	791573..792154	+	193	114799033	rfbC	HNE_0779	-	dTDP-4-dehydrorhamnose 3,5-epimerase
774	 61.84	0	792151..793041	+	296	114798649	rfbD	HNE_0780	-	dTDP-4-dehydrorhamnose reductase
775	 56.59	-1	793156..793989	+	277	114797221	-	HNE_0781	-	hypothetical protein
776	 57.13	-1	793956..795161	-	401	114797227	-	HNE_0782	-	N-acylglucosamine 2-epimerase
777	 62.25	0	795428..796582	+	384	114799993	-	HNE_0783	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
778	 50.23	-2	796755..796973	-	72	114800368	-	HNE_0784	-	DNA-binding protein
779	 61.73	0	797474..798142	+	222	114797997	-	HNE_0785	-	ECF subfamily RNA polymerase sigma factor
780	 62.77	0	798390..799571	-	393	114798411	metK	HNE_0786	-	S-adenosylmethionine synthetase
781	 62.35	0	799594..800451	-	285	114797552	purU	HNE_0787	-	formyltetrahydrofolate deformylase
782	 61.42	0	800471..801880	-	469	114798407	ahcY	HNE_0788	-	S-adenosyl-L-homocysteine hydrolase
783	 62.79	0	801993..802868	-	291	114797641	rfbA	HNE_0789	-	glucose-1-phosphate thymidylyltransferase
784	 60.56	0	802980..804077	-	365	114799940	rfbB	HNE_0790	-	dTDP-glucose 4,6-dehydratase
785	 56.74	-1	804078..804470	-	130	114798886	-	HNE_0791	-	putative dTDP-4-dehydrorhamnose 3,5-epimerase
786	 56.88	-1	804821..806005	+	394	114798947	-	HNE_0792	-	putative glycosyl transferase
787	 54.91	-1	806469..807446	+	325	114798249	gmd	HNE_0793	-	GDP-mannose 4,6-dehydratase
788	 56.31	-1	807479..808453	+	324	114797456	-	HNE_0794	-	putative GDP-6-deoxy-D-lyxo-4-hexulose reductase
789	 52.58	-2	808521..809315	+	264	114800250	-	HNE_0795	-	lipopolysaccharide ABC transporter, permease protein
790	 50.64	-2	809312..810565	+	417	114799437	-	HNE_0796	-	lipopolysaccharide ABC transporter, ATP-binding protein
791	 51.93	-2	810562..811959	+	465	114798665	-	HNE_0797	-	FkbM family methyltransferase
792	 50.48	-2	812047..814221	-	724	114797898	-	HNE_0798	-	hypothetical protein
793	 49.40	-2	814238..815158	-	306	114799784	-	HNE_0799	-	hypothetical protein
794	 51.64	-2	815165..815803	-	212	114798982	-	HNE_0800	-	3-demethylubiquinone-9 3-methyltransferase domain-containing protein
795	 46.90	-2	815822..816772	-	316	114798217	-	HNE_0801	-	glycosyl transferase, group 2 family protein
796	 46.93	-2	818133..820280	+	715	114799742	-	HNE_0803	-	hypothetical protein
797	 52.22	-2	820414..824136	-	1240	114799110	-	HNE_0804	-	putative mannosyltransferase
798	 56.99	-1	824692..825735	-	347	114798009	-	HNE_0805	-	glycosyl transferase, group 2 family protein
799	 60.33	0	825754..826605	-	283	114797175	kdsA	HNE_0806	-	2-dehydro-3-deoxyphosphooctonate aldolase
800	 59.35	0	827102..827566	+	154	114800116	-	HNE_0807	-	hypothetical protein
801	 57.18	-1	827714..828103	-	129	114799321	-	HNE_0808	-	hypothetical protein
802	 60.03	0	828265..829605	+	446	114798494	-	HNE_0809	-	acyl-CoA dehydrogenase family protein
803	 62.56	0	829662..831026	-	454	114800287	tnaA	HNE_0810	-	tryptophanase
804	 60.44	0	831075..833033	+	652	114799965	-	HNE_0811	-	hypothetical protein
805	 62.08	0	833040..834020	-	326	114798051	-	HNE_0812	-	oxidoreductase, NAD-binding
806	 67.14	+1	834208..834633	+	141	114797297	-	HNE_0813	-	hypothetical protein
807	 62.37	0	834705..834983	+	92	114800053	-	HNE_0814	-	hypothetical protein
808	 60.03	0	834989..838228	-	1079	114800248	-	HNE_0815	-	AcrB/AcrD/AcrF family protein
809	 62.29	0	838225..839343	-	372	114799367	-	HNE_0816	-	RND family efflux transporter MFP subunit
810	 65.40	0	839464..840963	-	499	114797830	-	HNE_0817	-	putative 6-aminohexanoate-cyclic-dimer hydrolase
811	 63.87	0	841126..841875	+	249	114798580	-	HNE_0818	-	hemolysin A
812	 65.10	0	841876..842451	-	191	114799835	-	HNE_0819	-	putative lipoprotein
813	 64.56	0	842544..843443	-	299	114799517	-	HNE_0820	-	hypothetical protein
814	 62.84	0	843453..844550	+	365	114798952	-	HNE_0821	-	hypothetical protein
815	 58.48	0	844701..845201	+	166	114799703	-	HNE_0822	-	hypothetical protein
816	 65.20	0	845285..846376	-	363	114797430	aroC	HNE_0823	-	chorismate synthase
817	 66.36	+1	846461..847120	+	219	114798246	pdxH	HNE_0824	-	pyridoxamine 5'-phosphate oxidase
818	 65.11	0	847137..847586	-	149	114798862	-	HNE_0825	-	hypothetical protein
819	 61.20	0	847870..848253	+	127	114799860	-	HNE_0826	-	hypothetical protein
820	 65.61	0	848319..849167	-	282	114797643	-	HNE_0827	-	glycerophosphoryl diester phosphodiesterase family protein
821	 62.42	0	849439..851064	+	541	114798331	alkK	HNE_0828	-	putative acyl-CoA synthetase
822	 64.94	0	851073..851420	+	115	114799627	-	HNE_0829	-	hypothetical protein
823	 68.65	+1	851485..852393	+	302	114799715	-	HNE_0830	-	hypothetical protein
824	 64.98	0	852397..852870	-	157	114799159	-	HNE_0831	-	putative lipoprotein
825	 64.36	0	853007..853483	-	158	114798113	-	HNE_0832	-	thioesterase family protein
826	 62.37	0	853480..853851	-	123	114798492	csaA	HNE_0833	-	export-related chaperone CsaA
827	 63.02	0	853851..854618	-	255	114800132	-	HNE_0834	-	short chain dehydrogenase/reductase family oxidoreductase
828	 71.32	+2	854792..855199	+	135	114800502	-	HNE_0835	-	hypothetical protein
829	 63.17	0	855275..857278	+	667	114799503	-	HNE_0836	-	TonB-dependent receptor
830	 63.43	0	857385..857879	+	164	114798093	-	HNE_0837	-	YCII domain-containing protein
831	 64.08	0	857889..859553	-	554	114797174	-	HNE_0838	-	hypothetical protein
832	 61.75	0	859665..860498	+	277	114798406	-	HNE_0839	-	fumarylacetoacetate hydrolase family protein
833	 62.98	0	860733..862088	+	451	114797619	-	HNE_0840	-	EAL domain-containing protein
834	 69.11	+1	862167..862739	+	190	114799049	-	HNE_0841	-	putative lipoprotein
835	 66.31	+1	862787..863638	+	283	114798257	-	HNE_0842	-	HAD family hydrolase
836	 61.81	0	863744..864175	+	143	114797881	-	HNE_0843	-	MaoC domain-containing protein
837	 67.10	+1	864175..865101	+	308	114799780	ribF	HNE_0844	-	riboflavin biosynthesis protein RibF
838	 61.20	0	865245..865976	-	243	114799511	-	HNE_0846	-	hypothetical protein
839	 59.96	0	865272..865823	+	183	114798708	-	HNE_0845	-	hypothetical protein
840	 60.86	0	866096..866560	+	154	114800046	-	HNE_0847	-	hypothetical protein
841	 60.16	0	866600..866722	-	40	114800154	-	HNE_0848	-	hypothetical protein
842	 63.54	0	866764..869805	+	1013	114797776	ileS	HNE_0849	-	isoleucyl-tRNA synthetase
843	 61.27	0	869897..870433	+	178	114798762	lspA1	HNE_0850	-	signal peptidase II
844	 68.67	+1	870468..870965	+	165	114799408	-	HNE_0851	-	putative lipoprotein
845	 63.28	0	871036..872394	+	452	114800347	-	HNE_0852	-	insulinase family protein
846	 65.32	0	872394..873809	+	471	114797798	-	HNE_0853	-	M16 family peptidase
847	 67.72	+1	874144..875094	-	316	114798794	-	HNE_0854	-	hypothetical protein
848	 62.25	0	875094..875705	-	203	114799013	-	HNE_0855	-	HD domain-containing protein
849	 56.67	-1	875913..876062	+	49	114799853	-	HNE_0856	-	hypothetical protein
850	 61.05	0	876077..877198	-	373	114797280	-	HNE_0857	-	3-oxoacyl-(acyl carrier protein) synthase III
851	 63.80	0	877327..877605	-	92	114798297	-	HNE_0858	-	hypothetical protein
852	 62.25	0	877602..877805	-	67	114797522	-	HNE_0859	-	putative lipoprotein
853	 59.79	0	877802..878383	-	193	114798473	tag	HNE_0860	-	DNA-3-methyladenine glycosylase I
854	 64.58	0	878376..879191	-	271	114798165	-	HNE_0861	-	putative aminomethyltransferase
855	 64.35	0	879289..880629	+	446	114799203	-	HNE_0862	-	dihydroorotase
856	 60.88	0	880658..882073	+	471	114799838	-	HNE_0863	-	hypothetical protein
857	 64.15	0	882196..884064	+	622	114797749	fcs2	HNE_0864	-	feruloyl-CoA synthase
858	 68.09	+1	884345..885892	+	515	114798777	-	HNE_0865	-	hypothetical protein
859	 62.51	0	885959..888049	-	696	114799589	-	HNE_0866	-	S9A/B/C family peptidase
860	 66.67	+1	888225..888878	-	217	114800358	-	HNE_0867	-	hypothetical protein
861	 61.72	0	888863..889246	-	127	114799997	-	HNE_0868	-	hypothetical protein
862	 61.90	0	889593..891374	+	593	114798532	-	HNE_0869	-	ribonucleotide-diphosphate reductase subunit alpha
863	 64.47	0	891722..892585	+	287	114797589	-	HNE_0870	-	hypothetical protein
864	 60.53	0	892661..893230	-	189	114800400	-	HNE_0871	-	hypothetical protein
865	 60.40	0	893387..893737	+	116	114799587	rpoZ	HNE_0872	-	DNA-directed RNA polymerase subunit omega
866	 62.48	0	893746..896013	+	755	114798559	-	HNE_0873	-	RelA/SpoT family protein
867	 63.23	0	896003..896584	+	193	114797568	pyrE	HNE_0874	-	orotate phosphoribosyltransferase
868	 66.53	+1	896584..897327	+	247	114799252	pdxJ	HNE_0875	-	pyridoxal phosphate biosynthetic protein PdxJ
869	 66.43	+1	897324..897737	+	137	114798027	-	HNE_0876	-	holo-(acyl-carrier-protein) synthase
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.