IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
681	 63.54	0	694206..696923	+	905	114800443	ppdK	HNE_0686	-	pyruvate phosphate dikinase
682	 65.77	+1	697290..698519	+	409	114797673	-	HNE_0687	-	hydrolase
683	 64.20	0	698604..699413	-	269	114798485	-	HNE_0688	-	short chain dehydrogenase
684	 64.22	0	699469..700326	-	285	114797685	nadC	HNE_0689	-	nicotinate-nucleotide pyrophosphorylase
685	 69.02	+1	700323..701891	-	522	114800426	nadB	HNE_0690	-	L-aspartate oxidase
686	 61.88	0	701875..702354	-	159	114799594	-	HNE_0691	-	hypothetical protein
687	 61.23	0	702423..703433	-	336	114798115	nadA	HNE_0692	-	quinolinate synthetase complex, A subunit
688	 62.38	0	703802..705178	-	458	114799423	-	HNE_0693	-	hypothetical protein
689	 63.13	0	705219..706517	-	432	114799798	-	HNE_0694	-	amidohydrolase, carboxypeptidase-type
690	 63.81	0	707019..708629	-	536	114797080	-	HNE_0695	-	putative ATP-dependent RNA helicase RhlE
691	 60.03	0	708830..709492	-	220	114797796	sodB	HNE_0696	-	superoxide dismutase, Fe
692	 63.03	0	709495..710154	+	219	114799019	-	HNE_0697	-	hypothetical protein
693	 67.97	+1	710286..710822	+	178	114797576	-	HNE_0698	-	putative lipoprotein
694	 64.83	0	710832..711809	-	325	114798797	-	HNE_0699	-	lipid A biosynthesis acyltransferase
695	 67.77	+1	711806..712804	-	332	114799558	lpxK	HNE_0700	-	tetraacyldisaccharide 4'-kinase
696	 68.60	+1	712801..714090	-	429	114799880	kdtA	HNE_0701	-	3-deoxy-D-manno-octulosonic-acid transferase
697	 65.90	+1	714087..714866	-	259	114797159	-	HNE_0702	-	hypothetical protein
698	 63.17	0	715690..716403	-	237	114797471	gph	HNE_0704	-	phosphoglycolate phosphatase
699	 65.73	0	716484..717869	+	461	114797715	glmU	HNE_0705	-	UDP-N-acetylglucosamine pyrophosphorylase
700	 62.59	0	717870..718580	+	236	114798972	rpiA	HNE_0706	-	ribose 5-phosphate isomerase A
701	 61.98	0	718635..720020	+	461	114799468	gor	HNE_0707	-	glutathione-disulfide reductase
702	 63.23	0	720055..721362	-	435	114800256	-	HNE_0708	-	nucleotide binding protein
703	 63.62	0	721515..722891	+	458	114797431	-	HNE_0709	-	3-deoxy-7-phosphoheptulonate synthase
704	 65.27	0	722960..723676	+	238	114798192	-	HNE_0710	-	CAAX amino protease
705	 64.90	0	723851..725266	+	471	114798693	-	HNE_0711	-	MATE efflux family protein
706	 57.30	-1	725298..725564	-	88	114799692	hup1	HNE_0712	-	DNA-binding protein HU
707	 61.29	0	725664..726575	-	303	114800309	-	HNE_0713	-	hypothetical protein
708	 61.68	0	726579..727601	-	340	114799480	-	HNE_0714	-	L4BD family NADP-dependent oxidoreductase
709	 64.83	0	727824..728750	+	308	114798808	-	HNE_0715	-	Gfo/Idh/MocA family oxidoreductase
710	 63.88	0	728752..729468	-	238	114800463	-	HNE_0716	-	short chain dehydrogenase/reductase family oxidoreductase
711	 61.57	0	729490..730941	-	483	114797301	purF	HNE_0717	-	amidophosphoribosyltransferase
712	 66.08	+1	731057..731905	-	282	114798030	-	HNE_0718	-	hypothetical protein
713	 57.39	-1	731970..732497	-	175	114798180	-	HNE_0719	-	CvpA family protein
714	 67.03	+1	732490..733872	-	460	114799161	radA	HNE_0720	-	DNA repair protein RadA
715	 61.62	0	733871..734464	+	197	114797652	-	HNE_0721	-	hypothetical protein
716	 67.25	+1	734501..735694	+	397	114798488	-	HNE_0722	-	pyridine nucleotide-disulfide oxidoreductase
717	 61.83	0	736557..737321	-	254	114798614	-	HNE_0723	-	ABC transporter, ATP-binding protein
718	 65.01	0	737318..738103	-	261	114798102	-	HNE_0724	-	hypothetical protein
719	 62.78	0	738110..739165	-	351	114797948	alr1	HNE_0725	-	alanine racemase
720	 62.73	0	739198..740850	-	550	114797393	-	HNE_0726	-	major facilitator family protein
721	 60.19	0	740887..741318	+	143	114799912	-	HNE_0727	-	hypothetical protein
722	 61.42	0	741404..742585	+	393	114799373	-	HNE_0728	-	hypothetical protein
723	 57.82	-1	742679..743164	+	161	114799200	-	HNE_0729	-	MnhE/PhaE family monovalent cation/proton antiporter
724	 60.27	0	743164..743460	+	98	114799983	-	HNE_0730	-	MnhF/PhaF family monovalent cation/proton antiporter
725	 62.06	0	743462..743830	+	122	114797245	-	HNE_0731	-	MnhG/PhaG family monovalent cation/proton antiporter
726	 60.68	0	743827..744444	+	205	114797993	-	HNE_0732	-	hypothetical protein
727	 59.82	0	744444..744896	+	150	114799795	-	HNE_0733	-	putative monovalent cation/H+ antiporter subunit B
728	 60.68	0	744901..745401	+	166	114799114	-	HNE_0734	-	putative NADH-quinone oxidoreductase
729	 61.39	0	745440..746936	+	498	114800322	-	HNE_0735	-	putative monovalent cation/H+ antiporter subunit D
730	 61.37	0	746933..748441	+	502	114797124	-	HNE_0736	-	putative NADH-quinone oxidoreductase
731	 60.59	0	748438..748881	+	147	114798330	-	HNE_0737	-	hypothetical protein
732	 60.47	0	748881..750656	+	591	114798610	-	HNE_0738	-	putative monovalent cation/H+ antiporter subunit D
733	 51.21	-2	750827..751240	+	137	114799831	-	HNE_0739	-	Ros/MucR family transcriptional regulator
734	 62.87	0	751388..751888	+	166	114797666	-	HNE_0740	-	hypothetical protein
735	 60.87	0	751990..752334	+	114	114799179	-	HNE_0741	-	DnaA domain-containing protein
736	 65.50	0	752331..753014	+	227	114800191	-	HNE_0742	-	hypothetical protein
737	 64.79	0	752667..752933	-	88	114800096	-	HNE_0743	-	hypothetical protein
738	 60.24	0	753021..753440	-	139	114797908	-	HNE_0744	-	SufE family Fe-S metabolism protein
739	 61.16	0	753527..754525	-	332	114797262	-	HNE_0745	-	hypothetical protein
740	 66.36	+1	754650..756269	+	539	114798414	-	HNE_0746	-	putative sensor histidine kinase DivJ
741	 57.69	-1	756361..756672	+	103	114799583	-	HNE_0747	-	putative lipoprotein
742	 64.66	0	756703..757050	+	115	114797676	-	HNE_0748	-	hypothetical protein
743	 62.47	0	757148..757552	+	134	114798927	-	HNE_0749	-	putative lipoprotein
744	 69.47	+2	757679..757999	+	106	114799697	-	HNE_0750	-	hypothetical protein
745	 56.02	-1	758071..758427	+	118	114798497	-	HNE_0751	-	hypothetical protein
746	 62.73	0	758558..760159	+	533	114798284	-	HNE_0752	-	putative peptide chain release factor 3
747	 65.63	0	760128..760610	-	160	114799424	-	HNE_0753	-	hypothetical protein
748	 64.20	0	760691..762517	-	608	114799256	-	HNE_0754	-	ABC transporter, ATP-binding protein
749	 63.11	0	762551..763225	-	224	114800237	rsuA	HNE_0755	-	ribosomal small subunit pseudouridine synthase A
750	 62.25	0	763233..764273	-	346	114797404	-	HNE_0756	-	putative methyltransferase
751	 65.13	0	764335..765243	-	302	114798177	-	HNE_0757	-	putative lipoprotein
752	 63.23	0	765360..766610	-	416	114798967	-	HNE_0758	-	acetyl-CoA acetyltransferase
753	 61.43	0	767029..767448	+	139	114799024	-	HNE_0759	-	TadE-like family protein
754	 64.07	0	767450..769180	+	576	114799760	-	HNE_0760	-	hypothetical protein
755	 64.43	0	769227..770387	-	386	114798754	dnaJ	HNE_0761	-	chaperone protein DnaJ
756	 65.82	+1	770487..771785	-	432	114799659	-	HNE_0762	-	hypothetical protein
757	 66.89	+1	771833..772708	+	291	114797084	-	HNE_0763	-	tetrapyrrole methylase family protein
758	 68.56	+1	772698..773066	+	122	114797099	-	HNE_0764	-	hypothetical protein
759	 62.37	0	773212..774978	+	588	114797969	-	HNE_0765	-	hypothetical protein
760	 64.10	0	774989..776116	+	375	114799183	-	HNE_0766	-	glycosyl transferase, group 2
761	 65.38	0	776126..776593	-	155	114799964	-	HNE_0767	-	cytochrome c family protein
762	 65.09	0	776708..778801	+	697	114798595	-	HNE_0768	-	1A family penicillin-binding protein
763	 61.79	0	778903..779886	-	327	114799344	-	HNE_0769	-	putative diguanylate cyclase
764	 62.89	0	780195..780776	+	193	114797253	-	HNE_0770	-	NnrU family protein
765	 64.61	0	780833..781660	+	275	114797775	panB	HNE_0771	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
766	 65.27	0	781740..782456	+	238	114799082	-	HNE_0772	-	hypothetical protein
767	 63.56	0	782453..783802	+	449	114798096	-	HNE_0773	-	PQQ repeat-containing protein
768	 63.14	0	783855..785387	+	510	114798294	engA	HNE_0774	-	GTP-binding protein EngA
769	 55.00	-1	785452..786522	-	356	114797309	-	HNE_0775	-	mannose-1-phosphate guanylyltransferase
770	 61.34	0	786610..788541	-	643	114799988	cysNC	HNE_0776	-	sulfate adenylyltransferase, large subunit/adenylylsulfate kinase
771	 62.51	0	788541..789527	-	328	114799213	cysD	HNE_0777	-	sulfate adenylyltransferase subunit 2
772	 63.49	0	789693..791519	+	608	114800082	glmS	HNE_0778	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
773	 54.30	-2	791573..792154	+	193	114799033	rfbC	HNE_0779	-	dTDP-4-dehydrorhamnose 3,5-epimerase
774	 61.84	0	792151..793041	+	296	114798649	rfbD	HNE_0780	-	dTDP-4-dehydrorhamnose reductase
775	 56.59	-1	793156..793989	+	277	114797221	-	HNE_0781	-	hypothetical protein
776	 57.13	-1	793956..795161	-	401	114797227	-	HNE_0782	-	N-acylglucosamine 2-epimerase
777	 62.25	0	795428..796582	+	384	114799993	-	HNE_0783	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
778	 50.23	-2	796755..796973	-	72	114800368	-	HNE_0784	-	DNA-binding protein
779	 61.73	0	797474..798142	+	222	114797997	-	HNE_0785	-	ECF subfamily RNA polymerase sigma factor
780	 62.77	0	798390..799571	-	393	114798411	metK	HNE_0786	-	S-adenosylmethionine synthetase
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.