IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
650	 60.99	0	658000..658563	-	187	114797229	-	HNE_0655	-	FUR family transcriptional regulator
651	 67.19	+1	658615..658998	+	127	114800409	-	HNE_0656	-	MarR family transcriptional regulator
652	 65.74	0	659030..659890	+	286	114799232	-	HNE_0657	-	NlpC/P60 family protein
653	 63.91	0	659971..660768	-	265	114797971	-	HNE_0658	-	cytochrome c family protein
654	 60.93	0	660931..661767	+	278	114799113	-	HNE_0659	-	prephenate dehydratase
655	 63.41	0	661751..662671	-	306	114800121	-	HNE_0660	-	LysR family transcriptional regulator
656	 59.76	0	662796..663287	+	163	114797703	-	HNE_0661	-	hypothetical protein
657	 54.68	-2	663353..663811	+	152	114797133	-	HNE_0662	-	YHS domain-containing protein
658	 56.14	-1	664050..664277	-	75	114800259	-	HNE_0663	-	hypothetical protein
659	 59.26	0	664382..665299	-	305	114798474	-	HNE_0664	-	NUDIX family hydrolase
660	 61.43	0	665431..667605	+	724	114798026	-	HNE_0665	-	putative lipoprotein
661	 62.77	0	667614..671330	-	1238	114797087	-	HNE_0666	-	putative localization factor protein PodJ
662	 60.21	0	671606..672085	+	159	114799069	-	HNE_0667	-	MerR family transcriptional regulator
663	 61.68	0	672196..673980	+	594	114800213	-	HNE_0668	-	acyl-CoA dehydrogenase family protein
664	 60.03	0	674093..675268	+	391	114799086	-	HNE_0669	-	acyl-CoA dehydrogenase
665	 61.68	0	675276..675716	+	146	114798681	-	HNE_0670	-	thioesterase family protein
666	 63.52	0	675735..676940	+	401	114797516	-	HNE_0671	-	acetyl-CoA acetyltransferase
667	 60.93	0	676970..679201	+	743	114797137	-	HNE_0672	-	enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase
668	 63.96	0	679299..682028	-	909	114800079	-	HNE_0673	-	ribonuclease
669	 63.13	0	682424..683668	+	414	114800021	-	HNE_0674	-	N-acetylmuramoyl-L-alanine amidase
670	 65.89	+1	683559..685487	+	642	114799492	-	HNE_0675	-	TPR repeat-containing protein
671	 67.56	+1	685501..686397	+	298	114798429	ispE	HNE_0676	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
672	 67.60	+1	686394..687461	+	355	114797664	-	HNE_0677	-	glycosyl transferase, group 4 family protein
673	 64.30	0	687463..688476	-	337	114798232	-	HNE_0678	-	polyprenyl synthetase
674	 63.43	0	688650..689144	+	164	114798516	-	HNE_0679	-	putative lipoprotein
675	 60.39	0	689144..689350	+	68	114799829	-	HNE_0680	-	hypothetical protein
676	 66.40	+1	689347..690090	+	247	114798814	-	HNE_0681	-	hypothetical protein
677	 55.26	-1	690167..690280	+	37	114799568	-	HNE_0682	-	hypothetical protein
678	 63.18	0	690350..691237	+	295	114799009	glyQ	HNE_0683	-	glycyl-tRNA synthetase subunit alpha
679	 63.41	0	691318..691839	+	173	114798015	-	HNE_0684	-	putative lipoprotein
680	 64.55	0	691934..694054	+	706	114797868	glyS	HNE_0685	-	glycyl-tRNA synthetase, beta subunit
681	 63.54	0	694206..696923	+	905	114800443	ppdK	HNE_0686	-	pyruvate phosphate dikinase
682	 65.77	+1	697290..698519	+	409	114797673	-	HNE_0687	-	hydrolase
683	 64.20	0	698604..699413	-	269	114798485	-	HNE_0688	-	short chain dehydrogenase
684	 64.22	0	699469..700326	-	285	114797685	nadC	HNE_0689	-	nicotinate-nucleotide pyrophosphorylase
685	 69.02	+1	700323..701891	-	522	114800426	nadB	HNE_0690	-	L-aspartate oxidase
686	 61.88	0	701875..702354	-	159	114799594	-	HNE_0691	-	hypothetical protein
687	 61.23	0	702423..703433	-	336	114798115	nadA	HNE_0692	-	quinolinate synthetase complex, A subunit
688	 62.38	0	703802..705178	-	458	114799423	-	HNE_0693	-	hypothetical protein
689	 63.13	0	705219..706517	-	432	114799798	-	HNE_0694	-	amidohydrolase, carboxypeptidase-type
690	 63.81	0	707019..708629	-	536	114797080	-	HNE_0695	-	putative ATP-dependent RNA helicase RhlE
691	 60.03	0	708830..709492	-	220	114797796	sodB	HNE_0696	-	superoxide dismutase, Fe
692	 63.03	0	709495..710154	+	219	114799019	-	HNE_0697	-	hypothetical protein
693	 67.97	+1	710286..710822	+	178	114797576	-	HNE_0698	-	putative lipoprotein
694	 64.83	0	710832..711809	-	325	114798797	-	HNE_0699	-	lipid A biosynthesis acyltransferase
695	 67.77	+1	711806..712804	-	332	114799558	lpxK	HNE_0700	-	tetraacyldisaccharide 4'-kinase
696	 68.60	+1	712801..714090	-	429	114799880	kdtA	HNE_0701	-	3-deoxy-D-manno-octulosonic-acid transferase
697	 65.90	+1	714087..714866	-	259	114797159	-	HNE_0702	-	hypothetical protein
698	 63.17	0	715690..716403	-	237	114797471	gph	HNE_0704	-	phosphoglycolate phosphatase
699	 65.73	0	716484..717869	+	461	114797715	glmU	HNE_0705	-	UDP-N-acetylglucosamine pyrophosphorylase
700	 62.59	0	717870..718580	+	236	114798972	rpiA	HNE_0706	-	ribose 5-phosphate isomerase A
701	 61.98	0	718635..720020	+	461	114799468	gor	HNE_0707	-	glutathione-disulfide reductase
702	 63.23	0	720055..721362	-	435	114800256	-	HNE_0708	-	nucleotide binding protein
703	 63.62	0	721515..722891	+	458	114797431	-	HNE_0709	-	3-deoxy-7-phosphoheptulonate synthase
704	 65.27	0	722960..723676	+	238	114798192	-	HNE_0710	-	CAAX amino protease
705	 64.90	0	723851..725266	+	471	114798693	-	HNE_0711	-	MATE efflux family protein
706	 57.30	-1	725298..725564	-	88	114799692	hup1	HNE_0712	-	DNA-binding protein HU
707	 61.29	0	725664..726575	-	303	114800309	-	HNE_0713	-	hypothetical protein
708	 61.68	0	726579..727601	-	340	114799480	-	HNE_0714	-	L4BD family NADP-dependent oxidoreductase
709	 64.83	0	727824..728750	+	308	114798808	-	HNE_0715	-	Gfo/Idh/MocA family oxidoreductase
710	 63.88	0	728752..729468	-	238	114800463	-	HNE_0716	-	short chain dehydrogenase/reductase family oxidoreductase
711	 61.57	0	729490..730941	-	483	114797301	purF	HNE_0717	-	amidophosphoribosyltransferase
712	 66.08	+1	731057..731905	-	282	114798030	-	HNE_0718	-	hypothetical protein
713	 57.39	-1	731970..732497	-	175	114798180	-	HNE_0719	-	CvpA family protein
714	 67.03	+1	732490..733872	-	460	114799161	radA	HNE_0720	-	DNA repair protein RadA
715	 61.62	0	733871..734464	+	197	114797652	-	HNE_0721	-	hypothetical protein
716	 67.25	+1	734501..735694	+	397	114798488	-	HNE_0722	-	pyridine nucleotide-disulfide oxidoreductase
717	 61.83	0	736557..737321	-	254	114798614	-	HNE_0723	-	ABC transporter, ATP-binding protein
718	 65.01	0	737318..738103	-	261	114798102	-	HNE_0724	-	hypothetical protein
719	 62.78	0	738110..739165	-	351	114797948	alr1	HNE_0725	-	alanine racemase
720	 62.73	0	739198..740850	-	550	114797393	-	HNE_0726	-	major facilitator family protein
721	 60.19	0	740887..741318	+	143	114799912	-	HNE_0727	-	hypothetical protein
722	 61.42	0	741404..742585	+	393	114799373	-	HNE_0728	-	hypothetical protein
723	 57.82	-1	742679..743164	+	161	114799200	-	HNE_0729	-	MnhE/PhaE family monovalent cation/proton antiporter
724	 60.27	0	743164..743460	+	98	114799983	-	HNE_0730	-	MnhF/PhaF family monovalent cation/proton antiporter
725	 62.06	0	743462..743830	+	122	114797245	-	HNE_0731	-	MnhG/PhaG family monovalent cation/proton antiporter
726	 60.68	0	743827..744444	+	205	114797993	-	HNE_0732	-	hypothetical protein
727	 59.82	0	744444..744896	+	150	114799795	-	HNE_0733	-	putative monovalent cation/H+ antiporter subunit B
728	 60.68	0	744901..745401	+	166	114799114	-	HNE_0734	-	putative NADH-quinone oxidoreductase
729	 61.39	0	745440..746936	+	498	114800322	-	HNE_0735	-	putative monovalent cation/H+ antiporter subunit D
730	 61.37	0	746933..748441	+	502	114797124	-	HNE_0736	-	putative NADH-quinone oxidoreductase
731	 60.59	0	748438..748881	+	147	114798330	-	HNE_0737	-	hypothetical protein
732	 60.47	0	748881..750656	+	591	114798610	-	HNE_0738	-	putative monovalent cation/H+ antiporter subunit D
733	 51.21	-2	750827..751240	+	137	114799831	-	HNE_0739	-	Ros/MucR family transcriptional regulator
734	 62.87	0	751388..751888	+	166	114797666	-	HNE_0740	-	hypothetical protein
735	 60.87	0	751990..752334	+	114	114799179	-	HNE_0741	-	DnaA domain-containing protein
736	 65.50	0	752331..753014	+	227	114800191	-	HNE_0742	-	hypothetical protein
737	 64.79	0	752667..752933	-	88	114800096	-	HNE_0743	-	hypothetical protein
738	 60.24	0	753021..753440	-	139	114797908	-	HNE_0744	-	SufE family Fe-S metabolism protein
739	 61.16	0	753527..754525	-	332	114797262	-	HNE_0745	-	hypothetical protein
740	 66.36	+1	754650..756269	+	539	114798414	-	HNE_0746	-	putative sensor histidine kinase DivJ
741	 57.69	-1	756361..756672	+	103	114799583	-	HNE_0747	-	putative lipoprotein
742	 64.66	0	756703..757050	+	115	114797676	-	HNE_0748	-	hypothetical protein
743	 62.47	0	757148..757552	+	134	114798927	-	HNE_0749	-	putative lipoprotein
744	 69.47	+2	757679..757999	+	106	114799697	-	HNE_0750	-	hypothetical protein
745	 56.02	-1	758071..758427	+	118	114798497	-	HNE_0751	-	hypothetical protein
746	 62.73	0	758558..760159	+	533	114798284	-	HNE_0752	-	putative peptide chain release factor 3
747	 65.63	0	760128..760610	-	160	114799424	-	HNE_0753	-	hypothetical protein
748	 64.20	0	760691..762517	-	608	114799256	-	HNE_0754	-	ABC transporter, ATP-binding protein
749	 63.11	0	762551..763225	-	224	114800237	rsuA	HNE_0755	-	ribosomal small subunit pseudouridine synthase A
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.