IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
347	 60.64	0	343795..345255	+	486	114797745	-	HNE_0351	-	putative ubiquinol-cytochrome c reductase, cytochrome b
348	 64.27	0	345281..346240	+	319	114797363	-	HNE_0352	-	putative ubiquinol-cytochrome c reductase, cytochrome c1
349	 67.24	+1	346256..346774	+	172	114799462	-	HNE_0353	-	acetyltransferase
350	 66.33	+1	346771..347649	+	292	114798898	mtaP	HNE_0354	-	methylthioadenosine phosphorylase
351	 64.76	0	347721..348719	+	332	114797053	-	HNE_0355	-	hypothetical protein
352	 65.63	0	348691..349173	+	160	114799850	-	HNE_0356	-	putative lipoprotein
353	 64.85	0	349255..349803	-	182	114799643	-	HNE_0357	-	fasciclin domain-containing protein
354	 62.41	0	349930..350493	-	187	114799966	-	HNE_0358	-	fasciclin domain-containing protein
355	 62.36	0	350712..351245	-	177	114800417	-	HNE_0359	-	fasciclin domain-containing protein
356	 66.24	+1	351455..352165	+	236	114797950	-	HNE_0360	-	DnaJ family molecular chaperone
357	 73.33	+2	352256..352540	+	94	114798970	-	HNE_0361	-	hypothetical protein
358	 59.74	0	352622..353560	-	312	114799706	prs	HNE_0362	-	ribose-phosphate pyrophosphokinase
359	 66.27	+1	353684..354448	-	254	114797428	-	HNE_0363	-	hypothetical protein
360	 62.08	0	354630..356462	+	610	114798286	typA	HNE_0364	-	GTP-binding protein TypA
361	 63.73	0	356489..356863	-	124	114799547	-	HNE_0365	-	putative lipoprotein
362	 58.06	-1	357030..357215	+	61	114799103	-	HNE_0366	-	hypothetical protein
363	 67.92	+1	357286..358482	-	398	114799607	-	HNE_0367	-	hypothetical protein
364	 62.90	0	358788..359132	-	114	114799937	-	HNE_0368	-	hypothetical protein
365	 68.29	+1	359705..360382	+	225	114799208	-	HNE_0369	-	hypothetical protein
366	 66.01	+1	360379..360984	-	201	114799985	recR	HNE_0370	-	recombination protein RecR
367	 62.35	0	361108..361431	-	107	114797665	-	HNE_0371	-	hypothetical protein
368	 66.67	+1	361448..363184	-	578	114798398	dnaX	HNE_0372	-	DNA polymerase III, subunits gamma and tau
369	 59.54	0	363300..364337	-	345	114799612	nrdF	HNE_0373	-	ribonucleotide-diphosphate reductase subunit beta
370	 65.35	0	364480..365775	-	431	114800371	-	HNE_0374	-	hypothetical protein
371	 65.16	0	366022..366948	-	308	114797409	-	HNE_0375	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
372	 57.77	-1	367177..370086	+	969	114800129	-	HNE_0376	-	PKD domain-containing protein
373	 63.00	0	370160..370432	-	90	114797658	-	HNE_0377	-	TM2 domain-containing protein
374	 58.74	0	370629..370994	-	121	114800392	-	HNE_0378	-	PRC-barrel domain-containing protein
375	 65.27	0	371146..372003	+	285	114799616	-	HNE_0379	-	putative ribosomal protein L11 methyltransferase PrmA
376	 60.85	0	372145..372402	+	85	114798858	-	HNE_0380	-	hypothetical protein
377	 65.29	0	372504..374315	+	603	114798047	-	HNE_0381	-	M24 family peptidase
378	 69.56	+2	374437..374886	+	149	114797296	-	HNE_0382	-	hypothetical protein
379	 60.36	0	374970..376094	-	374	114800032	-	HNE_0383	-	putative alpha-L-fucosidase
380	 63.39	0	376116..376847	-	243	114799211	-	HNE_0384	-	hypothetical protein
381	 68.57	+1	376880..378664	+	594	114797433	-	HNE_0385	-	putative DNA repair protein RecN
382	 64.96	0	378661..380766	+	701	114797923	ligA	HNE_0386	-	DNA ligase, NAD-dependent
383	 62.47	0	380786..381619	-	277	114798667	-	HNE_0387	-	putative competence lipoprotein ComL
384	 62.73	0	381843..382274	+	143	114799059	-	HNE_0388	-	DNA-binding protein
385	 64.80	0	382294..383205	-	303	114800236	lpxC	HNE_0389	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
386	 66.94	+1	383488..384972	-	494	114797115	ftsZ	HNE_0390	-	cell division protein FtsZ
387	 66.44	+1	385096..386391	-	431	114798337	ftsA	HNE_0391	-	cell division protein FtsA
388	 67.58	+1	386391..387263	-	290	114798641	-	HNE_0392	-	putative cell division protein FtsQ
389	 64.82	0	387251..388171	-	306	114799909	-	HNE_0393	-	D-alanine--D-alanine ligase
390	 63.49	0	388448..390490	+	680	114798082	-	HNE_0394	-	hypothetical protein
391	 45.54	-2	390627..391298	+	223	114799295	-	HNE_0395	-	hypothetical protein
392	 44.94	-2	391307..391780	+	157	114800234	-	HNE_0396	-	hypothetical protein
393	 68.21	+1	391893..392864	-	323	114799112	murB	HNE_0397	-	UDP-N-acetylenolpyruvoylglucosamine reductase
394	 67.80	+1	392949..393566	-	205	114800549	-	HNE_0398	-	hypothetical protein
395	 64.50	0	393820..396267	+	815	114797839	-	HNE_0399	-	putative tyrosine kinase DivL
396	 62.25	0	396465..397778	-	437	114800433	-	HNE_0400	-	sodium/dicarboxylate symporter
397	 69.50	+2	397904..400342	+	812	114797192	hrpB	HNE_0401	-	ATP-dependent helicase HrpB
398	 66.67	+1	400364..401806	+	480	114798405	dacB	HNE_0402	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
399	 61.54	0	401819..402247	-	142	114799648	-	HNE_0403	-	hypothetical protein
400	 56.93	-1	402417..403988	-	523	114799368	-	HNE_0404	-	amidohydrolase family protein
401	 56.79	-1	404087..405220	-	377	114800193	-	HNE_0405	-	AraC family transcriptional regulator
402	 65.90	+1	405333..405980	-	215	114797970	-	HNE_0406	-	RNA pseudouridine synthase family protein
403	 68.98	+1	405977..407401	-	474	114798787	-	HNE_0407	-	sensor histidine kinase
404	 63.67	0	407462..408895	-	477	114800416	-	HNE_0408	-	pyridine nucleotide-disulfide oxidoreductase
405	 66.00	+1	408888..409640	-	250	114799681	-	HNE_0409	-	hypothetical protein
406	 61.26	0	409755..410624	-	289	114798537	-	HNE_0410	-	hypothetical protein
407	 64.88	0	410702..411877	-	391	114799990	-	HNE_0411	-	beta-lactamase
408	 68.89	+1	412071..412205	+	44	114800039	rpmH	HNE_0412	-	ribosomal protein L34
409	 65.57	0	412243..412608	+	121	114798810	rnpA	HNE_0413	-	ribonuclease P protein component
410	 62.00	0	412663..414483	+	606	114798266	-	HNE_0414	-	inner membrane protein, 60 kDa
411	 62.44	0	414487..415149	+	220	114797282	-	HNE_0415	-	GTPase EngB
412	 61.04	0	415186..415647	+	153	114799269	-	HNE_0416	-	acetyltransferase
413	 65.84	+1	415707..415949	+	80	114799999	-	HNE_0417	-	hypothetical protein
414	 63.65	0	416012..416905	+	297	114798995	argB	HNE_0418	-	acetylglutamate kinase
415	 65.21	0	416880..417911	+	343	114797989	-	HNE_0419	-	hypothetical protein
416	 61.96	0	417908..418651	+	247	114797054	-	HNE_0420	-	pyrimidine 5'-nucleotidase
417	 65.22	0	418669..419496	+	275	114799814	dapD	HNE_0421	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
418	 57.89	-1	419571..419798	+	75	114799481	-	HNE_0422	-	hypothetical protein
419	 62.66	0	419937..420983	+	348	114797704	-	HNE_0423	-	putative sensor histidine kinase
420	 61.00	0	421009..421767	-	252	114800336	-	HNE_0424	-	hydrolase, alpha/beta fold family protein
421	 63.89	0	421842..422993	+	383	114799310	-	HNE_0425	-	glycosyl transferase, group 1 family protein
422	 65.05	0	423046..424035	+	329	114798117	-	HNE_0426	-	heptosyltransferase family protein
423	 65.63	0	424065..426581	-	838	114799180	-	HNE_0427	-	hypothetical protein
424	 58.20	-1	426869..427411	+	180	114799954	infC	HNE_0428	-	translation initiation factor IF-3
425	 61.28	0	427573..428574	+	333	114797173	-	HNE_0429	-	putative sensory box sensor histidine kinase
426	 59.20	0	428731..428931	+	66	114797968	rpmI	HNE_0430	-	50S ribosomal protein L35
427	 58.95	0	428990..429352	+	120	114798735	rplT	HNE_0431	-	ribosomal protein L20
428	 59.26	0	429374..429535	+	53	114798827	-	HNE_0432	-	hypothetical protein
429	 63.51	0	429669..430745	+	358	114800189	pheS	HNE_0433	-	phenylalanyl-tRNA synthetase, alpha subunit
430	 60.21	0	430742..431221	+	159	114797877	-	HNE_0434	-	hypothetical protein
431	 62.95	0	431218..433611	+	797	114798222	pheT	HNE_0435	-	phenylalanyl-tRNA synthetase subunit beta
432	 61.07	0	433636..434457	+	273	114797481	-	HNE_0436	-	cation channel family protein
433	 65.58	0	434450..435280	+	276	114798226	dapB	HNE_0437	-	dihydrodipicolinate reductase
434	 61.48	0	435380..435784	+	134	114798812	-	HNE_0438	-	PTS system mannose/fructose/sorbose family IID subunit
435	 64.97	0	435784..436077	+	97	114800448	-	HNE_0439	-	phosphocarrier protein HPr
436	 61.03	0	436088..437647	-	519	114797728	leuA	HNE_0440	-	2-isopropylmalate synthase
437	 64.53	0	437799..438548	-	249	114798677	-	HNE_0441	-	hypothetical protein
438	 63.36	0	438602..439570	-	322	114799268	-	HNE_0442	-	short chain dehydrogenase/reductase family oxidoreductase
439	 60.89	0	439717..440322	+	201	114797412	-	HNE_0443	-	hypothetical protein
440	 64.73	0	440319..440783	-	154	114798291	-	HNE_0444	-	putative lipoprotein
441	 63.56	0	440872..441546	+	224	114798870	-	HNE_0445	-	glycosy hydrolase family protein
442	 62.43	0	441554..442120	-	188	114797502	-	HNE_0446	-	acetyltransferase
443	 60.49	0	442135..443154	-	339	114800540	ilvC	HNE_0447	-	ketol-acid reductoisomerase
444	 63.62	0	443205..443828	-	207	114798195	-	HNE_0448	-	hypothetical protein
445	 61.20	0	443828..444394	-	188	114797563	ilvH	HNE_0449	-	acetolactate synthase 3 regulatory subunit
446	 61.11	0	444391..445092	-	233	114799718	-	HNE_0450	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.