IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
306	 59.63	0	304074..305267	+	397	114799396	sucC	HNE_0310	-	succinyl-CoA synthetase, beta subunit
307	 60.69	0	305272..306174	+	300	114798328	sucD	HNE_0311	-	succinyl-CoA synthetase subunit alpha
308	 62.51	0	306324..309332	+	1002	114800323	kgd	HNE_0312	-	alpha-ketoglutarate decarboxylase
309	 62.86	0	309362..310912	+	516	114799329	sucB	HNE_0313	-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
310	 61.62	0	310909..311622	-	237	114799483	-	HNE_0314	-	hypothetical protein
311	 62.54	0	311781..312653	+	290	114798543	-	HNE_0315	-	glutathione S-transferase
312	 65.64	0	312657..313634	+	325	114797156	-	HNE_0316	-	hypothetical protein
313	 63.48	0	313726..314070	+	114	114797698	-	HNE_0317	-	putative chorismate mutase, type II
314	 68.48	+1	314031..314417	-	128	114800541	-	HNE_0318	-	hypothetical protein
315	 59.03	0	314588..314731	+	47	114800204	-	HNE_0319	-	hypothetical protein
316	 69.37	+1	314814..316808	+	664	114798902	-	HNE_0320	-	hypothetical protein
317	 65.92	+1	316818..317750	-	310	114798673	-	HNE_0321	-	LysR family transcriptional regulator
318	 68.39	+1	317859..319310	+	483	114800230	cysG	HNE_0322	-	siroheme synthase
319	 64.81	0	319307..319630	+	107	114797102	-	HNE_0323	-	hypothetical protein
320	 63.14	0	319630..320253	+	207	114798341	-	HNE_0324	-	glutathione S-transferase
321	 62.87	0	320253..321911	+	552	114798651	-	HNE_0325	-	putative sulfite reductase
322	 61.28	0	321898..322380	+	160	114799901	-	HNE_0326	-	hypothetical protein
323	 63.54	0	322398..323132	+	244	114798004	cysH	HNE_0327	-	phosphoadenosine phosphosulfate reductase
324	 67.41	+1	323239..324048	-	269	114799577	-	HNE_0328	-	RNA methyltransferase
325	 62.76	0	324079..324411	-	110	114800064	-	HNE_0329	-	hypothetical protein
326	 60.65	0	324491..325387	-	298	114797392	rpoH	HNE_0330	-	RNA polymerase factor sigma-32
327	 64.39	0	325779..326921	-	380	114798141	-	HNE_0331	-	AFG1 family ATPase
328	 59.51	0	326937..327551	-	204	114799025	-	HNE_0332	-	S54 family peptidase
329	 62.89	0	327659..328108	-	149	114799030	-	HNE_0333	-	response regulator receiver domain-containing protein
330	 51.85	-2	328188..328322	+	44	114798280	-	HNE_0334	-	hypothetical protein
331	 63.25	0	328339..329244	+	301	114800146	-	HNE_0335	-	acyltransferase domain-containing protein
332	 65.04	0	329316..329807	+	163	114799412	-	HNE_0336	-	acetyltransferase
333	 64.37	0	329928..331277	+	449	114798518	-	HNE_0337	-	peptide-acetyl-coenzyme A transporter (PAT) family protein
334	 66.96	+1	331302..333341	-	679	114797790	-	HNE_0338	-	hypothetical protein
335	 69.69	+2	333338..336214	-	958	114800527	-	HNE_0339	-	hypothetical protein
336	 68.97	+1	336211..337077	-	288	114797646	-	HNE_0340	-	hypothetical protein
337	 66.41	+1	337074..337463	-	129	114798095	-	HNE_0341	-	putative lipoprotein
338	 66.57	+1	337460..338458	-	332	114799543	-	HNE_0342	-	AAA family ATPase
339	 60.03	0	338534..339121	+	195	114798915	-	HNE_0343	-	hypothetical protein
340	 63.62	0	339131..339754	+	207	114799866	-	HNE_0344	-	NUDIX family hydrolase
341	 64.96	0	339839..340189	+	116	114798320	-	HNE_0345	-	hypothetical protein
342	 69.55	+2	340236..341381	+	381	114799278	-	HNE_0346	-	tRNA nucleotidyltransferase/poly(A) polymerase family protein
343	 57.78	-1	341509..341733	+	74	114800278	-	HNE_0347	-	putative addiction module antidote
344	 64.60	0	341730..342116	+	128	114797849	-	HNE_0348	-	putative addiction module toxin
345	 63.53	0	342121..343014	-	297	114798887	hemF	HNE_0349	-	coproporphyrinogen III oxidase
346	 64.36	0	343216..343779	+	187	114798737	petA	HNE_0350	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
347	 60.64	0	343795..345255	+	486	114797745	-	HNE_0351	-	putative ubiquinol-cytochrome c reductase, cytochrome b
348	 64.27	0	345281..346240	+	319	114797363	-	HNE_0352	-	putative ubiquinol-cytochrome c reductase, cytochrome c1
349	 67.24	+1	346256..346774	+	172	114799462	-	HNE_0353	-	acetyltransferase
350	 66.33	+1	346771..347649	+	292	114798898	mtaP	HNE_0354	-	methylthioadenosine phosphorylase
351	 64.76	0	347721..348719	+	332	114797053	-	HNE_0355	-	hypothetical protein
352	 65.63	0	348691..349173	+	160	114799850	-	HNE_0356	-	putative lipoprotein
353	 64.85	0	349255..349803	-	182	114799643	-	HNE_0357	-	fasciclin domain-containing protein
354	 62.41	0	349930..350493	-	187	114799966	-	HNE_0358	-	fasciclin domain-containing protein
355	 62.36	0	350712..351245	-	177	114800417	-	HNE_0359	-	fasciclin domain-containing protein
356	 66.24	+1	351455..352165	+	236	114797950	-	HNE_0360	-	DnaJ family molecular chaperone
357	 73.33	+2	352256..352540	+	94	114798970	-	HNE_0361	-	hypothetical protein
358	 59.74	0	352622..353560	-	312	114799706	prs	HNE_0362	-	ribose-phosphate pyrophosphokinase
359	 66.27	+1	353684..354448	-	254	114797428	-	HNE_0363	-	hypothetical protein
360	 62.08	0	354630..356462	+	610	114798286	typA	HNE_0364	-	GTP-binding protein TypA
361	 63.73	0	356489..356863	-	124	114799547	-	HNE_0365	-	putative lipoprotein
362	 58.06	-1	357030..357215	+	61	114799103	-	HNE_0366	-	hypothetical protein
363	 67.92	+1	357286..358482	-	398	114799607	-	HNE_0367	-	hypothetical protein
364	 62.90	0	358788..359132	-	114	114799937	-	HNE_0368	-	hypothetical protein
365	 68.29	+1	359705..360382	+	225	114799208	-	HNE_0369	-	hypothetical protein
366	 66.01	+1	360379..360984	-	201	114799985	recR	HNE_0370	-	recombination protein RecR
367	 62.35	0	361108..361431	-	107	114797665	-	HNE_0371	-	hypothetical protein
368	 66.67	+1	361448..363184	-	578	114798398	dnaX	HNE_0372	-	DNA polymerase III, subunits gamma and tau
369	 59.54	0	363300..364337	-	345	114799612	nrdF	HNE_0373	-	ribonucleotide-diphosphate reductase subunit beta
370	 65.35	0	364480..365775	-	431	114800371	-	HNE_0374	-	hypothetical protein
371	 65.16	0	366022..366948	-	308	114797409	-	HNE_0375	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
372	 57.77	-1	367177..370086	+	969	114800129	-	HNE_0376	-	PKD domain-containing protein
373	 63.00	0	370160..370432	-	90	114797658	-	HNE_0377	-	TM2 domain-containing protein
374	 58.74	0	370629..370994	-	121	114800392	-	HNE_0378	-	PRC-barrel domain-containing protein
375	 65.27	0	371146..372003	+	285	114799616	-	HNE_0379	-	putative ribosomal protein L11 methyltransferase PrmA
376	 60.85	0	372145..372402	+	85	114798858	-	HNE_0380	-	hypothetical protein
377	 65.29	0	372504..374315	+	603	114798047	-	HNE_0381	-	M24 family peptidase
378	 69.56	+2	374437..374886	+	149	114797296	-	HNE_0382	-	hypothetical protein
379	 60.36	0	374970..376094	-	374	114800032	-	HNE_0383	-	putative alpha-L-fucosidase
380	 63.39	0	376116..376847	-	243	114799211	-	HNE_0384	-	hypothetical protein
381	 68.57	+1	376880..378664	+	594	114797433	-	HNE_0385	-	putative DNA repair protein RecN
382	 64.96	0	378661..380766	+	701	114797923	ligA	HNE_0386	-	DNA ligase, NAD-dependent
383	 62.47	0	380786..381619	-	277	114798667	-	HNE_0387	-	putative competence lipoprotein ComL
384	 62.73	0	381843..382274	+	143	114799059	-	HNE_0388	-	DNA-binding protein
385	 64.80	0	382294..383205	-	303	114800236	lpxC	HNE_0389	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
386	 66.94	+1	383488..384972	-	494	114797115	ftsZ	HNE_0390	-	cell division protein FtsZ
387	 66.44	+1	385096..386391	-	431	114798337	ftsA	HNE_0391	-	cell division protein FtsA
388	 67.58	+1	386391..387263	-	290	114798641	-	HNE_0392	-	putative cell division protein FtsQ
389	 64.82	0	387251..388171	-	306	114799909	-	HNE_0393	-	D-alanine--D-alanine ligase
390	 63.49	0	388448..390490	+	680	114798082	-	HNE_0394	-	hypothetical protein
391	 45.54	-2	390627..391298	+	223	114799295	-	HNE_0395	-	hypothetical protein
392	 44.94	-2	391307..391780	+	157	114800234	-	HNE_0396	-	hypothetical protein
393	 68.21	+1	391893..392864	-	323	114799112	murB	HNE_0397	-	UDP-N-acetylenolpyruvoylglucosamine reductase
394	 67.80	+1	392949..393566	-	205	114800549	-	HNE_0398	-	hypothetical protein
395	 64.50	0	393820..396267	+	815	114797839	-	HNE_0399	-	putative tyrosine kinase DivL
396	 62.25	0	396465..397778	-	437	114800433	-	HNE_0400	-	sodium/dicarboxylate symporter
397	 69.50	+2	397904..400342	+	812	114797192	hrpB	HNE_0401	-	ATP-dependent helicase HrpB
398	 66.67	+1	400364..401806	+	480	114798405	dacB	HNE_0402	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
399	 61.54	0	401819..402247	-	142	114799648	-	HNE_0403	-	hypothetical protein
400	 56.93	-1	402417..403988	-	523	114799368	-	HNE_0404	-	amidohydrolase family protein
401	 56.79	-1	404087..405220	-	377	114800193	-	HNE_0405	-	AraC family transcriptional regulator
402	 65.90	+1	405333..405980	-	215	114797970	-	HNE_0406	-	RNA pseudouridine synthase family protein
403	 68.98	+1	405977..407401	-	474	114798787	-	HNE_0407	-	sensor histidine kinase
404	 63.67	0	407462..408895	-	477	114800416	-	HNE_0408	-	pyridine nucleotide-disulfide oxidoreductase
405	 66.00	+1	408888..409640	-	250	114799681	-	HNE_0409	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.