IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3378	 67.15	+1	3577889..3578716	-	275	114797873	-	HNE_3439	-	SCP-like extracellular family protein
3379	 61.43	0	3578779..3579465	-	228	114800418	-	HNE_3440	-	putative uridine kinase
3380	 60.74	0	3579558..3581699	-	713	114798182	pnpA	HNE_3441	-	polynucleotide phosphorylase/polyadenylase
3381	 54.81	-1	3581768..3582037	-	89	114797457	rpsO	HNE_3442	-	ribosomal protein S15
3382	 62.50	0	3582083..3582202	-	39	114797473	-	HNE_3443	-	hypothetical protein
3383	 61.25	0	3582333..3582701	+	122	114799721	-	HNE_3444	-	putative lipoprotein
3384	 68.79	+1	3582725..3583195	+	156	114799010	-	HNE_3445	-	hypothetical protein
3385	 67.41	+1	3583402..3584340	+	312	114798666	-	HNE_3446	-	ISHne3, transposase
3386	 62.03	0	3585322..3586614	-	430	114799060	mdeA	HNE_3448	-	methionine gamma-lyase
3387	 63.89	0	3586724..3587515	+	263	114798157	-	HNE_3449	-	thermonuclease family protein
3388	 62.27	0	3587521..3588408	-	295	114798150	-	HNE_3450	-	putative alternative sigma factor RpoH
3389	 63.99	0	3588598..3589083	+	161	114798968	-	HNE_3451	-	hypothetical protein
3390	 65.32	0	3589080..3589526	+	148	114799752	-	HNE_3452	-	hypothetical protein
3391	 61.99	0	3589530..3590597	-	355	114797906	-	HNE_3453	-	citrate synthase 2
3392	 66.22	+1	3590675..3591805	+	376	114797889	-	HNE_3454	-	citrate synthase family protein
3393	 62.46	0	3591807..3593780	-	657	114798491	tkt	HNE_3455	-	transketolase
3394	 65.40	0	3593866..3594180	+	104	114799291	-	HNE_3456	-	hypothetical protein
3395	 65.71	0	3594167..3594478	+	103	114800282	-	HNE_3457	-	hypothetical protein
3396	 63.28	0	3594475..3595182	+	235	114800140	-	HNE_3458	-	hypothetical protein
3397	 59.62	0	3595196..3595408	+	70	114800379	-	HNE_3459	-	hypothetical protein
3398	 64.05	0	3595428..3596000	+	190	114797243	-	HNE_3460	-	putative ATP:cob(I)alamin adenosyltransferase
3399	 62.10	0	3596004..3596966	-	320	114798378	-	HNE_3461	-	metallo-beta-lactamase family protein
3400	 67.26	+1	3597034..3599718	-	894	114800374	-	HNE_3462	-	hypothetical protein
3401	 63.14	0	3599697..3600971	-	424	114799974	lysA	HNE_3463	-	diaminopimelate decarboxylase
3402	 64.47	0	3600984..3601211	-	75	114800174	-	HNE_3464	-	putative lipoprotein
3403	 62.52	0	3601452..3602849	-	465	114798021	argH	HNE_3465	-	argininosuccinate lyase
3404	 61.93	0	3602896..3603486	+	196	114799212	-	HNE_3466	-	putative thiol:disulfide interchange protein
3405	 64.18	0	3603811..3604293	+	160	114799390	-	HNE_3467	-	hypothetical protein
3406	 63.43	0	3604300..3604794	-	164	114799034	-	HNE_3468	-	putative nuclease
3407	 58.82	0	3604911..3605789	-	292	114797883	-	HNE_3469	-	3-hydroxybutyryl-CoA dehydrogenase
3408	 60.75	0	3605943..3606872	-	309	114797076	etfA	HNE_3470	-	electron transfer flavoprotein, alpha subunit
3409	 61.04	0	3606872..3607618	-	248	114799429	eftB	HNE_3471	-	electron transfer flavoprotein, beta subunit
3410	 65.55	0	3607747..3609000	-	417	114800401	-	HNE_3472	-	putative folylpolyglutamate synthase
3411	 62.28	0	3608997..3609977	-	326	114797289	accD	HNE_3473	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
3412	 61.84	0	3610008..3610835	-	275	114798201	trpA	HNE_3474	-	tryptophan synthase, alpha subunit
3413	 58.88	0	3610838..3611158	-	106	114798841	cutA	HNE_3475	-	divalent-cation tolerance protein CutA
3414	 62.05	0	3611155..3612366	-	403	114799821	trpB	HNE_3476	-	tryptophan synthase subunit beta
3415	 63.68	0	3612405..3613040	-	211	114797372	trpF	HNE_3477	-	N-(5'phosphoribosyl)anthranilate isomerase
3416	 60.52	0	3613303..3613953	+	216	114797543	msrA2	HNE_3479	-	methionine-S-sulfoxide reductase
3417	 64.44	0	3613969..3614958	-	329	114800216	-	HNE_3480	-	hypothetical protein
3418	 63.00	0	3615111..3615956	+	281	114799552	-	HNE_3481	-	glutamyl-Q tRNA(Asp) synthetase
3419	 64.84	0	3615953..3616885	+	310	114797206	-	HNE_3482	-	putative transporter
3420	 64.47	0	3616953..3618542	+	529	114799748	-	HNE_3483	-	alkaline phosphatase
3421	 63.27	0	3618551..3618991	-	146	114799141	-	HNE_3484	-	hypothetical protein
3422	 66.42	+1	3619094..3619909	+	271	114798593	-	HNE_3485	-	DNA-binding protein
3423	 63.40	0	3619995..3621095	+	366	114797810	-	HNE_3486	-	alcohol dehydrogenase, class III
3424	 60.06	0	3621155..3621865	+	236	114799952	-	HNE_3487	-	hypothetical protein
3425	 61.24	0	3621862..3622911	-	349	114799261	pyrD	HNE_3488	-	dihydroorotate oxidase
3426	 64.35	0	3622908..3623252	-	114	114800306	-	HNE_3489	-	hypothetical protein
3427	 69.07	+1	3623297..3625255	-	652	114799277	-	HNE_3490	-	hypothetical protein
3428	 61.92	0	3625430..3626671	+	413	114799175	argG	HNE_3491	-	argininosuccinate synthase
3429	 66.13	+1	3626752..3627315	-	187	114798272	-	HNE_3492	-	hypothetical protein
3430	 65.16	0	3627686..3629677	-	663	114797802	cobT	HNE_3493	-	cobaltochelatase, CobT subunit
3431	 61.28	0	3629708..3630691	-	327	114799817	cobS	HNE_3494	-	cobaltochelatase, CobS subunit
3432	 63.79	0	3630848..3632131	+	427	114799305	-	HNE_3495	-	hypothetical protein
3433	 62.14	0	3632144..3632761	-	205	114798714	msrA3	HNE_3496	-	methionine-S-sulfoxide reductase
3434	 62.62	0	3632878..3634533	-	551	114799630	-	HNE_3497	-	putative lipoprotein
3435	 58.60	0	3634765..3635049	-	94	114799496	rpmB	HNE_3498	-	50S ribosomal protein
3436	 64.32	0	3635328..3636221	+	297	114800078	-	HNE_3499	-	hypothetical protein
3437	 66.96	+1	3636243..3637268	-	341	114799098	-	HNE_3500	-	RluA family pseudouridine synthase
3438	 65.66	0	3637362..3639047	+	561	114798024	phoD2	HNE_3501	-	alkaline phosphatase
3439	 67.33	+1	3639044..3639802	-	252	114797252	-	HNE_3502	-	oxidoreductase-like protein
3440	 55.86	-1	3639910..3640131	-	73	114797747	-	HNE_3503	-	hypothetical protein
3441	 66.08	+1	3640179..3640865	-	228	114799892	-	HNE_3504	-	GGDEF domain-containing protein
3442	 62.82	0	3640875..3641030	-	51	114799300	-	HNE_3505	-	hypothetical protein
3443	 65.05	0	3640999..3641493	+	164	114798773	purE	HNE_3506	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3444	 64.17	0	3641490..3642569	+	359	114800267	purK	HNE_3507	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
3445	 63.23	0	3642574..3643329	+	251	114797561	-	HNE_3508	-	creatininase
3446	 65.16	0	3643428..3644159	+	243	114797705	-	HNE_3509	-	ABC transporter, ATP-binding protein
3447	 62.72	0	3644180..3644914	+	244	114798656	-	HNE_3510	-	putative ABC transporter, permease protein
3448	 65.76	0	3644945..3646813	+	622	114799662	-	HNE_3511	-	hypothetical protein
3449	 66.57	+1	3646810..3647862	+	350	114799832	-	HNE_3512	-	hypothetical protein
3450	 64.51	0	3647863..3648510	-	215	114798088	-	HNE_3513	-	hypothetical protein
3451	 62.25	0	3648618..3651380	-	920	114799040	acnA	HNE_3514	-	aconitate hydratase
3452	 67.87	+1	3651552..3652133	+	193	114800037	ccmA	HNE_3515	-	heme exporter protein CcmA
3453	 68.77	+1	3652130..3652795	+	221	114800180	ccmB	HNE_3516	-	heme exporter protein CcmB
3454	 63.10	0	3652819..3653547	+	242	114800532	ccmC	HNE_3517	-	heme exporter protein CcmC
3455	 66.04	+1	3653551..3653709	+	52	114798547	-	HNE_3518	-	putative lipoprotein
3456	 63.05	0	3653706..3654230	+	174	114799338	-	HNE_3519	-	putative thiol:disulfide interchange protein
3457	 59.94	0	3654253..3654891	-	212	114797467	-	HNE_3520	-	MarR family transcriptional regulator
3458	 56.98	-1	3655083..3655598	+	171	114799173	-	HNE_3521	-	NUDIX family hydrolase NudH subfamily hydrolase
3459	 58.79	0	3655588..3656349	-	253	114798221	-	HNE_3522	-	putative intracellular septation protein A
3460	 67.83	+1	3656429..3657289	-	286	114799708	-	HNE_3523	-	hypothetical protein
3461	 64.00	0	3657579..3658442	+	287	114797795	-	HNE_3524	-	hypothetical protein
3462	 64.25	0	3658543..3660282	+	579	114798786	-	HNE_3525	-	amidohydrolase family protein/D-aminoacylase domain-containing protein
3463	 64.26	0	3660286..3661530	-	414	114799634	ftsY	HNE_3526	-	signal recognition particle-docking protein FtsY
3464	 65.10	0	3661527..3662804	-	425	114800325	-	HNE_3527	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
3465	 57.95	-1	3662876..3663334	-	152	114799327	-	HNE_3528	-	hypothetical protein
3466	 62.72	0	3663413..3664222	-	269	114797495	dapF	HNE_3529	-	diaminopimelate epimerase
3467	 60.91	0	3664277..3664693	-	138	114798732	-	HNE_3530	-	hypothetical protein
3468	 62.68	0	3664725..3665777	-	350	114798842	-	HNE_3531	-	MaoC domain-containing protein
3469	 62.96	0	3665825..3666094	-	89	114800343	-	HNE_3532	-	hypothetical protein
3470	 60.34	0	3666180..3666527	-	115	114797794	-	HNE_3533	-	putative arsenate reductase
3471	 63.48	0	3666591..3667469	-	292	114799185	citE	HNE_3534	-	citrate lyase, beta subunit
3472	 65.62	0	3667523..3667999	+	158	114799299	-	HNE_3535	-	acetyltransferase
3473	 66.84	+1	3667992..3669125	+	377	114797143	-	HNE_3536	-	putative esterase
3474	 63.16	0	3669244..3670155	-	303	114798108	rarD	HNE_3537	-	chloramphenicol-sensitivity protein (RarD) family protein
3475	 58.65	0	3670288..3672783	-	831	114799847	-	HNE_3538	-	TonB-dependent receptor
3476	 63.37	0	3673018..3674562	+	514	114798850	-	HNE_3539	-	sulfotransferase domain-containing protein
3477	 58.90	0	3674624..3675640	+	338	114798332	-	HNE_3540	-	aldo/keto reductase family oxidoreductase
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.