IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3253	 56.15	-1	3468055..3468444	+	129	114800112	-	HNE_3314	-	hypothetical protein
3254	 65.29	0	3468445..3469170	-	241	114798422	rph	HNE_3315	-	ribonuclease PH
3255	 64.33	0	3469261..3470931	+	556	114799647	fhs	HNE_3316	-	formate--tetrahydrofolate ligase
3256	 66.76	+1	3470977..3472065	+	362	114800305	hrcA	HNE_3317	-	heat-inducible transcription repressor
3257	 66.14	+1	3472065..3472631	+	188	114797336	grpE	HNE_3318	-	co-chaperone GrpE
3258	 67.54	+1	3472650..3473570	-	306	114797965	-	HNE_3319	-	hypothetical protein
3259	 67.06	+1	3473667..3473918	-	83	114799170	-	HNE_3320	-	hypothetical protein
3260	 61.81	0	3474210..3476105	+	631	114798319	dnaK	HNE_3321	-	chaperone protein DnaK
3261	 65.05	0	3476261..3476878	+	205	114798065	-	HNE_3322	-	hypothetical protein
3262	 62.53	0	3476925..3477914	-	329	114798574	-	HNE_3323	-	putative quinone oxidoreductase
3263	 67.24	+1	3478012..3478884	+	290	114800051	-	HNE_3324	-	putative asparaginase
3264	 62.93	0	3478881..3479201	+	106	114797073	-	HNE_3325	-	hypothetical protein
3265	 62.17	0	3479201..3479734	+	177	114798567	-	HNE_3326	-	RNA methyltransferase
3266	 61.93	0	3479756..3480430	-	224	114799135	-	HNE_3327	-	ChR family anti-sigma factor
3267	 60.81	0	3480520..3481065	-	181	114798215	-	HNE_3328	-	ECF subfamily RNA polymerase sigma factor
3268	 59.74	0	3481255..3481788	+	177	114799447	-	HNE_3329	-	hypothetical protein
3269	 63.99	0	3481862..3482497	-	211	114800290	-	HNE_3330	-	OmpA family protein
3270	 61.43	0	3482686..3483849	+	387	114797352	-	HNE_3331	-	radical SAM protein
3271	 64.07	0	3483860..3486091	-	743	114800151	-	HNE_3332	-	putative transporter
3272	 62.27	0	3486211..3486960	+	249	114797851	-	HNE_3333	-	putative lipoprotein
3273	 60.76	0	3486957..3487193	+	78	114798596	-	HNE_3334	-	hypothetical protein
3274	 62.28	0	3487288..3487629	+	113	114798929	-	HNE_3335	-	ArsC family protein
3275	 57.64	-1	3487662..3487949	-	95	114799803	-	HNE_3336	-	hypothetical protein
3276	 66.20	+1	3488106..3488537	+	143	114797390	-	HNE_3337	-	hypothetical protein
3277	 62.28	0	3488534..3490426	+	630	114799796	thiC	HNE_3338	-	thiamine biosynthesis protein ThiC
3278	 46.38	-2	3490490..3491263	+	257	114797060	-	HNE_3339	-	hypothetical protein
3279	 65.54	0	3491365..3491541	-	58	114799404	-	HNE_3340	-	hypothetical protein
3280	 61.60	0	3491745..3492119	-	124	114799045	-	HNE_3341	-	hypothetical protein
3281	 64.23	0	3492226..3492348	+	40	114797325	-	HNE_3342	-	hypothetical protein
3282	 64.97	0	3492323..3493147	-	274	114798061	-	HNE_3343	-	Ser/Thr protein phosphatase family protein
3283	 60.94	0	3493248..3494993	-	581	114800286	-	HNE_3344	-	putative lipoprotein
3284	 59.58	0	3495062..3495781	+	239	114799264	-	HNE_3345	-	hypothetical protein
3285	 58.38	-1	3495903..3496433	-	176	114798630	-	HNE_3346	-	hypothetical protein
3286	 68.15	+1	3496498..3497373	-	291	114799859	-	HNE_3347	-	chemotaxis MotA protein
3287	 64.86	0	3497512..3498783	+	423	114798953	-	HNE_3348	-	drug:H+ antiporter-1 family protein
3288	 64.98	0	3498804..3500108	-	434	114799549	-	HNE_3349	-	lytic murein transglycosylase
3289	 53.17	-2	3500252..3500377	+	41	114798781	rpmJ	HNE_3350	-	ribosomal protein L36
3290	 62.56	0	3500409..3501017	+	202	114797582	-	HNE_3351	-	HAD family hydrolase
3291	 63.87	0	3501087..3501623	+	178	114799283	-	HNE_3352	-	TPR repeat-containing protein
3292	 63.82	0	3501629..3502576	+	315	114799194	-	HNE_3353	-	alpha/beta fold family hydrolase
3293	 59.47	0	3502616..3502879	+	87	114798719	-	HNE_3354	-	hypothetical protein
3294	 63.71	0	3502929..3503435	+	168	114800017	-	HNE_3355	-	hypothetical protein
3295	 64.63	0	3503462..3504346	+	294	114797298	-	HNE_3356	-	short chain dehydrogenase/reductase family oxidoreductase
3296	 63.40	0	3504422..3505309	+	295	114798306	-	HNE_3357	-	short chain dehydrogenase/reductase family oxidoreductase
3297	 62.86	0	3505300..3505614	-	104	114797278	-	HNE_3358	-	hypothetical protein
3298	 60.96	0	3505583..3506545	+	320	114800316	-	HNE_3359	-	putative transporter
3299	 66.28	+1	3506694..3507716	+	340	114797778	-	HNE_3360	-	NAD-dependent epimerase/dehydratase family protein
3300	 57.42	-1	3507891..3508355	+	154	114797311	-	HNE_3361	-	putative lipoprotein
3301	 64.76	0	3508592..3509062	-	156	114798616	-	HNE_3362	-	hypothetical protein
3302	 61.72	0	3509068..3509451	-	127	114798847	-	HNE_3363	-	hypothetical protein
3303	 64.77	0	3509561..3510034	-	157	114799534	-	HNE_3364	-	MarR family transcriptional regulator
3304	 63.90	0	3510290..3511120	+	276	114800244	-	HNE_3365	-	chloride peroxidase
3305	 62.86	0	3511193..3511402	-	69	114797835	-	HNE_3366	-	hypothetical protein
3306	 66.11	+1	3511506..3512399	+	297	114798607	-	HNE_3367	-	M48B family peptidase
3307	 69.34	+1	3512431..3513702	+	423	114799841	-	HNE_3368	-	putative ribosomal RNA small subunit methyltransferase B
3308	 66.05	+1	3513822..3514310	+	162	114798828	-	HNE_3369	-	putative lipoprotein
3309	 62.93	0	3514452..3515120	+	222	114797584	rpe	HNE_3370	-	ribulose-phosphate 3-epimerase
3310	 67.48	+1	3515148..3516875	+	575	114797226	-	HNE_3371	-	heparinase II/III-like family protein
3311	 66.79	+1	3516969..3518558	+	529	114797222	purH	HNE_3372	-	bifunctional purine biosynthesis protein PurH
3312	 47.92	-2	3518642..3518929	+	95	114797976	-	HNE_3373	-	putative lipoprotein
3313	 67.33	+1	3519321..3520220	-	299	114800467	-	HNE_3374	-	putative hydroxymethylglutaryl-CoA lyase
3314	 65.58	0	3520228..3521058	-	276	114797855	-	HNE_3375	-	enoyl-CoA hydratase
3315	 64.90	0	3521179..3521574	+	131	114797571	-	HNE_3376	-	phosphoribosyl-AMP cyclohydrolase
3316	 62.25	0	3521600..3522505	+	301	114799156	-	HNE_3377	-	metallo-beta-lactamase family lipoprotein
3317	 64.66	0	3522495..3524141	-	548	114798755	-	HNE_3378	-	hypothetical protein
3318	 63.26	0	3524229..3525929	-	566	114800342	-	HNE_3379	-	isobutyryl-CoA dehydrogenase
3319	 64.96	0	3526058..3526876	-	272	114799744	-	HNE_3380	-	short chain dehydrogenase/reductase family oxidoreductase
3320	 62.65	0	3527048..3529534	+	828	114798760	-	HNE_3381	-	TonB-dependent receptor
3321	 65.34	0	3529672..3530499	+	275	114799337	-	HNE_3382	-	alpha/beta fold family hydrolase
3322	 63.17	0	3530504..3531475	-	323	114799917	-	HNE_3383	-	putative cyclase
3323	 67.19	+1	3531540..3532487	-	315	114797490	-	HNE_3384	-	hypothetical protein
3324	 68.63	+1	3532547..3533515	+	322	114798838	ada	HNE_3385	-	ADA regulatory protein
3325	 63.62	0	3533598..3534056	+	152	114800513	-	HNE_3386	-	hypothetical protein
3326	 65.40	0	3534053..3534526	+	157	114797712	-	HNE_3387	-	putative lactoylglutathione lyase
3327	 66.67	+1	3534658..3535182	-	174	114798562	hpt	HNE_3388	-	hypoxanthine phosphoribosyltransferase
3328	 64.66	0	3535188..3535934	-	248	114799317	-	HNE_3389	-	MJ0042 family finger-like domain-containing protein
3329	 65.88	+1	3536001..3536759	+	252	114797092	ftsE	HNE_3390	-	cell division ATP-binding protein FtsE
3330	 70.45	+2	3536756..3537628	+	290	114797852	-	HNE_3391	-	putative permease
3331	 61.94	0	3537674..3538414	+	246	114798585	-	HNE_3392	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
3332	 65.58	0	3538411..3539052	+	213	114799381	-	HNE_3393	-	putative DNA-3-methyladenine glycosylase
3333	 62.12	0	3539176..3539769	+	197	114800298	-	HNE_3394	-	HNH endonuclease domain-containing protein
3334	 65.32	0	3539742..3541592	-	616	114800135	-	HNE_3395	-	dolichyl-phosphate-mannose-protein mannosyltransferase
3335	 64.33	0	3541774..3542544	+	256	114799537	-	HNE_3396	-	glycosyl transferase, group 2 family protein
3336	 63.02	0	3542551..3543291	-	246	114798829	-	HNE_3397	-	SCO1/SenC family protein
3337	 65.72	0	3543239..3544606	+	455	114799590	-	HNE_3398	-	sensor histidine kinase
3338	 63.53	0	3544666..3545238	+	190	114797184	regA	HNE_3399	-	DNA-binding response regulator RegA
3339	 63.69	0	3545242..3546183	-	313	114798739	-	HNE_3400	-	prephenate dehydrogenase
3340	 63.85	0	3546307..3546696	+	129	114797487	-	HNE_3401	-	hypothetical protein
3341	 59.87	0	3546911..3547381	+	156	114800276	-	HNE_3402	-	hypothetical protein
3342	 57.87	-1	3547412..3548002	-	196	114798839	phaR	HNE_3403	-	polyhydroxyalkanoate synthesis repressor PhaR
3343	 60.61	0	3548159..3548884	+	241	114798054	phbB	HNE_3404	-	acetoacetyl-CoA reductase
3344	 66.00	+1	3548996..3549445	-	149	114798676	-	HNE_3405	-	hypothetical protein
3345	 60.44	0	3549445..3550215	-	256	114797885	-	HNE_3406	-	putative hydroxyacylglutathione hydrolase
3346	 68.28	+1	3550272..3551015	+	247	114800073	-	HNE_3407	-	hypothetical protein
3347	 61.74	0	3551080..3551424	+	114	114799395	-	HNE_3408	-	nitrogen regulatory protein P-II
3348	 64.66	0	3551484..3552680	-	398	114798169	-	HNE_3409	-	M23 family peptidase
3349	 64.71	0	3552680..3553345	-	221	114797716	-	HNE_3410	-	putative lipoprotein
3350	 67.27	+1	3553342..3554001	-	219	114797973	-	HNE_3411	-	hypothetical protein
3351	 64.29	0	3554003..3556321	-	772	114799165	-	HNE_3412	-	subtilase family protein
3352	 59.65	0	3556432..3556887	-	151	114798107	-	HNE_3413	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.