IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
276	 61.32	0	264638..266413	-	591	114797349	-	HNE_0279	-	putative diguanylate cyclase
277	 59.75	0	266410..266973	-	187	114799435	-	HNE_0280	-	GAF domain-containing protein
278	 62.31	0	267448..268089	-	213	114799169	-	HNE_0281	-	ECF subfamily RNA polymerase sigma factor
279	 59.59	0	270096..270533	-	145	114799499	-	HNE_0283	-	hypothetical protein
280	 53.69	-2	271099..273480	-	793	114798348	-	HNE_0284	-	hypothetical protein
281	 51.96	-2	273437..275680	-	747	114797220	-	HNE_0285	-	hypothetical protein
282	 57.75	-1	277020..278174	-	384	114799924	-	HNE_0286	-	DNA-binding protein
283	 57.26	-1	278171..279541	-	456	114799235	-	HNE_0287	-	hypothetical protein
284	 58.29	-1	279534..280094	-	186	114798126	-	HNE_0288	-	hypothetical protein
285	 58.09	-1	280516..281541	+	341	114797203	-	HNE_0289	-	hypothetical protein
286	 53.12	-2	281535..282287	+	250	114799916	-	HNE_0290	-	hypothetical protein
287	 52.54	-2	282297..282572	+	91	114798239	-	HNE_0291	-	hypothetical protein
288	 62.81	0	282583..283644	-	353	114799242	-	HNE_0292	-	phage integrase family site specific recombinase
289	 61.80	0	283755..284741	+	328	114799763	dusA	HNE_0293	-	tRNA-dihydrouridine synthase A
290	 65.73	0	284928..286418	+	496	114799463	-	HNE_0294	-	sensor histidine kinase/response regulator
291	 64.02	0	286415..288151	+	578	114800449	-	HNE_0295	-	putative muropeptide permease AmpG
292	 61.86	0	288170..290437	-	755	114797897	maeB	HNE_0296	-	malic enzyme
293	 65.77	0	290586..293258	+	890	114798005	mutS	HNE_0297	-	DNA mismatch repair protein MutS
294	 58.37	-1	293255..293941	-	228	114799878	-	HNE_0298	-	glyoxalase family protein
295	 63.08	0	294162..295220	+	352	114797344	-	HNE_0299	-	alpha/beta fold family hydrolase
296	 65.93	+1	295227..295631	-	134	114798356	-	HNE_0300	-	putative lipoprotein
297	 63.62	0	295659..296609	-	316	114797474	gshB	HNE_0301	-	glutathione synthetase
298	 60.42	0	296677..297396	-	239	114798138	-	HNE_0302	-	phospholipid-binding protein
299	 59.67	0	297745..297987	+	80	114798826	-	HNE_0303	-	iojap-like protein
300	 67.10	+1	297992..298456	+	154	114797356	-	HNE_0304	-	hypothetical protein
301	 63.77	0	298538..299851	+	437	114798052	-	HNE_0305	-	TRAP transporter solute receptor TAXI family protein
302	 62.79	0	299869..300744	-	291	114798849	-	HNE_0306	-	LytTr DNA-binding domain-containing protein
303	 61.36	0	300955..301350	+	131	114797842	-	HNE_0307	-	hypothetical protein
304	 63.16	0	301420..302646	+	408	114797837	-	HNE_0308	-	alkaline phosphatase-like protein
305	 66.51	+1	302686..303930	+	414	114798591	-	HNE_0309	-	major facilitator family transporter
306	 59.63	0	304074..305267	+	397	114799396	sucC	HNE_0310	-	succinyl-CoA synthetase, beta subunit
307	 60.69	0	305272..306174	+	300	114798328	sucD	HNE_0311	-	succinyl-CoA synthetase subunit alpha
308	 62.51	0	306324..309332	+	1002	114800323	kgd	HNE_0312	-	alpha-ketoglutarate decarboxylase
309	 62.86	0	309362..310912	+	516	114799329	sucB	HNE_0313	-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
310	 61.62	0	310909..311622	-	237	114799483	-	HNE_0314	-	hypothetical protein
311	 62.54	0	311781..312653	+	290	114798543	-	HNE_0315	-	glutathione S-transferase
312	 65.64	0	312657..313634	+	325	114797156	-	HNE_0316	-	hypothetical protein
313	 63.48	0	313726..314070	+	114	114797698	-	HNE_0317	-	putative chorismate mutase, type II
314	 68.48	+1	314031..314417	-	128	114800541	-	HNE_0318	-	hypothetical protein
315	 59.03	0	314588..314731	+	47	114800204	-	HNE_0319	-	hypothetical protein
316	 69.37	+1	314814..316808	+	664	114798902	-	HNE_0320	-	hypothetical protein
317	 65.92	+1	316818..317750	-	310	114798673	-	HNE_0321	-	LysR family transcriptional regulator
318	 68.39	+1	317859..319310	+	483	114800230	cysG	HNE_0322	-	siroheme synthase
319	 64.81	0	319307..319630	+	107	114797102	-	HNE_0323	-	hypothetical protein
320	 63.14	0	319630..320253	+	207	114798341	-	HNE_0324	-	glutathione S-transferase
321	 62.87	0	320253..321911	+	552	114798651	-	HNE_0325	-	putative sulfite reductase
322	 61.28	0	321898..322380	+	160	114799901	-	HNE_0326	-	hypothetical protein
323	 63.54	0	322398..323132	+	244	114798004	cysH	HNE_0327	-	phosphoadenosine phosphosulfate reductase
324	 67.41	+1	323239..324048	-	269	114799577	-	HNE_0328	-	RNA methyltransferase
325	 62.76	0	324079..324411	-	110	114800064	-	HNE_0329	-	hypothetical protein
326	 60.65	0	324491..325387	-	298	114797392	rpoH	HNE_0330	-	RNA polymerase factor sigma-32
327	 64.39	0	325779..326921	-	380	114798141	-	HNE_0331	-	AFG1 family ATPase
328	 59.51	0	326937..327551	-	204	114799025	-	HNE_0332	-	S54 family peptidase
329	 62.89	0	327659..328108	-	149	114799030	-	HNE_0333	-	response regulator receiver domain-containing protein
330	 51.85	-2	328188..328322	+	44	114798280	-	HNE_0334	-	hypothetical protein
331	 63.25	0	328339..329244	+	301	114800146	-	HNE_0335	-	acyltransferase domain-containing protein
332	 65.04	0	329316..329807	+	163	114799412	-	HNE_0336	-	acetyltransferase
333	 64.37	0	329928..331277	+	449	114798518	-	HNE_0337	-	peptide-acetyl-coenzyme A transporter (PAT) family protein
334	 66.96	+1	331302..333341	-	679	114797790	-	HNE_0338	-	hypothetical protein
335	 69.69	+2	333338..336214	-	958	114800527	-	HNE_0339	-	hypothetical protein
336	 68.97	+1	336211..337077	-	288	114797646	-	HNE_0340	-	hypothetical protein
337	 66.41	+1	337074..337463	-	129	114798095	-	HNE_0341	-	putative lipoprotein
338	 66.57	+1	337460..338458	-	332	114799543	-	HNE_0342	-	AAA family ATPase
339	 60.03	0	338534..339121	+	195	114798915	-	HNE_0343	-	hypothetical protein
340	 63.62	0	339131..339754	+	207	114799866	-	HNE_0344	-	NUDIX family hydrolase
341	 64.96	0	339839..340189	+	116	114798320	-	HNE_0345	-	hypothetical protein
342	 69.55	+2	340236..341381	+	381	114799278	-	HNE_0346	-	tRNA nucleotidyltransferase/poly(A) polymerase family protein
343	 57.78	-1	341509..341733	+	74	114800278	-	HNE_0347	-	putative addiction module antidote
344	 64.60	0	341730..342116	+	128	114797849	-	HNE_0348	-	putative addiction module toxin
345	 63.53	0	342121..343014	-	297	114798887	hemF	HNE_0349	-	coproporphyrinogen III oxidase
346	 64.36	0	343216..343779	+	187	114798737	petA	HNE_0350	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
347	 60.64	0	343795..345255	+	486	114797745	-	HNE_0351	-	putative ubiquinol-cytochrome c reductase, cytochrome b
348	 64.27	0	345281..346240	+	319	114797363	-	HNE_0352	-	putative ubiquinol-cytochrome c reductase, cytochrome c1
349	 67.24	+1	346256..346774	+	172	114799462	-	HNE_0353	-	acetyltransferase
350	 66.33	+1	346771..347649	+	292	114798898	mtaP	HNE_0354	-	methylthioadenosine phosphorylase
351	 64.76	0	347721..348719	+	332	114797053	-	HNE_0355	-	hypothetical protein
352	 65.63	0	348691..349173	+	160	114799850	-	HNE_0356	-	putative lipoprotein
353	 64.85	0	349255..349803	-	182	114799643	-	HNE_0357	-	fasciclin domain-containing protein
354	 62.41	0	349930..350493	-	187	114799966	-	HNE_0358	-	fasciclin domain-containing protein
355	 62.36	0	350712..351245	-	177	114800417	-	HNE_0359	-	fasciclin domain-containing protein
356	 66.24	+1	351455..352165	+	236	114797950	-	HNE_0360	-	DnaJ family molecular chaperone
357	 73.33	+2	352256..352540	+	94	114798970	-	HNE_0361	-	hypothetical protein
358	 59.74	0	352622..353560	-	312	114799706	prs	HNE_0362	-	ribose-phosphate pyrophosphokinase
359	 66.27	+1	353684..354448	-	254	114797428	-	HNE_0363	-	hypothetical protein
360	 62.08	0	354630..356462	+	610	114798286	typA	HNE_0364	-	GTP-binding protein TypA
361	 63.73	0	356489..356863	-	124	114799547	-	HNE_0365	-	putative lipoprotein
362	 58.06	-1	357030..357215	+	61	114799103	-	HNE_0366	-	hypothetical protein
363	 67.92	+1	357286..358482	-	398	114799607	-	HNE_0367	-	hypothetical protein
364	 62.90	0	358788..359132	-	114	114799937	-	HNE_0368	-	hypothetical protein
365	 68.29	+1	359705..360382	+	225	114799208	-	HNE_0369	-	hypothetical protein
366	 66.01	+1	360379..360984	-	201	114799985	recR	HNE_0370	-	recombination protein RecR
367	 62.35	0	361108..361431	-	107	114797665	-	HNE_0371	-	hypothetical protein
368	 66.67	+1	361448..363184	-	578	114798398	dnaX	HNE_0372	-	DNA polymerase III, subunits gamma and tau
369	 59.54	0	363300..364337	-	345	114799612	nrdF	HNE_0373	-	ribonucleotide-diphosphate reductase subunit beta
370	 65.35	0	364480..365775	-	431	114800371	-	HNE_0374	-	hypothetical protein
371	 65.16	0	366022..366948	-	308	114797409	-	HNE_0375	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
372	 57.77	-1	367177..370086	+	969	114800129	-	HNE_0376	-	PKD domain-containing protein
373	 63.00	0	370160..370432	-	90	114797658	-	HNE_0377	-	TM2 domain-containing protein
374	 58.74	0	370629..370994	-	121	114800392	-	HNE_0378	-	PRC-barrel domain-containing protein
375	 65.27	0	371146..372003	+	285	114799616	-	HNE_0379	-	putative ribosomal protein L11 methyltransferase PrmA
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.