IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3181	 66.00	+1	3410675..3412318	-	547	114797251	-	HNE_3242	-	hypothetical protein
3182	 64.91	0	3412514..3412912	+	132	114798487	sdhC	HNE_3243	-	succinate dehydrogenase, cytochrome b556 subunit
3183	 63.85	0	3412923..3413312	+	129	114799518	sdhD	HNE_3244	-	succinate dehydrogenase, hydrophobic membrane anchor protein
3184	 63.81	0	3413339..3415126	+	595	114798098	sdhA	HNE_3245	-	succinate dehydrogenase flavoprotein subunit
3185	 57.33	-1	3415160..3415459	+	99	114799101	-	HNE_3246	-	hypothetical protein
3186	 61.05	0	3415494..3416276	+	260	114799946	sdhB	HNE_3247	-	succinate dehydrogenase iron-sulfur subunit
3187	 67.63	+1	3416546..3417484	+	312	114797183	-	HNE_3248	-	ISHne3, transposase
3188	 65.66	0	3417711..3418109	+	132	114799532	-	HNE_3249	-	hypothetical protein
3189	 49.33	-2	3418314..3418613	+	99	114800529	-	HNE_3250	-	hypothetical protein
3190	 56.80	-1	3418733..3419026	+	97	114797497	-	HNE_3251	-	hypothetical protein
3191	 61.85	0	3419055..3419303	-	82	114798634	-	HNE_3252	-	hypothetical protein
3192	 64.53	0	3419300..3420187	-	295	114799083	-	HNE_3253	-	putative FolD bifunctional protein
3193	 67.67	+1	3420168..3420467	-	99	114798070	-	HNE_3254	-	hypothetical protein
3194	 59.87	0	3420489..3420797	-	102	114797565	-	HNE_3255	-	hypothetical protein
3195	 66.08	+1	3420990..3422183	+	397	114800188	-	HNE_3256	-	major facilitator family transporter
3196	 66.16	+1	3422336..3423523	+	395	114800147	-	HNE_3257	-	major facilitator family transporter
3197	 67.35	+1	3423520..3424251	-	243	114799477	-	HNE_3258	-	putative lipoprotein
3198	 62.14	0	3424306..3425079	-	257	114798449	-	HNE_3259	-	short chain dehydrogenase
3199	 66.21	+1	3425220..3425870	+	216	114797701	-	HNE_3260	-	hypothetical protein
3200	 62.81	0	3425939..3426301	+	120	114797190	-	HNE_3261	-	hypothetical protein
3201	 62.61	0	3426395..3427798	+	467	114797713	lpdA2	HNE_3262	-	dihydrolipoamide dehydrogenase
3202	 65.76	0	3427821..3428372	+	183	114798792	-	HNE_3263	-	acetyltransferase
3203	 62.63	0	3428377..3429714	+	445	114799334	-	HNE_3264	-	hypothetical protein
3204	 57.14	-1	3429721..3429951	-	76	114800220	-	HNE_3265	-	hypothetical protein
3205	 66.67	+1	3430013..3430216	-	67	114797838	-	HNE_3266	-	hypothetical protein
3206	 66.67	+1	3430329..3430784	-	151	114798633	dut	HNE_3267	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3207	 64.96	0	3430830..3432056	-	408	114799868	coaBC	HNE_3268	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
3208	 67.57	+1	3432173..3432505	-	110	114800496	-	HNE_3269	-	hypothetical protein
3209	 60.18	0	3432635..3433081	-	148	114799461	-	HNE_3270	-	hypothetical protein
3210	 65.49	0	3433142..3434665	-	507	114798427	ubiB	HNE_3271	-	2-polyprenylphenol 6-hydroxylase
3211	 53.25	-2	3434685..3434915	+	76	114800138	-	HNE_3272	-	hypothetical protein
3212	 62.61	0	3434927..3435715	-	262	114800122	ubiE	HNE_3273	-	ubiquinone/menaquinone biosynthesis methyltransferase UbiE
3213	 62.98	0	3435714..3436607	+	297	114799193	mutM	HNE_3274	-	formamidopyrimidine-DNA glycosylase
3214	 68.33	+1	3436604..3437806	-	400	114798759	-	HNE_3275	-	FAD-dependent oxidoreductase
3215	 62.20	0	3437881..3438843	-	320	114797186	-	HNE_3276	-	hypothetical protein
3216	 65.19	0	3438916..3440067	-	383	114800111	-	HNE_3277	-	putative hydrolase NrgC
3217	 64.54	0	3440070..3441809	-	579	114797081	-	HNE_3278	-	amidohydrolase family protein
3218	 63.82	0	3441884..3442234	-	116	114800031	-	HNE_3279	-	hypothetical protein
3219	 65.04	0	3442231..3443337	-	368	114799851	-	HNE_3280	-	hypothetical protein
3220	 65.99	+1	3443354..3444241	-	295	114798845	-	HNE_3281	-	acyltransferase domain-containing protein
3221	 64.51	0	3444241..3445401	-	386	114797258	-	HNE_3282	-	acyl-CoA dehydrogenase
3222	 59.48	0	3445416..3446333	-	305	114799570	metA	HNE_3283	-	homoserine O-succinyltransferase
3223	 62.12	0	3446538..3447350	-	270	114800473	-	HNE_3284	-	enoyl-CoA hydratase/isomerase domain-containing protein
3224	 61.14	0	3447492..3448142	+	216	114797158	-	HNE_3285	-	ExoD family protein
3225	 66.09	+1	3448157..3448504	+	115	114798128	-	HNE_3286	-	hypothetical protein
3226	 64.54	0	3448581..3449519	+	312	114797225	fabK	HNE_3287	-	trans-2-enoyl-ACP reductase II
3227	 61.94	0	3449649..3451829	+	726	114797980	dcp	HNE_3288	-	peptidyl-dipeptidase
3228	 66.67	+1	3451907..3452374	-	155	114799188	-	HNE_3289	-	sugar phosphotransferase system (PTS),mannose/fructose family protein
3229	 58.79	0	3452401..3452997	-	198	114800119	-	HNE_3290	-	hypothetical protein
3230	 61.99	0	3453225..3455342	-	705	114797169	-	HNE_3291	-	hypothetical protein
3231	 65.67	0	3455430..3456536	-	368	114799167	pspF	HNE_3292	-	psp operon transcription activator
3232	 63.54	0	3456687..3456878	+	63	114800010	-	HNE_3293	-	hypothetical protein
3233	 63.14	0	3456904..3457584	+	226	114797618	pspA	HNE_3294	-	phage shock protein A
3234	 65.12	0	3457698..3457955	+	85	114798410	pspB	HNE_3295	-	phage shock protein B
3235	 60.19	0	3457967..3458383	+	138	114798290	pspC	HNE_3296	-	phage shock protein C
3236	 58.06	-1	3458431..3458616	+	61	114797327	-	HNE_3297	-	hypothetical protein
3237	 67.66	+1	3458613..3460433	-	606	114799736	-	HNE_3298	-	FAD dependent oxidoreductase domain-containing protein
3238	 65.62	0	3460578..3460865	+	95	114799528	-	HNE_3299	-	hypothetical protein
3239	 62.65	0	3460891..3461139	+	82	114798729	-	HNE_3300	-	hypothetical protein
3240	 64.16	0	3461136..3461414	+	92	114797501	-	HNE_3301	-	hypothetical protein
3241	 62.00	0	3461419..3461868	+	149	114800294	-	HNE_3302	-	hypothetical protein
3242	 65.12	0	3461923..3462246	+	107	114799919	-	HNE_3303	-	ArsR family transcriptional regulator
3243	 61.64	0	3462243..3462461	+	72	114799160	-	HNE_3304	-	hypothetical protein
3244	 57.98	-1	3462468..3462893	+	141	114798014	-	HNE_3305	-	hypothetical protein
3245	 56.47	-1	3462890..3463291	+	133	114797620	-	HNE_3306	-	hypothetical protein
3246	 63.66	0	3463288..3463686	+	132	114798569	-	HNE_3307	-	hypothetical protein
3247	 67.33	+1	3463731..3464630	+	299	114798167	-	HNE_3308	-	putative tyrosine recombinase XerC
3248	 64.62	0	3464637..3465809	-	390	114797411	-	HNE_3309	-	putative oxygen-independent coproporphyrinogen III oxidase
3249	 61.04	0	3465806..3466462	-	218	114800076	rdgB	HNE_3310	-	non-canonical purine NTP pyrophosphatase
3250	 64.65	0	3466585..3467079	+	164	114799603	-	HNE_3311	-	hypothetical protein
3251	 63.75	0	3467095..3467334	+	79	114799014	-	HNE_3312	-	DNA-binding protein
3252	 56.98	-1	3467388..3468068	+	226	114797623	-	HNE_3313	-	putative satD protein
3253	 56.15	-1	3468055..3468444	+	129	114800112	-	HNE_3314	-	hypothetical protein
3254	 65.29	0	3468445..3469170	-	241	114798422	rph	HNE_3315	-	ribonuclease PH
3255	 64.33	0	3469261..3470931	+	556	114799647	fhs	HNE_3316	-	formate--tetrahydrofolate ligase
3256	 66.76	+1	3470977..3472065	+	362	114800305	hrcA	HNE_3317	-	heat-inducible transcription repressor
3257	 66.14	+1	3472065..3472631	+	188	114797336	grpE	HNE_3318	-	co-chaperone GrpE
3258	 67.54	+1	3472650..3473570	-	306	114797965	-	HNE_3319	-	hypothetical protein
3259	 67.06	+1	3473667..3473918	-	83	114799170	-	HNE_3320	-	hypothetical protein
3260	 61.81	0	3474210..3476105	+	631	114798319	dnaK	HNE_3321	-	chaperone protein DnaK
3261	 65.05	0	3476261..3476878	+	205	114798065	-	HNE_3322	-	hypothetical protein
3262	 62.53	0	3476925..3477914	-	329	114798574	-	HNE_3323	-	putative quinone oxidoreductase
3263	 67.24	+1	3478012..3478884	+	290	114800051	-	HNE_3324	-	putative asparaginase
3264	 62.93	0	3478881..3479201	+	106	114797073	-	HNE_3325	-	hypothetical protein
3265	 62.17	0	3479201..3479734	+	177	114798567	-	HNE_3326	-	RNA methyltransferase
3266	 61.93	0	3479756..3480430	-	224	114799135	-	HNE_3327	-	ChR family anti-sigma factor
3267	 60.81	0	3480520..3481065	-	181	114798215	-	HNE_3328	-	ECF subfamily RNA polymerase sigma factor
3268	 59.74	0	3481255..3481788	+	177	114799447	-	HNE_3329	-	hypothetical protein
3269	 63.99	0	3481862..3482497	-	211	114800290	-	HNE_3330	-	OmpA family protein
3270	 61.43	0	3482686..3483849	+	387	114797352	-	HNE_3331	-	radical SAM protein
3271	 64.07	0	3483860..3486091	-	743	114800151	-	HNE_3332	-	putative transporter
3272	 62.27	0	3486211..3486960	+	249	114797851	-	HNE_3333	-	putative lipoprotein
3273	 60.76	0	3486957..3487193	+	78	114798596	-	HNE_3334	-	hypothetical protein
3274	 62.28	0	3487288..3487629	+	113	114798929	-	HNE_3335	-	ArsC family protein
3275	 57.64	-1	3487662..3487949	-	95	114799803	-	HNE_3336	-	hypothetical protein
3276	 66.20	+1	3488106..3488537	+	143	114797390	-	HNE_3337	-	hypothetical protein
3277	 62.28	0	3488534..3490426	+	630	114799796	thiC	HNE_3338	-	thiamine biosynthesis protein ThiC
3278	 46.38	-2	3490490..3491263	+	257	114797060	-	HNE_3339	-	hypothetical protein
3279	 65.54	0	3491365..3491541	-	58	114799404	-	HNE_3340	-	hypothetical protein
3280	 61.60	0	3491745..3492119	-	124	114799045	-	HNE_3341	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.