IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3111	 69.70	+2	3346363..3347121	-	252	114797458	-	HNE_3170	-	ComF family protein
3112	 66.23	+1	3347132..3348043	+	303	114800231	-	HNE_3171	-	hypothetical protein
3113	 59.44	0	3348051..3348230	-	59	114797894	-	HNE_3172	-	flp/Fap pilus protein
3114	 63.07	0	3348230..3348646	-	138	114797108	-	HNE_3173	-	putative mutator mutT protein
3115	 65.55	0	3348643..3349893	-	416	114798075	argJ	HNE_3174	-	arginine biosynthesis bifunctional protein ArgJ
3116	 63.05	0	3349890..3350801	-	303	114799826	-	HNE_3175	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
3117	 62.00	0	3350983..3353748	+	921	114797726	secA	HNE_3176	-	preprotein translocase, SecA subunit
3118	 69.57	+2	3353715..3354266	+	183	114799915	-	HNE_3177	-	hypothetical protein
3119	 69.22	+1	3354429..3355367	-	312	114797168	-	HNE_3178	-	hypothetical protein
3120	 60.04	0	3355564..3356574	+	336	114798520	gap	HNE_3179	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3121	 63.24	0	3356687..3357883	+	398	114799328	pgk	HNE_3180	-	phosphoglycerate kinase
3122	 61.19	0	3357986..3358879	+	297	114797979	fda	HNE_3181	-	fructose-1,6-bisphosphate aldolase
3123	 62.96	0	3358987..3359283	+	98	114798750	-	HNE_3182	-	hypothetical protein
3124	 65.37	0	3359295..3359525	+	76	114799812	-	HNE_3183	-	hypothetical protein
3125	 62.64	0	3359559..3359831	-	90	114797287	-	HNE_3184	-	hypothetical protein
3126	 66.97	+1	3359940..3360605	+	221	114797291	thiE	HNE_3185	-	thiamine-phosphate pyrophosphorylase
3127	 59.60	0	3360625..3360921	-	98	114798326	-	HNE_3186	-	hypothetical protein
3128	 64.84	0	3361091..3361912	+	273	114797941	suhB	HNE_3187	-	inositol-1-monophosphatase
3129	 60.67	0	3362042..3363541	+	499	114800504	-	HNE_3188	-	hypothetical protein
3130	 68.03	+1	3363833..3364417	+	194	114799920	-	HNE_3189	-	hypothetical protein
3131	 64.88	0	3364547..3365722	+	391	114798588	-	HNE_3190	-	ISHne2, transposase
3132	 58.20	-1	3365876..3366064	+	62	114797847	-	HNE_3191	-	hypothetical protein
3133	 66.50	+1	3366046..3367878	-	610	114798592	-	HNE_3192	-	efflux ABC transporter, permease/ATP-binding protein
3134	 59.36	0	3368052..3368270	+	72	114800232	rpmE	HNE_3193	-	ribosomal protein L31
3135	 61.83	0	3368344..3369150	-	268	114799372	-	HNE_3194	-	glycosyl transferase, group 2 family protein
3136	 63.47	0	3369147..3370430	-	427	114797140	-	HNE_3195	-	putative O-antigen polymerase
3137	 62.11	0	3370437..3372410	-	657	114799933	thrS	HNE_3196	-	threonyl-tRNA synthetase
3138	 67.91	+1	3372681..3373001	-	106	114798636	-	HNE_3197	-	hypothetical protein
3139	 64.41	0	3373001..3373444	-	147	114799469	-	HNE_3198	-	hypothetical protein
3140	 61.67	0	3373637..3374257	-	206	114800206	-	HNE_3199	-	ExoD family protein
3141	 61.65	0	3374254..3374811	-	185	114797483	-	HNE_3200	-	phosphoglycerate mutase family protein
3142	 62.05	0	3374796..3376181	-	461	114797963	cysS	HNE_3201	-	cysteinyl-tRNA synthetase
3143	 58.87	0	3376206..3376436	+	76	114799006	-	HNE_3202	-	hypothetical protein
3144	 58.62	0	3376545..3377165	+	206	114797723	folE	HNE_3203	-	GTP cyclohydrolase I
3145	 64.17	0	3377229..3377948	-	239	114798758	-	HNE_3204	-	hypothetical protein
3146	 58.83	0	3377959..3378864	-	301	114797757	-	HNE_3205	-	putative branched-chain amino acid aminotransferase
3147	 59.19	0	3378888..3379649	-	253	114798796	-	HNE_3206	-	hypothetical protein
3148	 62.40	0	3379671..3380186	-	171	114800548	-	HNE_3207	-	NUDIX family hydrolase
3149	 62.25	0	3380183..3381472	-	429	114799786	-	HNE_3208	-	hypothetical protein
3150	 61.63	0	3381599..3382948	-	449	114798612	-	HNE_3209	-	carboxyl-terminal protease
3151	 61.25	0	3382981..3384216	-	411	114797629	-	HNE_3210	-	M23 family peptidase
3152	 65.20	0	3384234..3384848	-	204	114799936	-	HNE_3211	-	hypothetical protein
3153	 64.74	0	3384975..3385286	+	103	114799190	-	HNE_3212	-	hypothetical protein
3154	 60.94	0	3385406..3385702	+	98	114797972	-	HNE_3213	-	hypothetical protein
3155	 60.79	0	3385812..3386441	-	209	114797231	-	HNE_3214	-	hypothetical protein
3156	 64.81	0	3386512..3387051	-	179	114799548	-	HNE_3215	-	acetyltransferase
3157	 59.43	0	3387065..3387520	-	151	114798394	-	HNE_3216	-	putative lipoprotein
3158	 63.70	0	3387610..3387912	-	100	114798959	-	HNE_3217	-	antibiotic biosynthesis monooxygenase domain-containing protein
3159	 62.20	0	3387921..3388883	-	320	114799989	mdh	HNE_3218	-	malate dehydrogenase
3160	 60.85	0	3389030..3389803	-	257	114797078	-	HNE_3219	-	hypothetical protein
3161	 57.06	-1	3390182..3390514	+	110	114798253	-	HNE_3220	-	hypothetical protein
3162	 64.88	0	3390587..3391147	+	186	114799686	-	HNE_3221	-	2'-5' RNA ligase
3163	 61.77	0	3391323..3391955	+	210	114800438	-	HNE_3223	-	ExoD family protein
3164	 65.13	0	3392005..3392523	+	172	114797603	-	HNE_3224	-	hypothetical protein
3165	 62.29	0	3392543..3393706	-	387	114798370	-	HNE_3225	-	acyl-CoA dehydrogenase family protein
3166	 59.67	0	3393819..3395690	-	623	114800038	-	HNE_3226	-	putative lipoprotein
3167	 66.15	+1	3395793..3396758	+	321	114797250	hemC	HNE_3227	-	porphobilinogen deaminase
3168	 69.47	+2	3396755..3397468	+	237	114800364	hemD	HNE_3228	-	uroporphyrinogen-III synthase
3169	 67.04	+1	3397538..3398611	+	357	114799645	-	HNE_3229	-	hypothetical protein
3170	 67.29	+1	3398617..3400053	+	478	114798425	-	HNE_3230	-	HemY domain-containing protein
3171	 65.82	+1	3400244..3400954	+	236	114797653	-	HNE_3232	-	short chain dehydrogenase/reductase family oxidoreductase
3172	 63.61	0	3400965..3401783	-	272	114797308	-	HNE_3233	-	PhzF family phenazine biosynthesis protein
3173	 67.77	+1	3401871..3402689	-	272	114799777	thiD	HNE_3234	-	phosphomethylpyrimidine kinase
3174	 60.06	0	3402695..3403345	-	216	114799016	-	HNE_3235	-	putative transaldolase
3175	 59.57	0	3403379..3404689	-	436	114798680	-	HNE_3236	-	UDP-glucose dehydrogenase
3176	 63.00	0	3404841..3405467	+	208	114799400	-	HNE_3237	-	glutathione S-transferase
3177	 61.13	0	3405496..3407013	-	505	114798536	-	HNE_3238	-	putative phosphoglucomutase/phosphomannomutase
3178	 64.12	0	3407233..3408018	+	261	114798145	-	HNE_3239	-	surface antigen family protein
3179	 65.16	0	3408015..3408746	-	243	114799238	-	HNE_3240	-	class I glutamine amidotransferase domain-containing protein
3180	 62.49	0	3408743..3410611	-	622	114799785	-	HNE_3241	-	putative multidrug ABC transporter, permease/ATP-binding protein
3181	 66.00	+1	3410675..3412318	-	547	114797251	-	HNE_3242	-	hypothetical protein
3182	 64.91	0	3412514..3412912	+	132	114798487	sdhC	HNE_3243	-	succinate dehydrogenase, cytochrome b556 subunit
3183	 63.85	0	3412923..3413312	+	129	114799518	sdhD	HNE_3244	-	succinate dehydrogenase, hydrophobic membrane anchor protein
3184	 63.81	0	3413339..3415126	+	595	114798098	sdhA	HNE_3245	-	succinate dehydrogenase flavoprotein subunit
3185	 57.33	-1	3415160..3415459	+	99	114799101	-	HNE_3246	-	hypothetical protein
3186	 61.05	0	3415494..3416276	+	260	114799946	sdhB	HNE_3247	-	succinate dehydrogenase iron-sulfur subunit
3187	 67.63	+1	3416546..3417484	+	312	114797183	-	HNE_3248	-	ISHne3, transposase
3188	 65.66	0	3417711..3418109	+	132	114799532	-	HNE_3249	-	hypothetical protein
3189	 49.33	-2	3418314..3418613	+	99	114800529	-	HNE_3250	-	hypothetical protein
3190	 56.80	-1	3418733..3419026	+	97	114797497	-	HNE_3251	-	hypothetical protein
3191	 61.85	0	3419055..3419303	-	82	114798634	-	HNE_3252	-	hypothetical protein
3192	 64.53	0	3419300..3420187	-	295	114799083	-	HNE_3253	-	putative FolD bifunctional protein
3193	 67.67	+1	3420168..3420467	-	99	114798070	-	HNE_3254	-	hypothetical protein
3194	 59.87	0	3420489..3420797	-	102	114797565	-	HNE_3255	-	hypothetical protein
3195	 66.08	+1	3420990..3422183	+	397	114800188	-	HNE_3256	-	major facilitator family transporter
3196	 66.16	+1	3422336..3423523	+	395	114800147	-	HNE_3257	-	major facilitator family transporter
3197	 67.35	+1	3423520..3424251	-	243	114799477	-	HNE_3258	-	putative lipoprotein
3198	 62.14	0	3424306..3425079	-	257	114798449	-	HNE_3259	-	short chain dehydrogenase
3199	 66.21	+1	3425220..3425870	+	216	114797701	-	HNE_3260	-	hypothetical protein
3200	 62.81	0	3425939..3426301	+	120	114797190	-	HNE_3261	-	hypothetical protein
3201	 62.61	0	3426395..3427798	+	467	114797713	lpdA2	HNE_3262	-	dihydrolipoamide dehydrogenase
3202	 65.76	0	3427821..3428372	+	183	114798792	-	HNE_3263	-	acetyltransferase
3203	 62.63	0	3428377..3429714	+	445	114799334	-	HNE_3264	-	hypothetical protein
3204	 57.14	-1	3429721..3429951	-	76	114800220	-	HNE_3265	-	hypothetical protein
3205	 66.67	+1	3430013..3430216	-	67	114797838	-	HNE_3266	-	hypothetical protein
3206	 66.67	+1	3430329..3430784	-	151	114798633	dut	HNE_3267	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3207	 64.96	0	3430830..3432056	-	408	114799868	coaBC	HNE_3268	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
3208	 67.57	+1	3432173..3432505	-	110	114800496	-	HNE_3269	-	hypothetical protein
3209	 60.18	0	3432635..3433081	-	148	114799461	-	HNE_3270	-	hypothetical protein
3210	 65.49	0	3433142..3434665	-	507	114798427	ubiB	HNE_3271	-	2-polyprenylphenol 6-hydroxylase
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.