IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3073	 61.17	0	3310556..3311338	+	260	114799743	-	HNE_3131	-	oxidoreductase, short chain dehydrogenase/reductase family protein
3074	 60.77	0	3311506..3312183	+	225	114798977	-	HNE_3132	-	nitroreductase family protein
3075	 62.33	0	3312282..3313457	+	391	114798652	-	HNE_3133	-	acetyl-CoA acyltransferase/thiolase family protein
3076	 57.69	-1	3313519..3313986	-	155	114797878	-	HNE_3134	-	MaoC domain-containing protein
3077	 59.58	0	3314133..3314894	-	253	114800198	-	HNE_3135	-	hypothetical protein
3078	 58.14	-1	3315057..3315947	-	296	114798691	-	HNE_3136	-	fatty acid desaturase
3079	 62.07	0	3316180..3317397	+	405	114797663	-	HNE_3137	-	hypothetical protein
3080	 61.43	0	3317406..3318455	-	349	114797088	-	HNE_3138	-	putative L-lysine 2,3-aminomutase
3081	 60.82	0	3318452..3319495	-	347	114799660	-	HNE_3139	-	tRNA synthetase, class II
3082	 55.67	-1	3319629..3320201	+	190	114797547	efp	HNE_3140	-	elongation factor P
3083	 57.87	-1	3320760..3321134	+	124	114800165	-	HNE_3141	-	hypothetical protein
3084	 57.83	-1	3321307..3322008	+	233	114799615	-	HNE_3142	-	DNA-binding response regulator
3085	 58.20	-1	3322005..3324686	-	893	114798578	-	HNE_3143	-	sensory box sensor histidine kinase/response regulator
3086	 59.60	0	3324716..3325267	-	183	114798084	-	HNE_3144	-	hypothetical protein
3087	 64.01	0	3325621..3326712	-	363	114797132	-	HNE_3146	-	trypsin domain-containing lipoprotein
3088	 63.76	0	3326709..3327707	-	332	114798274	-	HNE_3147	-	T4 family peptidase
3089	 65.71	0	3327785..3329566	+	593	114799053	ggt2	HNE_3148	-	gamma-glutamyltransferase
3090	 61.56	0	3329589..3330176	+	195	114800430	tdk	HNE_3149	-	thymidine kinase
3091	 59.21	0	3330212..3330868	+	218	114797681	-	HNE_3150	-	rhodanese-like domain-containing protein
3092	 60.81	0	3330995..3331780	+	261	114797718	-	HNE_3151	-	ferredoxin-NADP reductase family protein
3093	 57.64	-1	3331781..3332644	-	287	114798695	-	HNE_3152	-	cation channel family protein
3094	 63.56	0	3332734..3333732	-	332	114799753	-	HNE_3153	-	alpha/beta fold family hydrolase
3095	 62.96	0	3333874..3334521	-	215	114797215	-	HNE_3154	-	hypothetical protein
3096	 63.96	0	3334570..3336636	-	688	114799507	-	HNE_3155	-	DsbD family thioredoxin
3097	 60.25	0	3336875..3337669	-	264	114800476	-	HNE_3156	-	SapC family protein
3098	 67.89	+1	3337776..3339659	+	627	114798309	-	HNE_3157	-	hypothetical protein
3099	 65.71	0	3339687..3339998	+	103	114799776	-	HNE_3158	-	hypothetical protein
3100	 64.31	0	3339690..3340028	-	112	114797239	-	HNE_3159	-	hypothetical protein
3101	 62.20	0	3340207..3340542	-	111	114798848	-	HNE_3160	-	hypothetical protein
3102	 67.31	+1	3340811..3341428	-	205	114798756	-	HNE_3161	-	rpsU-divergently transcribed protein
3103	 62.38	0	3341564..3341773	+	69	114799687	rpsU	HNE_3162	-	ribosomal protein S21
3104	 61.42	0	3341939..3342643	+	234	114800275	-	HNE_3163	-	hypothetical protein
3105	 63.29	0	3342654..3344045	-	463	114799293	-	HNE_3164	-	hypothetical protein
3106	 66.67	+1	3344045..3345016	-	323	114798859	-	HNE_3165	-	ABC transporter, ATP-binding protein
3107	 54.84	-1	3345051..3345143	-	30	114798064	-	HNE_3166	-	hypothetical protein
3108	 59.74	0	3345156..3345458	-	100	114798717	-	HNE_3167	-	hypothetical protein
3109	 63.13	0	3345569..3346021	-	150	114798809	-	HNE_3168	-	hypothetical protein
3110	 59.00	0	3346034..3346294	-	86	114800009	grxC	HNE_3169	-	glutaredoxin 3
3111	 69.70	+2	3346363..3347121	-	252	114797458	-	HNE_3170	-	ComF family protein
3112	 66.23	+1	3347132..3348043	+	303	114800231	-	HNE_3171	-	hypothetical protein
3113	 59.44	0	3348051..3348230	-	59	114797894	-	HNE_3172	-	flp/Fap pilus protein
3114	 63.07	0	3348230..3348646	-	138	114797108	-	HNE_3173	-	putative mutator mutT protein
3115	 65.55	0	3348643..3349893	-	416	114798075	argJ	HNE_3174	-	arginine biosynthesis bifunctional protein ArgJ
3116	 63.05	0	3349890..3350801	-	303	114799826	-	HNE_3175	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
3117	 62.00	0	3350983..3353748	+	921	114797726	secA	HNE_3176	-	preprotein translocase, SecA subunit
3118	 69.57	+2	3353715..3354266	+	183	114799915	-	HNE_3177	-	hypothetical protein
3119	 69.22	+1	3354429..3355367	-	312	114797168	-	HNE_3178	-	hypothetical protein
3120	 60.04	0	3355564..3356574	+	336	114798520	gap	HNE_3179	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3121	 63.24	0	3356687..3357883	+	398	114799328	pgk	HNE_3180	-	phosphoglycerate kinase
3122	 61.19	0	3357986..3358879	+	297	114797979	fda	HNE_3181	-	fructose-1,6-bisphosphate aldolase
3123	 62.96	0	3358987..3359283	+	98	114798750	-	HNE_3182	-	hypothetical protein
3124	 65.37	0	3359295..3359525	+	76	114799812	-	HNE_3183	-	hypothetical protein
3125	 62.64	0	3359559..3359831	-	90	114797287	-	HNE_3184	-	hypothetical protein
3126	 66.97	+1	3359940..3360605	+	221	114797291	thiE	HNE_3185	-	thiamine-phosphate pyrophosphorylase
3127	 59.60	0	3360625..3360921	-	98	114798326	-	HNE_3186	-	hypothetical protein
3128	 64.84	0	3361091..3361912	+	273	114797941	suhB	HNE_3187	-	inositol-1-monophosphatase
3129	 60.67	0	3362042..3363541	+	499	114800504	-	HNE_3188	-	hypothetical protein
3130	 68.03	+1	3363833..3364417	+	194	114799920	-	HNE_3189	-	hypothetical protein
3131	 64.88	0	3364547..3365722	+	391	114798588	-	HNE_3190	-	ISHne2, transposase
3132	 58.20	-1	3365876..3366064	+	62	114797847	-	HNE_3191	-	hypothetical protein
3133	 66.50	+1	3366046..3367878	-	610	114798592	-	HNE_3192	-	efflux ABC transporter, permease/ATP-binding protein
3134	 59.36	0	3368052..3368270	+	72	114800232	rpmE	HNE_3193	-	ribosomal protein L31
3135	 61.83	0	3368344..3369150	-	268	114799372	-	HNE_3194	-	glycosyl transferase, group 2 family protein
3136	 63.47	0	3369147..3370430	-	427	114797140	-	HNE_3195	-	putative O-antigen polymerase
3137	 62.11	0	3370437..3372410	-	657	114799933	thrS	HNE_3196	-	threonyl-tRNA synthetase
3138	 67.91	+1	3372681..3373001	-	106	114798636	-	HNE_3197	-	hypothetical protein
3139	 64.41	0	3373001..3373444	-	147	114799469	-	HNE_3198	-	hypothetical protein
3140	 61.67	0	3373637..3374257	-	206	114800206	-	HNE_3199	-	ExoD family protein
3141	 61.65	0	3374254..3374811	-	185	114797483	-	HNE_3200	-	phosphoglycerate mutase family protein
3142	 62.05	0	3374796..3376181	-	461	114797963	cysS	HNE_3201	-	cysteinyl-tRNA synthetase
3143	 58.87	0	3376206..3376436	+	76	114799006	-	HNE_3202	-	hypothetical protein
3144	 58.62	0	3376545..3377165	+	206	114797723	folE	HNE_3203	-	GTP cyclohydrolase I
3145	 64.17	0	3377229..3377948	-	239	114798758	-	HNE_3204	-	hypothetical protein
3146	 58.83	0	3377959..3378864	-	301	114797757	-	HNE_3205	-	putative branched-chain amino acid aminotransferase
3147	 59.19	0	3378888..3379649	-	253	114798796	-	HNE_3206	-	hypothetical protein
3148	 62.40	0	3379671..3380186	-	171	114800548	-	HNE_3207	-	NUDIX family hydrolase
3149	 62.25	0	3380183..3381472	-	429	114799786	-	HNE_3208	-	hypothetical protein
3150	 61.63	0	3381599..3382948	-	449	114798612	-	HNE_3209	-	carboxyl-terminal protease
3151	 61.25	0	3382981..3384216	-	411	114797629	-	HNE_3210	-	M23 family peptidase
3152	 65.20	0	3384234..3384848	-	204	114799936	-	HNE_3211	-	hypothetical protein
3153	 64.74	0	3384975..3385286	+	103	114799190	-	HNE_3212	-	hypothetical protein
3154	 60.94	0	3385406..3385702	+	98	114797972	-	HNE_3213	-	hypothetical protein
3155	 60.79	0	3385812..3386441	-	209	114797231	-	HNE_3214	-	hypothetical protein
3156	 64.81	0	3386512..3387051	-	179	114799548	-	HNE_3215	-	acetyltransferase
3157	 59.43	0	3387065..3387520	-	151	114798394	-	HNE_3216	-	putative lipoprotein
3158	 63.70	0	3387610..3387912	-	100	114798959	-	HNE_3217	-	antibiotic biosynthesis monooxygenase domain-containing protein
3159	 62.20	0	3387921..3388883	-	320	114799989	mdh	HNE_3218	-	malate dehydrogenase
3160	 60.85	0	3389030..3389803	-	257	114797078	-	HNE_3219	-	hypothetical protein
3161	 57.06	-1	3390182..3390514	+	110	114798253	-	HNE_3220	-	hypothetical protein
3162	 64.88	0	3390587..3391147	+	186	114799686	-	HNE_3221	-	2'-5' RNA ligase
3163	 61.77	0	3391323..3391955	+	210	114800438	-	HNE_3223	-	ExoD family protein
3164	 65.13	0	3392005..3392523	+	172	114797603	-	HNE_3224	-	hypothetical protein
3165	 62.29	0	3392543..3393706	-	387	114798370	-	HNE_3225	-	acyl-CoA dehydrogenase family protein
3166	 59.67	0	3393819..3395690	-	623	114800038	-	HNE_3226	-	putative lipoprotein
3167	 66.15	+1	3395793..3396758	+	321	114797250	hemC	HNE_3227	-	porphobilinogen deaminase
3168	 69.47	+2	3396755..3397468	+	237	114800364	hemD	HNE_3228	-	uroporphyrinogen-III synthase
3169	 67.04	+1	3397538..3398611	+	357	114799645	-	HNE_3229	-	hypothetical protein
3170	 67.29	+1	3398617..3400053	+	478	114798425	-	HNE_3230	-	HemY domain-containing protein
3171	 65.82	+1	3400244..3400954	+	236	114797653	-	HNE_3232	-	short chain dehydrogenase/reductase family oxidoreductase
3172	 63.61	0	3400965..3401783	-	272	114797308	-	HNE_3233	-	PhzF family phenazine biosynthesis protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.