IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2927	 59.62	0	3142703..3143341	+	212	114797200	-	HNE_2984	-	thioesterase family protein
2928	 63.87	0	3143338..3143766	+	142	114799716	-	HNE_2985	-	thioesterase family protein
2929	 60.86	0	3143878..3144342	+	154	114800300	-	HNE_2986	-	putative lipoprotein
2930	 62.27	0	3144352..3145239	-	295	114798761	-	HNE_2987	-	putative lipoprotein
2931	 65.07	0	3145252..3148386	-	1044	114799148	-	HNE_2988	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
2932	 64.23	0	3148576..3149682	+	368	114797590	-	HNE_2989	-	glycosyl transferase, group 1 family protein
2933	 62.84	0	3149685..3150782	-	365	114799207	-	HNE_2990	-	putative phosphate ABC transporter, periplasmic phosphate-binding protein
2934	 62.82	0	3151052..3152248	+	398	114800350	-	HNE_2991	-	decarboxylase, group IV
2935	 66.09	+1	3152191..3153063	-	290	114799484	murI	HNE_2992	-	glutamate racemase
2936	 62.96	0	3153174..3153497	+	107	114798774	-	HNE_2993	-	hypothetical protein
2937	 62.50	0	3153502..3153933	-	143	114798864	-	HNE_2994	-	hypothetical protein
2938	 63.14	0	3154082..3156466	+	794	114799863	-	HNE_2995	-	pyruvate dehydrogenase E1 component-like protein
2939	 58.64	0	3156519..3158411	+	630	114797530	-	HNE_2996	-	diguanylate cyclase
2940	 61.21	0	3158427..3159269	-	280	114799306	-	HNE_2997	-	carbon-nitrogen family hydrolase
2941	 65.35	0	3159286..3160269	-	327	114798798	-	HNE_2998	-	peptidyl-arginine deiminase family protein
2942	 58.63	0	3160362..3163508	-	1048	114797805	-	HNE_2999	-	outer membrane receptor (OMR) family protein
2943	 63.05	0	3163770..3165347	+	525	114797402	-	HNE_3000	-	hypothetical protein
2944	 60.34	0	3165359..3166006	-	215	114798944	msrA1	HNE_3001	-	methionine-S-sulfoxide reductase
2945	 67.10	+1	3166169..3168223	-	684	114797739	pbpC	HNE_3002	-	penicillin-binding protein 1C
2946	 64.65	0	3168265..3173262	-	1665	114800482	-	HNE_3003	-	alpha-2-macroglobulin family protein
2947	 65.28	0	3173349..3174212	-	287	114799475	-	HNE_3004	-	hypothetical protein
2948	 65.04	0	3174276..3174950	+	224	114799457	-	HNE_3005	-	TPR domain-containing protein
2949	 55.16	-1	3174969..3175394	-	141	114799126	-	HNE_3006	-	putative lipoprotein
2950	 66.67	+1	3175555..3176925	-	456	114800113	-	HNE_3007	-	cytosol aminopeptidase
2951	 66.67	+1	3177046..3177912	+	288	114797147	-	HNE_3008	-	TPR domain-containing protein
2952	 61.08	0	3177982..3179001	-	339	114798130	-	HNE_3009	-	type II secretion system protein
2953	 60.10	0	3179016..3180035	-	339	114798049	-	HNE_3010	-	secretion system protein
2954	 60.55	0	3180047..3181534	-	495	114800387	cpaF	HNE_3011	-	pilus assembly protein CpaF
2955	 59.20	0	3181560..3182966	-	468	114797644	-	HNE_3012	-	pilus assembly protein CpaE
2956	 61.18	0	3183001..3183711	-	236	114798148	-	HNE_3013	-	pilus assembly protein CpaD
2957	 60.63	0	3183724..3185331	-	535	114799376	-	HNE_3014	-	pilus assembly protein CpaC
2958	 61.94	0	3185334..3186179	-	281	114799072	-	HNE_3015	-	pilus assembly protein CpaB
2959	 62.02	0	3186278..3186793	-	171	114800034	-	HNE_3016	-	pilus assembly protein CpaA
2960	 56.32	-1	3186944..3187117	-	57	114797760	-	HNE_3017	-	flp/Fap pilus protein
2961	 57.43	-1	3187425..3187868	+	147	114798749	-	HNE_3018	-	hypothetical protein
2962	 56.97	-1	3187981..3188547	+	188	114797939	-	HNE_3019	-	TadE-like protein
2963	 56.80	-1	3188544..3189161	+	205	114798948	-	HNE_3020	-	Flp/Fap pilin component
2964	 63.04	0	3189158..3190645	-	495	114799959	-	HNE_3021	-	hypothetical protein
2965	 61.68	0	3190739..3192163	-	474	114797447	murC	HNE_3022	-	UDP-N-acetylmuramate--L-alanine ligase
2966	 60.78	0	3192179..3192535	-	118	114798779	-	HNE_3023	-	hypothetical protein
2967	 64.31	0	3192532..3193632	-	366	114799346	murG	HNE_3024	-	N-acetylglucosaminyl transferase
2968	 61.98	0	3193625..3194776	-	383	114799677	-	HNE_3025	-	cell cycle protein FtsW
2969	 62.99	0	3194773..3196188	-	471	114798168	murD	HNE_3026	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2970	 62.73	0	3196199..3197392	-	397	114797628	mraY	HNE_3027	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2971	 63.12	0	3197392..3198828	-	478	114799693	murF	HNE_3028	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
2972	 64.65	0	3198825..3200261	-	478	114798974	murE	HNE_3029	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
2973	 65.63	0	3200258..3201901	-	547	114798338	-	HNE_3030	-	putative penicillin-binding protein 2
2974	 62.09	0	3201898..3202290	-	130	114797112	-	HNE_3031	-	putative cell division protein FtsL
2975	 65.31	0	3202287..3203315	-	342	114799717	mraW	HNE_3032	-	S-adenosyl-methyltransferase MraW
2976	 62.45	0	3203315..3203812	-	165	114800447	-	HNE_3033	-	putative MraZ protein
2977	 63.72	0	3204224..3204766	-	180	114799646	-	HNE_3034	-	alkylhydroperoxidase
2978	 59.32	0	3204895..3205452	-	185	114797286	ahpC	HNE_3035	-	alkylhydroperoxide reductase C
2979	 67.85	+1	3205566..3206495	+	309	114800072	-	HNE_3036	-	putative oxidative stress regulatory protein OxyR
2980	 65.58	0	3206624..3207817	+	397	114800086	-	HNE_3037	-	hypothetical protein
2981	 63.01	0	3207909..3208892	+	327	114798495	-	HNE_3038	-	transcriptional regulator, MarR family/acetyltransferase, GNAT family protein
2982	 64.02	0	3208917..3210392	-	491	114797505	-	HNE_3039	-	sigma-54 dependent DNA-binding response regulator
2983	 67.20	+1	3210675..3212183	+	502	114799704	-	HNE_3040	-	phosphate transporter family protein
2984	 68.52	+1	3212391..3212768	+	125	114798958	-	HNE_3041	-	hypothetical protein
2985	 50.30	-2	3213821..3213985	-	54	114797702	-	HNE_3042	-	hypothetical protein
2986	 54.01	-2	3214073..3214309	-	78	114800542	-	HNE_3043	-	hypothetical protein
2987	 63.25	0	3214753..3215103	-	116	114799356	-	HNE_3044	-	hypothetical protein
2988	 63.49	0	3215337..3217382	+	681	114800055	uvrB	HNE_3045	-	excinuclease ABC subunit B
2989	 68.65	+1	3217688..3218443	-	251	114797872	-	HNE_3047	-	hypothetical protein
2990	 66.01	+1	3218636..3218938	+	100	114798648	-	HNE_3048	-	hypothetical protein
2991	 58.52	0	3219040..3219960	+	306	114799849	-	HNE_3049	-	hypothetical protein
2992	 60.93	0	3220484..3222820	+	778	114797059	-	HNE_3050	-	TonB-dependent receptor
2993	 60.03	0	3222945..3223652	-	235	114798285	-	HNE_3051	-	TetR family transcriptional regulator
2994	 61.99	0	3223829..3224704	+	291	114799036	-	HNE_3052	-	alpha/beta fold family hydrolase
2995	 62.86	0	3224701..3225987	+	428	114800311	-	HNE_3053	-	major facilitator family transporter
2996	 61.93	0	3225965..3226513	+	182	114797891	-	HNE_3054	-	thioesterase family protein
2997	 62.84	0	3226540..3227166	-	208	114798608	-	HNE_3055	-	putative lipoprotein
2998	 57.49	-1	3227298..3228245	-	315	114798552	-	HNE_3056	-	ABC transporter, permease protein
2999	 64.31	0	3228374..3228925	+	183	114799479	gcrA	HNE_3057	-	GcrA cell cycle regulator
3000	 63.48	0	3229002..3230381	-	459	114800483	-	HNE_3058	-	sensor histidine kinase
3001	 65.58	0	3230592..3232061	+	489	114797724	-	HNE_3059	-	RND efflux system outer membrane lipoprotein
3002	 65.25	0	3232067..3233335	+	422	114797172	-	HNE_3060	-	RND family efflux transporter MFP subunit
3003	 60.89	0	3233332..3236553	+	1073	114797926	-	HNE_3061	-	AcrB/AcrD/AcrF family protein
3004	 59.20	0	3236639..3238861	+	740	114799171	-	HNE_3062	-	M13 family peptidase
3005	 62.12	0	3238996..3239325	+	109	114800006	-	HNE_3063	-	hypothetical protein
3006	 64.85	0	3239431..3240036	+	201	114797596	-	HNE_3064	-	glutathione peroxidase family protein
3007	 64.47	0	3240139..3241320	+	393	114798386	-	HNE_3065	-	acetyl-CoA acetyltransferase/thiolase family protein
3008	 65.22	0	3241329..3241952	+	207	114798997	-	HNE_3066	-	hypothetical protein
3009	 62.60	0	3241971..3243053	+	360	114797449	-	HNE_3067	-	hypothetical protein
3010	 64.92	0	3243090..3244175	-	361	114798211	-	HNE_3068	-	beta-lactamase
3011	 52.21	-2	3244228..3244884	-	218	114799504	-	HNE_3069	-	AsnC family transcriptional regulator
3012	 62.48	0	3244853..3248314	+	1153	114800274	-	HNE_3070	-	indolepyruvate ferredoxin oxidoreductase
3013	 62.46	0	3248406..3248738	-	110	114797671	-	HNE_3071	-	hypothetical protein
3014	 61.83	0	3248802..3250394	-	530	114798391	lysK	HNE_3072	-	lysyl-tRNA synthetase
3015	 56.00	-1	3250554..3251003	+	149	114799146	-	HNE_3073	-	hypothetical protein
3016	 59.65	0	3251007..3251234	+	75	114800333	-	HNE_3074	-	DNA-binding protein
3017	 56.62	-1	3251298..3251516	+	72	114799695	-	HNE_3075	-	BFD/(2Fe-2S)-binding domain-containing protein
3018	 53.50	-2	3251720..3252205	+	161	114797328	bfr	HNE_3076	-	bacterioferritin
3019	 60.02	0	3252303..3253205	+	300	114800427	-	HNE_3077	-	hypothetical protein
3020	 56.27	-1	3253377..3253751	+	124	114798832	-	HNE_3078	-	hypothetical protein
3021	 60.42	0	3253828..3254964	-	378	114798498	-	HNE_3079	-	acyl-CoA dehydrogenase family protein
3022	 60.91	0	3255025..3256239	-	404	114797732	-	HNE_3080	-	acyl-CoA dehydrogenase family protein
3023	 61.26	0	3256392..3256835	-	147	114799896	-	HNE_3081	-	hypothetical protein
3024	 61.20	0	3256990..3258600	+	536	114798846	-	HNE_3082	-	deoxyribodipyrimidine photolyase family protein
3025	 60.46	0	3259246..3259551	+	101	114797586	-	HNE_3083	-	hypothetical protein
3026	 58.71	0	3259667..3260194	-	175	114797448	-	HNE_3084	-	phosphoglycerate mutase family protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.