IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2878	 65.24	0	3091950..3093905	-	651	114797905	mrdA	HNE_2934	-	penicillin-binding protein 2
2879	 62.86	0	3093902..3094453	-	183	114798654	-	HNE_2935	-	hypothetical protein
2880	 66.96	+1	3094456..3095490	-	344	114799374	-	HNE_2936	-	putative rod shape-determining protein MreC
2881	 60.81	0	3095529..3096569	-	346	114800181	mreB	HNE_2937	-	rod shape-determining protein MreB
2882	 63.64	0	3097054..3099399	-	781	114798822	-	HNE_2938	-	putative DNA helicase II
2883	 61.49	0	3099565..3101265	+	566	114798357	-	HNE_2939	-	AsmA family protein
2884	 65.43	0	3101340..3102068	+	242	114798129	-	HNE_2940	-	hypothetical protein
2885	 60.99	0	3102077..3102622	-	181	114797131	-	HNE_2941	-	putative lipoprotein
2886	 62.51	0	3102708..3103814	-	368	114799651	-	HNE_2942	-	oxidoreductase, FAD/FMN-binding
2887	 63.09	0	3103965..3104942	+	325	114798671	-	HNE_2943	-	hypothetical protein
2888	 60.32	0	3104971..3105096	-	41	114800016	-	HNE_2944	-	hypothetical protein
2889	 52.60	-2	3105163..3105354	-	63	114799471	-	HNE_2945	-	hypothetical protein
2890	 63.20	0	3105351..3105956	-	201	114798059	-	HNE_2946	-	hypothetical protein
2891	 61.95	0	3105962..3106300	-	112	114797460	-	HNE_2947	-	hypothetical protein
2892	 70.92	+2	3106344..3106625	-	93	114799888	-	HNE_2948	-	hypothetical protein
2893	 68.52	+1	3106693..3107016	-	107	114797295	-	HNE_2949	-	hypothetical protein
2894	 62.31	0	3107044..3108444	-	466	114799865	fumC	HNE_2950	-	fumarate hydratase
2895	 59.28	0	3109107..3109580	-	157	114797360	-	HNE_2951	-	hypothetical protein
2896	 63.31	0	3109793..3110149	+	118	114798324	-	HNE_2952	-	RusA family protein
2897	 62.75	0	3110156..3111382	-	408	114799316	-	HNE_2953	-	cytochrome P450 family protein
2898	 60.49	0	3111473..3111925	-	150	114800340	-	HNE_2954	-	thioesterase family protein
2899	 61.36	0	3111955..3112425	-	156	114797792	-	HNE_2955	-	hypothetical protein
2900	 63.52	0	3112624..3113862	+	412	114798800	-	HNE_2956	-	pyridoxal-dependent decarboxylase domain-containing protein
2901	 58.99	0	3113956..3114372	+	138	114799809	-	HNE_2957	-	hypothetical protein
2902	 62.57	0	3114397..3115737	-	446	114797208	-	HNE_2958	-	type I phosphodiesterase/nucleotide pyrophosphatase family protein
2903	 60.73	0	3115887..3117857	+	656	114797957	-	HNE_2959	-	S9A/B/C family peptidase
2904	 59.82	0	3117985..3118656	+	223	114799209	-	HNE_2960	-	glutathione S-transferase
2905	 65.97	+1	3118681..3119688	-	335	114799928	-	HNE_2961	-	short chain dehydrogenase/reductase family oxidoreductase
2906	 63.98	0	3119799..3120281	-	160	114797630	-	HNE_2962	-	hypothetical protein
2907	 59.69	0	3120271..3120915	-	214	114798412	-	HNE_2963	-	hypothetical protein
2908	 60.62	0	3121490..3122101	+	203	114797624	-	HNE_2965	-	TetR family transcriptional regulator
2909	 63.25	0	3122104..3123948	-	614	114798753	uvrC	HNE_2966	-	excinuclease ABC subunit C
2910	 61.37	0	3124031..3124540	-	169	114797434	-	HNE_2967	-	hypothetical protein
2911	 63.78	0	3124579..3125790	+	403	114797936	aatA	HNE_2968	-	aspartate aminotransferase
2912	 61.72	0	3125912..3126376	+	154	114797861	dps	HNE_2969	-	DNA protection protein
2913	 65.94	+1	3126373..3127338	-	321	114800239	-	HNE_2970	-	alpha/beta fold family hydrolase
2914	 63.41	0	3127526..3128353	+	275	114798137	-	HNE_2971	-	hypothetical protein
2915	 61.59	0	3128407..3130335	+	642	114797417	-	HNE_2972	-	hypothetical protein
2916	 63.49	0	3130606..3131517	-	303	114799877	-	HNE_2973	-	LysR family transcriptional regulator
2917	 63.35	0	3131673..3132455	+	260	114800460	-	HNE_2974	-	oxidoreductase, short chain dehydrogenase/reductase family protein
2918	 64.00	0	3133304..3134278	-	324	114799638	-	HNE_2975	-	zinc-binding dehydrogenase family oxidoreductase
2919	 64.46	0	3134275..3135315	-	346	114798413	-	HNE_2976	-	alpha/beta hydrolase fold family protein
2920	 62.74	0	3135402..3136088	-	228	114797609	-	HNE_2977	-	TetR family transcriptional regulator
2921	 66.67	+1	3136215..3136847	-	210	114798893	-	HNE_2978	-	hypothetical protein
2922	 46.11	-2	3136988..3139171	+	727	114798367	-	HNE_2979	-	KAP P-loop domain-containing protein
2923	 63.72	0	3139245..3139922	-	225	114797595	-	HNE_2980	-	hypothetical protein
2924	 64.55	0	3139934..3140641	-	235	114797224	-	HNE_2981	-	hypothetical protein
2925	 67.37	+1	3140684..3141394	-	236	114798883	-	HNE_2982	-	M23 family peptidase
2926	 61.19	0	3141405..3142736	-	443	114798584	-	HNE_2983	-	monooxygenase flavin-binding family protein
2927	 59.62	0	3142703..3143341	+	212	114797200	-	HNE_2984	-	thioesterase family protein
2928	 63.87	0	3143338..3143766	+	142	114799716	-	HNE_2985	-	thioesterase family protein
2929	 60.86	0	3143878..3144342	+	154	114800300	-	HNE_2986	-	putative lipoprotein
2930	 62.27	0	3144352..3145239	-	295	114798761	-	HNE_2987	-	putative lipoprotein
2931	 65.07	0	3145252..3148386	-	1044	114799148	-	HNE_2988	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
2932	 64.23	0	3148576..3149682	+	368	114797590	-	HNE_2989	-	glycosyl transferase, group 1 family protein
2933	 62.84	0	3149685..3150782	-	365	114799207	-	HNE_2990	-	putative phosphate ABC transporter, periplasmic phosphate-binding protein
2934	 62.82	0	3151052..3152248	+	398	114800350	-	HNE_2991	-	decarboxylase, group IV
2935	 66.09	+1	3152191..3153063	-	290	114799484	murI	HNE_2992	-	glutamate racemase
2936	 62.96	0	3153174..3153497	+	107	114798774	-	HNE_2993	-	hypothetical protein
2937	 62.50	0	3153502..3153933	-	143	114798864	-	HNE_2994	-	hypothetical protein
2938	 63.14	0	3154082..3156466	+	794	114799863	-	HNE_2995	-	pyruvate dehydrogenase E1 component-like protein
2939	 58.64	0	3156519..3158411	+	630	114797530	-	HNE_2996	-	diguanylate cyclase
2940	 61.21	0	3158427..3159269	-	280	114799306	-	HNE_2997	-	carbon-nitrogen family hydrolase
2941	 65.35	0	3159286..3160269	-	327	114798798	-	HNE_2998	-	peptidyl-arginine deiminase family protein
2942	 58.63	0	3160362..3163508	-	1048	114797805	-	HNE_2999	-	outer membrane receptor (OMR) family protein
2943	 63.05	0	3163770..3165347	+	525	114797402	-	HNE_3000	-	hypothetical protein
2944	 60.34	0	3165359..3166006	-	215	114798944	msrA1	HNE_3001	-	methionine-S-sulfoxide reductase
2945	 67.10	+1	3166169..3168223	-	684	114797739	pbpC	HNE_3002	-	penicillin-binding protein 1C
2946	 64.65	0	3168265..3173262	-	1665	114800482	-	HNE_3003	-	alpha-2-macroglobulin family protein
2947	 65.28	0	3173349..3174212	-	287	114799475	-	HNE_3004	-	hypothetical protein
2948	 65.04	0	3174276..3174950	+	224	114799457	-	HNE_3005	-	TPR domain-containing protein
2949	 55.16	-1	3174969..3175394	-	141	114799126	-	HNE_3006	-	putative lipoprotein
2950	 66.67	+1	3175555..3176925	-	456	114800113	-	HNE_3007	-	cytosol aminopeptidase
2951	 66.67	+1	3177046..3177912	+	288	114797147	-	HNE_3008	-	TPR domain-containing protein
2952	 61.08	0	3177982..3179001	-	339	114798130	-	HNE_3009	-	type II secretion system protein
2953	 60.10	0	3179016..3180035	-	339	114798049	-	HNE_3010	-	secretion system protein
2954	 60.55	0	3180047..3181534	-	495	114800387	cpaF	HNE_3011	-	pilus assembly protein CpaF
2955	 59.20	0	3181560..3182966	-	468	114797644	-	HNE_3012	-	pilus assembly protein CpaE
2956	 61.18	0	3183001..3183711	-	236	114798148	-	HNE_3013	-	pilus assembly protein CpaD
2957	 60.63	0	3183724..3185331	-	535	114799376	-	HNE_3014	-	pilus assembly protein CpaC
2958	 61.94	0	3185334..3186179	-	281	114799072	-	HNE_3015	-	pilus assembly protein CpaB
2959	 62.02	0	3186278..3186793	-	171	114800034	-	HNE_3016	-	pilus assembly protein CpaA
2960	 56.32	-1	3186944..3187117	-	57	114797760	-	HNE_3017	-	flp/Fap pilus protein
2961	 57.43	-1	3187425..3187868	+	147	114798749	-	HNE_3018	-	hypothetical protein
2962	 56.97	-1	3187981..3188547	+	188	114797939	-	HNE_3019	-	TadE-like protein
2963	 56.80	-1	3188544..3189161	+	205	114798948	-	HNE_3020	-	Flp/Fap pilin component
2964	 63.04	0	3189158..3190645	-	495	114799959	-	HNE_3021	-	hypothetical protein
2965	 61.68	0	3190739..3192163	-	474	114797447	murC	HNE_3022	-	UDP-N-acetylmuramate--L-alanine ligase
2966	 60.78	0	3192179..3192535	-	118	114798779	-	HNE_3023	-	hypothetical protein
2967	 64.31	0	3192532..3193632	-	366	114799346	murG	HNE_3024	-	N-acetylglucosaminyl transferase
2968	 61.98	0	3193625..3194776	-	383	114799677	-	HNE_3025	-	cell cycle protein FtsW
2969	 62.99	0	3194773..3196188	-	471	114798168	murD	HNE_3026	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2970	 62.73	0	3196199..3197392	-	397	114797628	mraY	HNE_3027	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2971	 63.12	0	3197392..3198828	-	478	114799693	murF	HNE_3028	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
2972	 64.65	0	3198825..3200261	-	478	114798974	murE	HNE_3029	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
2973	 65.63	0	3200258..3201901	-	547	114798338	-	HNE_3030	-	putative penicillin-binding protein 2
2974	 62.09	0	3201898..3202290	-	130	114797112	-	HNE_3031	-	putative cell division protein FtsL
2975	 65.31	0	3202287..3203315	-	342	114799717	mraW	HNE_3032	-	S-adenosyl-methyltransferase MraW
2976	 62.45	0	3203315..3203812	-	165	114800447	-	HNE_3033	-	putative MraZ protein
2977	 63.72	0	3204224..3204766	-	180	114799646	-	HNE_3034	-	alkylhydroperoxidase
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.