IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2743	 50.51	-2	2960739..2961332	-	197	114799234	-	HNE_2798	-	phosphoprotein phosphatase
2744	 63.79	0	2961333..2961818	-	161	114797634	smpB	HNE_2799	-	SsrA-binding protein
2745	 65.08	0	2961828..2962709	-	293	114798403	dapA	HNE_2800	-	dihydrodipicolinate synthase
2746	 68.40	+1	2962811..2965003	+	730	114800029	-	HNE_2801	-	Slt family transglycosylase
2747	 58.33	-1	2965327..2965722	+	131	114797083	-	HNE_2802	-	hypothetical protein
2748	 59.99	0	2965861..2967297	-	478	114797304	calB	HNE_2803	-	coniferyl aldehyde dehydrogenase
2749	 64.92	0	2967465..2968265	+	266	114798301	-	HNE_2804	-	enoyl-CoA hydratase
2750	 61.55	0	2968364..2968852	+	162	114800167	-	HNE_2805	-	hypothetical protein
2751	 60.05	0	2968855..2969232	-	125	114797631	-	HNE_2806	-	TfoX domain-containing protein
2752	 59.86	0	2969231..2969524	+	97	114797266	-	HNE_2808	-	hypothetical protein
2753	 64.39	0	2969249..2969380	-	43	114798438	-	HNE_2807	-	hypothetical protein
2754	 61.57	0	2969503..2970699	-	398	114799425	-	HNE_2809	-	beta-lactamase
2755	 62.45	0	2970738..2971898	-	386	114797804	-	HNE_2810	-	acyl-CoA dehydrogenase
2756	 60.65	0	2972010..2972441	+	143	114799197	-	HNE_2811	-	thioesterase family protein
2757	 60.61	0	2972438..2973229	+	263	114799740	-	HNE_2812	-	short chain dehydrogenase/reductase family oxidoreductase
2758	 66.63	+1	2973328..2975991	-	887	114797546	-	HNE_2813	-	M1 family peptidase
2759	 61.30	0	2978025..2978639	-	204	114798409	-	HNE_2815	-	glutathione S-transferase
2760	 65.79	+1	2978650..2980584	-	644	114799151	-	HNE_2816	-	putative TonB-dependent receptor
2761	 64.57	0	2980743..2982032	-	429	114800517	-	HNE_2817	-	NupC family nucleoside transporter
2762	 62.47	0	2982243..2983790	+	515	114797922	-	HNE_2818	-	serine carboxypeptidase family protein
2763	 64.75	0	2984329..2984694	-	121	114798926	-	HNE_2819	-	glyoxalase family protein
2764	 63.52	0	2984839..2985759	+	306	114800383	-	HNE_2820	-	short chain dehydrogenase/reductase family oxidoreductase
2765	 65.33	0	2985826..2986200	+	124	114797599	-	HNE_2821	-	Kazal domain-containing protein
2766	 67.98	+1	2986216..2986443	-	75	114798377	-	HNE_2822	-	hypothetical protein
2767	 57.79	-1	2986459..2987055	-	198	114799134	-	HNE_2823	-	hypothetical protein
2768	 70.14	+2	2987157..2988221	-	354	114800085	-	HNE_2824	-	hypothetical protein
2769	 62.37	0	2988553..2989926	-	457	114799107	-	HNE_2825	-	Ser/Thr protein phosphatase family protein
2770	 61.94	0	2990103..2990525	-	140	114797079	rplQ	HNE_2826	-	ribosomal protein L17
2771	 60.16	0	2990570..2991598	-	342	114798821	rpoA	HNE_2827	-	DNA-directed RNA polymerase subunit alpha
2772	 62.05	0	2991654..2992043	-	129	114799611	rpsK	HNE_2828	-	30S ribosomal protein S11
2773	 57.99	-1	2992057..2992425	-	122	114800366	rpsM	HNE_2829	-	30S ribosomal protein S13
2774	 62.11	0	2992574..2993143	-	189	114797627	adk	HNE_2830	-	adenylate kinase
2775	 58.92	0	2993140..2994495	-	451	114797687	secY	HNE_2831	-	preprotein translocase, SecY subunit
2776	 63.96	0	2994585..2995064	-	159	114797152	rplO	HNE_2832	-	ribosomal protein L15
2777	 61.29	0	2995117..2995302	-	61	114798424	rpmD	HNE_2833	-	ribosomal protein L30
2778	 64.01	0	2995315..2995917	-	200	114799166	rpsE	HNE_2834	-	30S ribosomal protein S5
2779	 63.09	0	2995931..2996293	-	120	114798156	rplR	HNE_2835	-	ribosomal protein L18
2780	 60.95	0	2996298..2996909	-	203	114797429	rplF	HNE_2836	-	ribosomal protein L6
2781	 57.32	-1	2996922..2997317	-	131	114799650	rpsH	HNE_2837	-	ribosomal protein S8
2782	 60.78	0	2997334..2997639	-	101	114798922	rpsN	HNE_2838	-	ribosomal protein S14
2783	 57.30	-1	2997659..2998213	-	184	114797583	rplE	HNE_2839	-	50S ribosomal protein L5
2784	 58.18	-1	2998206..2998523	-	105	114799152	rplX	HNE_2840	-	ribosomal protein L24
2785	 61.25	0	2998526..2998894	-	122	114799563	rplN	HNE_2841	-	ribosomal protein L14
2786	 54.07	-2	2998891..2999136	-	81	114798486	rpsQ	HNE_2842	-	ribosomal protein S17
2787	 55.56	-1	2999148..2999345	-	65	114799564	rpmC	HNE_2843	-	ribosomal protein L29
2788	 60.91	0	2999348..2999764	-	138	114798200	rplP	HNE_2844	-	50S ribosomal protein L16
2789	 61.38	0	2999768..3000505	-	245	114797822	rpsC	HNE_2845	-	ribosomal protein S3
2790	 61.54	0	3000505..3000894	-	129	114799750	rplV	HNE_2846	-	50S ribosomal protein L22
2791	 56.27	-1	3000897..3001175	-	92	114799147	rpsS	HNE_2847	-	ribosomal protein S19
2792	 61.49	0	3001194..3002024	-	276	114798100	rplB	HNE_2848	-	50S ribosomal protein L2
2793	 53.67	-2	3002043..3002342	-	99	114799096	rplW	HNE_2849	-	ribosomal protein L23
2794	 60.47	0	3002342..3002986	-	214	114799746	rplD	HNE_2850	-	50S ribosomal protein L4
2795	 61.26	0	3002986..3003744	-	252	114797091	rplC	HNE_2851	-	ribosomal protein L3
2796	 59.50	0	3003744..3004064	-	106	114798629	rpsJ	HNE_2852	-	ribosomal protein S10
2797	 62.05	0	3004398..3005588	-	396	114799428	tuf2	HNE_2853	-	elongation factor Tu
2798	 60.08	0	3005625..3007748	-	707	114800238	fusA	HNE_2854	-	elongation factor G
2799	 60.30	0	3007836..3008306	-	156	114799363	rpsG	HNE_2855	-	30S ribosomal protein S7
2800	 61.56	0	3008322..3008693	-	123	114800161	rpsL	HNE_2856	-	30S ribosomal protein S12
2801	 61.75	0	3009131..3013339	-	1402	114798314	rpoC	HNE_2857	-	DNA-directed RNA polymerase, beta' subunit
2802	 61.11	0	3013454..3017590	-	1378	114799111	rpoB	HNE_2858	-	DNA-directed RNA polymerase subunit beta
2803	 56.61	-1	3017745..3018122	-	125	114798365	rplL	HNE_2859	-	ribosomal protein L7/L12
2804	 59.88	0	3018181..3018696	-	171	114799263	rplJ	HNE_2860	-	ribosomal protein L10
2805	 56.75	-1	3019117..3019953	+	278	114800263	-	HNE_2861	-	hypothetical protein
2806	 61.66	0	3019963..3020880	-	305	114797871	-	HNE_2862	-	hypothetical protein
2807	 59.98	0	3020155..3021051	+	298	114797065	-	HNE_2863	-	hypothetical protein
2808	 60.78	0	3021063..3021758	-	231	114798066	rplA	HNE_2864	-	50S ribosomal protein L1
2809	 59.51	0	3021764..3022210	-	148	114799038	rplK	HNE_2865	-	ribosomal protein L11
2810	 63.72	0	3022411..3023190	-	259	114800106	-	HNE_2866	-	M48 family peptidase
2811	 65.07	0	3023529..3023903	+	124	114799225	-	HNE_2867	-	hypothetical protein
2812	 68.03	+1	3024129..3024716	+	195	114798598	-	HNE_2868	-	hypothetical protein
2813	 66.24	+1	3024688..3026091	-	467	114800065	-	HNE_2869	-	hypothetical protein
2814	 63.11	0	3026220..3027035	+	271	114799377	-	HNE_2870	-	RNA methyltransferase
2815	 66.44	+1	3027032..3027928	+	298	114800149	-	HNE_2871	-	hypothetical protein
2816	 65.69	0	3027965..3028474	-	169	114797875	-	HNE_2872	-	putative lipoprotein
2817	 59.74	0	3028704..3031820	-	1038	114798601	-	HNE_2873	-	TonB-dependent receptor
2818	 62.30	0	3032384..3034009	-	541	114799455	oppA	HNE_2874	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
2819	 64.07	0	3034121..3034621	+	166	114800192	-	HNE_2875	-	hypothetical protein
2820	 62.33	0	3034637..3035536	-	299	114798441	-	HNE_2876	-	metallo-beta-lactamase family protein
2821	 59.42	0	3035570..3036508	-	312	114799472	-	HNE_2877	-	hypothetical protein
2822	 65.45	0	3036624..3037034	-	136	114799348	-	HNE_2878	-	hypothetical protein
2823	 63.89	0	3037168..3038139	+	323	114797841	oppB	HNE_2879	-	oligopeptide ABC transporter, permease protein
2824	 65.46	0	3038139..3039050	+	303	114797484	oppC	HNE_2880	-	oligopeptide ABC transporter, permease protein
2825	 67.84	+1	3039149..3039913	+	254	114798212	-	HNE_2881	-	alpha/beta fold family hydrolase
2826	 64.24	0	3039916..3040491	-	191	114798851	-	HNE_2882	-	glyoxalase family protein
2827	 64.01	0	3040899..3041687	-	262	114799905	-	HNE_2883	-	transglutaminase family protein
2828	 63.95	0	3041912..3042757	+	281	114798622	-	HNE_2884	-	putative neutral zinc metallopeptidase
2829	 63.80	0	3042809..3044098	+	429	114799633	-	HNE_2885	-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein
2830	 61.07	0	3044119..3044868	-	249	114799239	-	HNE_2886	-	hypothetical protein
2831	 58.02	-1	3044948..3045583	-	211	114798423	-	HNE_2887	-	hypothetical protein
2832	 60.47	0	3045686..3047686	-	666	114797662	rpoD	HNE_2888	-	RNA polymerase sigma factor RpoD
2833	 64.76	0	3047761..3049644	-	627	114799204	dnaG	HNE_2889	-	DNA primase
2834	 59.03	0	3049783..3050568	-	261	114799941	-	HNE_2890	-	hypothetical protein
2835	 65.17	0	3050657..3051124	-	155	114797362	-	HNE_2891	-	hypothetical protein
2836	 63.39	0	3051313..3052473	+	386	114797494	carA	HNE_2892	-	carbamoyl-phosphate synthase, small subunit
2837	 62.04	0	3052527..3053153	-	208	114798879	dxnH	HNE_2893	-	3-oxoadipate CoA-succinyl transferase, beta subunit
2838	 61.86	0	3053153..3053860	-	235	114799898	dxnG	HNE_2894	-	3-oxoadipate CoA-succinyl transferase, alpha subunit
2839	 58.48	0	3053879..3054391	-	170	114799761	-	HNE_2895	-	hypothetical protein
2840	 63.71	0	3054544..3055557	-	337	114797317	-	HNE_2896	-	fumarylacetoacetate hydrolase family protein
2841	 54.60	-2	3055580..3056209	-	209	114798664	-	HNE_2897	-	hypothetical protein
2842	 58.01	-1	3055949..3056179	+	76	114800074	-	HNE_2898	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.