IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2688	 60.71	0	2905185..2905436	+	83	114797746	-	HNE_2743	-	hypothetical protein
2689	 67.64	+1	2905433..2906254	+	273	114798722	-	HNE_2744	-	hypothetical protein
2690	 62.83	0	2906263..2908296	-	677	114799304	-	HNE_2745	-	hypothetical protein
2691	 66.46	+1	2908410..2909387	-	325	114798399	-	HNE_2746	-	putative quinone oxidoreductase
2692	 62.33	0	2909515..2909883	+	122	114799657	-	HNE_2747	-	glyoxalase family protein
2693	 62.45	0	2909911..2910171	-	86	114799956	-	HNE_2748	-	hypothetical protein
2694	 64.39	0	2910171..2910959	-	262	114797602	-	HNE_2749	-	enoyl-CoA hydratase/isomerase family protein
2695	 61.39	0	2910960..2911736	-	258	114797526	-	HNE_2750	-	TerC family membrane protein
2696	 63.31	0	2911879..2912862	+	327	114800471	-	HNE_2751	-	putative epoxide hydrolase
2697	 59.34	0	2912977..2913699	+	240	114800515	-	HNE_2752	-	hypothetical protein
2698	 64.64	0	2913791..2914432	-	213	114798996	-	HNE_2753	-	hypothetical protein
2699	 66.28	+1	2914580..2915353	-	257	114798016	-	HNE_2754	-	NAD dependent epimerase/dehydratase family protein
2700	 66.03	+1	2915483..2916106	+	207	114797072	rnhB	HNE_2755	-	ribonuclease HIII
2701	 64.54	0	2916153..2916623	+	156	114799084	-	HNE_2756	-	GIY-YIG domain-containing protein
2702	 67.61	+1	2916630..2917685	-	351	114797801	queA	HNE_2757	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2703	 62.80	0	2917718..2918701	-	327	114800546	-	HNE_2758	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2704	 56.22	-1	2918698..2919195	-	165	114799402	coaD	HNE_2759	-	pantetheine-phosphate adenylyltransferase
2705	 63.75	0	2919249..2922029	-	926	114798624	gyrA	HNE_2760	-	DNA gyrase, A subunit
2706	 69.98	+2	2922207..2923262	+	351	114798250	-	HNE_2761	-	kelch repeat-containing protein
2707	 63.64	0	2923295..2923954	+	219	114800326	-	HNE_2762	-	glutathione S-transferase
2708	 67.03	+1	2923963..2924784	-	273	114799804	-	HNE_2763	-	putative beta-lactamase
2709	 62.20	0	2924846..2925337	-	163	114797480	ssb	HNE_2764	-	single-strand binding protein
2710	 61.90	0	2925564..2928542	+	992	114798706	uvrA	HNE_2765	-	excinuclease ABC, A subunit
2711	 60.86	0	2928560..2929540	-	326	114799509	-	HNE_2766	-	hypothetical protein
2712	 65.20	0	2929595..2930410	-	271	114800262	-	HNE_2767	-	hypothetical protein
2713	 62.39	0	2930509..2931912	+	467	114797503	gid	HNE_2768	-	tRNA (uracil-5-)-methyltransferase Gid
2714	 62.50	0	2931918..2932805	+	295	114797440	-	HNE_2769	-	PP-loop family protein
2715	 61.55	0	2932806..2934095	-	429	114799393	-	HNE_2770	-	acyl-CoA dehydrogenase family protein
2716	 67.58	+1	2934191..2935504	-	437	114799900	-	HNE_2771	-	putative DNA-damage-inducible protein F
2717	 61.37	0	2935604..2936905	-	433	114797831	-	HNE_2772	-	acyl-CoA dehydrogenase family protein
2718	 65.06	0	2937036..2937782	+	248	114799162	-	HNE_2773	-	hypothetical protein
2719	 65.66	0	2937953..2938846	+	297	114799906	-	HNE_2774	-	LysR family transcriptional regulator
2720	 65.23	0	2938870..2940606	-	578	114800280	-	HNE_2775	-	glutathione-regulated potassium-efflux system protein
2721	 70.07	+2	2940664..2941104	-	146	114798136	-	HNE_2776	-	cytidine/deoxycytidylate deaminase family protein
2722	 64.28	0	2941194..2941862	-	222	114799259	-	HNE_2777	-	enoyl-CoA hydratase/isomerase family protein
2723	 67.56	+1	2942008..2942568	+	186	114800273	-	HNE_2778	-	putative methyltransferase
2724	 62.80	0	2942565..2942978	-	137	114797727	-	HNE_2779	-	hypothetical protein
2725	 62.98	0	2943054..2944085	-	343	114797322	-	HNE_2780	-	patatin family phospholipase
2726	 70.74	+2	2944171..2945421	+	416	114799366	-	HNE_2781	-	putative 23S rRNA (uracil-5-)-methyltransferase RumA
2727	 69.80	+2	2945418..2945864	+	148	114798768	-	HNE_2782	-	NUDIX family hydrolase NudH subfamily hydrolase
2728	 63.61	0	2946035..2946820	+	261	114797788	-	HNE_2783	-	short chain dehydrogenase/reductase family oxidoreductase
2729	 58.48	0	2946938..2947267	+	109	114799889	-	HNE_2784	-	hypothetical protein
2730	 57.22	-1	2947385..2947744	-	119	114798807	-	HNE_2785	-	hypothetical protein
2731	 63.60	0	2947962..2948939	+	325	114798273	-	HNE_2786	-	trans-2-enoyl-ACP reductase II
2732	 59.20	0	2948987..2949991	-	334	114800373	corA	HNE_2787	-	magnesium and cobalt transport protein CorA
2733	 61.84	0	2950058..2951239	-	393	114799604	-	HNE_2788	-	glucose/sorbosone family dehydrogenase
2734	 64.06	0	2951264..2952259	-	331	114798418	-	HNE_2789	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2735	 62.56	0	2952239..2952676	+	145	114799433	-	HNE_2790	-	hypothetical protein
2736	 65.46	0	2952673..2954583	+	636	114798236	ggt1	HNE_2791	-	gamma-glutamyltransferase
2737	 64.09	0	2954573..2955232	+	219	114797491	-	HNE_2792	-	uracil-DNA glycosylase family protein
2738	 63.85	0	2955229..2955867	-	212	114799696	-	HNE_2793	-	TetR family transcriptional regulator
2739	 65.02	0	2955949..2956980	+	343	114799652	-	HNE_2794	-	phosphotransferase enzyme family protein
2740	 61.04	0	2957024..2958250	+	408	114798453	-	HNE_2795	-	putative acyl-CoA dehydrogenase
2741	 65.04	0	2958275..2959318	+	347	114797612	-	HNE_2796	-	alcohol dehydrogenase, class III
2742	 65.40	0	2959410..2960672	+	420	114800014	-	HNE_2797	-	cytochrome P450 family protein
2743	 50.51	-2	2960739..2961332	-	197	114799234	-	HNE_2798	-	phosphoprotein phosphatase
2744	 63.79	0	2961333..2961818	-	161	114797634	smpB	HNE_2799	-	SsrA-binding protein
2745	 65.08	0	2961828..2962709	-	293	114798403	dapA	HNE_2800	-	dihydrodipicolinate synthase
2746	 68.40	+1	2962811..2965003	+	730	114800029	-	HNE_2801	-	Slt family transglycosylase
2747	 58.33	-1	2965327..2965722	+	131	114797083	-	HNE_2802	-	hypothetical protein
2748	 59.99	0	2965861..2967297	-	478	114797304	calB	HNE_2803	-	coniferyl aldehyde dehydrogenase
2749	 64.92	0	2967465..2968265	+	266	114798301	-	HNE_2804	-	enoyl-CoA hydratase
2750	 61.55	0	2968364..2968852	+	162	114800167	-	HNE_2805	-	hypothetical protein
2751	 60.05	0	2968855..2969232	-	125	114797631	-	HNE_2806	-	TfoX domain-containing protein
2752	 59.86	0	2969231..2969524	+	97	114797266	-	HNE_2808	-	hypothetical protein
2753	 64.39	0	2969249..2969380	-	43	114798438	-	HNE_2807	-	hypothetical protein
2754	 61.57	0	2969503..2970699	-	398	114799425	-	HNE_2809	-	beta-lactamase
2755	 62.45	0	2970738..2971898	-	386	114797804	-	HNE_2810	-	acyl-CoA dehydrogenase
2756	 60.65	0	2972010..2972441	+	143	114799197	-	HNE_2811	-	thioesterase family protein
2757	 60.61	0	2972438..2973229	+	263	114799740	-	HNE_2812	-	short chain dehydrogenase/reductase family oxidoreductase
2758	 66.63	+1	2973328..2975991	-	887	114797546	-	HNE_2813	-	M1 family peptidase
2759	 61.30	0	2978025..2978639	-	204	114798409	-	HNE_2815	-	glutathione S-transferase
2760	 65.79	+1	2978650..2980584	-	644	114799151	-	HNE_2816	-	putative TonB-dependent receptor
2761	 64.57	0	2980743..2982032	-	429	114800517	-	HNE_2817	-	NupC family nucleoside transporter
2762	 62.47	0	2982243..2983790	+	515	114797922	-	HNE_2818	-	serine carboxypeptidase family protein
2763	 64.75	0	2984329..2984694	-	121	114798926	-	HNE_2819	-	glyoxalase family protein
2764	 63.52	0	2984839..2985759	+	306	114800383	-	HNE_2820	-	short chain dehydrogenase/reductase family oxidoreductase
2765	 65.33	0	2985826..2986200	+	124	114797599	-	HNE_2821	-	Kazal domain-containing protein
2766	 67.98	+1	2986216..2986443	-	75	114798377	-	HNE_2822	-	hypothetical protein
2767	 57.79	-1	2986459..2987055	-	198	114799134	-	HNE_2823	-	hypothetical protein
2768	 70.14	+2	2987157..2988221	-	354	114800085	-	HNE_2824	-	hypothetical protein
2769	 62.37	0	2988553..2989926	-	457	114799107	-	HNE_2825	-	Ser/Thr protein phosphatase family protein
2770	 61.94	0	2990103..2990525	-	140	114797079	rplQ	HNE_2826	-	ribosomal protein L17
2771	 60.16	0	2990570..2991598	-	342	114798821	rpoA	HNE_2827	-	DNA-directed RNA polymerase subunit alpha
2772	 62.05	0	2991654..2992043	-	129	114799611	rpsK	HNE_2828	-	30S ribosomal protein S11
2773	 57.99	-1	2992057..2992425	-	122	114800366	rpsM	HNE_2829	-	30S ribosomal protein S13
2774	 62.11	0	2992574..2993143	-	189	114797627	adk	HNE_2830	-	adenylate kinase
2775	 58.92	0	2993140..2994495	-	451	114797687	secY	HNE_2831	-	preprotein translocase, SecY subunit
2776	 63.96	0	2994585..2995064	-	159	114797152	rplO	HNE_2832	-	ribosomal protein L15
2777	 61.29	0	2995117..2995302	-	61	114798424	rpmD	HNE_2833	-	ribosomal protein L30
2778	 64.01	0	2995315..2995917	-	200	114799166	rpsE	HNE_2834	-	30S ribosomal protein S5
2779	 63.09	0	2995931..2996293	-	120	114798156	rplR	HNE_2835	-	ribosomal protein L18
2780	 60.95	0	2996298..2996909	-	203	114797429	rplF	HNE_2836	-	ribosomal protein L6
2781	 57.32	-1	2996922..2997317	-	131	114799650	rpsH	HNE_2837	-	ribosomal protein S8
2782	 60.78	0	2997334..2997639	-	101	114798922	rpsN	HNE_2838	-	ribosomal protein S14
2783	 57.30	-1	2997659..2998213	-	184	114797583	rplE	HNE_2839	-	50S ribosomal protein L5
2784	 58.18	-1	2998206..2998523	-	105	114799152	rplX	HNE_2840	-	ribosomal protein L24
2785	 61.25	0	2998526..2998894	-	122	114799563	rplN	HNE_2841	-	ribosomal protein L14
2786	 54.07	-2	2998891..2999136	-	81	114798486	rpsQ	HNE_2842	-	ribosomal protein S17
2787	 55.56	-1	2999148..2999345	-	65	114799564	rpmC	HNE_2843	-	ribosomal protein L29
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.